LOCUS       NZ_CP104463             1063 bp    DNA     linear   CON 04-OCT-2023
DEFINITION  Raoultella ornithinolytica strain MQB_Silv_108 plasmid
            pMQB_Silv108.7.
ACCESSION   NZ_CP104463
VERSION     NZ_CP104463.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30696136
            Assembly: GCF_025349945.1
KEYWORDS    RefSeq.
SOURCE      Raoultella ornithinolytica
  ORGANISM  Raoultella ornithinolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
REFERENCE   1  (bases 1 to 1063)
  AUTHORS   Quintela-Baluja,M.
  TITLE     Multidrug resistance Raoultella ornithinolytica Strain MQB_Silv_108
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1063)
  AUTHORS   Quintela-Baluja,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2022) Analytical Chemistry, Nutrition and Food
            Science. School of Veterinary Sciences, University of Santiago de
            Compostela, Carballo Calero, s/n, Lugo, Lugo 15704, Spain
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. v0.5.0
            Assembly Name                     :: MQB_Silv_108
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 148.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/04/2023 05:03:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,209
            CDSs (total)                      :: 6,085
            Genes (coding)                    :: 5,945
            CDSs (with protein)               :: 5,945
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 44 of 140
            Pseudo Genes (incomplete)         :: 98 of 140
            Pseudo Genes (internal stop)      :: 26 of 140
            Pseudo Genes (multiple problems)  :: 25 of 140
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104463.1.
            Bacteria and source DNA available from marcos.quintela@rai.usc.es.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Raoultella ornithinolytica"
                     /mol_type="genomic DNA"
                     /strain="MQB_Silv_108"
                     /isolation_source="wastewater"
                     /db_xref="taxon:54291"
                     /plasmid="pMQB_Silv108.7"
                     /geo_loc_name="Spain"
                     /collection_date="2015"
                     /collected_by="MQB"
     gene            103..639
                     /locus_tag="N2J37_RS30985"
                     /old_locus_tag="N2J37_30985"
     CDS             103..639
                     /locus_tag="N2J37_RS30985"
                     /old_locus_tag="N2J37_30985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002069891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023150440.1"
                     /translation="MKKVYTAIILIVLLCGGVLSANYIFLQRHMNEVLKEDPRNDGISV
                     WVYYKWFVNSSEINYDLRSVSAENSSLDVSRVMLQFAEKVKDYDFSKVYLSYRGKDKFY
                     LKGEYFKTLGQEYGIQNPVYTLRTIPENVYMLNGERAYSVWEGGLLGVMGKQMEDLSDF
                     SKAWYLDDFIKSMSD"
                     /name="hypothetical protein"
ORIGIN
        1 aagacgttat ggtaaatcga tgcttaattc cttgctaact tatggcacct tagcttaaaa
       61 atctcagggt aaactttaga gcagttgaga tggattatag aaatgaaaaa agtatataca
      121 gcaatcatat taatagtact cttatgtggt ggtgttttat ctgccaacta catttttctt
      181 caaaggcaca tgaatgaggt tctgaaagaa gatccaagga atgatggtat tagcgtttgg
      241 gtttattata agtggtttgt aaactcttcc gagattaatt atgaccttcg ttctgtttct
      301 gcagaaaata gttcactgga tgttagtagg gtgatgctgc aatttgctga aaaagtgaaa
      361 gattatgatt ttagtaaggt ttatcttagt tacagaggga aagataagtt ttacttaaaa
      421 ggagagtatt ttaaaactct tgggcaggaa tatggtattc aaaaccccgt atatacatta
      481 agaacaattc cggaaaacgt gtatatgtta aatggagaga gagcttatag tgtttgggag
      541 ggtgggcttc tgggtgtaat gggaaaacag atggaagatc ttagtgattt ctctaaggct
      601 tggtacttag atgatttcat taaaagcatg agcgattaat ttgaagcgat cagtatacat
      661 tgacgattag ctcacgcaaa tcgctcattg gtcactgggg tgtttttact cgtagatgct
      721 ttagatgtgt gacctgctcc ccgtggatta caaggccgtc atctgataat gcccctaatg
      781 ggtcagatct ctaggatagt agcaatacag caaggaactt cttgagatcc tttctgttgc
      841 gtcgtaatct cttgctctgt aaacgaaaaa accgcccagc aaggcggttt tctcgaaggt
      901 tctcagagca gcaactcttt gaaccgaggt aactggctag ttagaggagc gcagtcacca
      961 aaactgttcg tttagtttag ccttaactgg cgcatgactt caagactatc tcctctaaat
     1021 cagttaccag tggctgctgc cagtggcgct tttgcatgtc tta
//
