LOCUS       NZ_CP104461             2886 bp    DNA     linear   CON 04-OCT-2023
DEFINITION  Raoultella ornithinolytica strain MQB_Silv_108 plasmid
            pMQB_Silv108.5, complete sequence.
ACCESSION   NZ_CP104461
VERSION     NZ_CP104461.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30696136
            Assembly: GCF_025349945.1
KEYWORDS    RefSeq.
SOURCE      Raoultella ornithinolytica
  ORGANISM  Raoultella ornithinolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
REFERENCE   1  (bases 1 to 2886)
  AUTHORS   Quintela-Baluja,M.
  TITLE     Multidrug resistance Raoultella ornithinolytica Strain MQB_Silv_108
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2886)
  AUTHORS   Quintela-Baluja,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2022) Analytical Chemistry, Nutrition and Food
            Science. School of Veterinary Sciences, University of Santiago de
            Compostela, Carballo Calero, s/n, Lugo, Lugo 15704, Spain
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2022
            Assembly Method                   :: Unicycler v. v0.5.0
            Assembly Name                     :: MQB_Silv_108
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 148.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/04/2023 05:03:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,209
            CDSs (total)                      :: 6,085
            Genes (coding)                    :: 5,945
            CDSs (with protein)               :: 5,945
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 44 of 140
            Pseudo Genes (incomplete)         :: 98 of 140
            Pseudo Genes (internal stop)      :: 26 of 140
            Pseudo Genes (multiple problems)  :: 25 of 140
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104461.1.
            Bacteria and source DNA available from marcos.quintela@rai.usc.es.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Raoultella ornithinolytica"
                     /mol_type="genomic DNA"
                     /strain="MQB_Silv_108"
                     /isolation_source="wastewater"
                     /db_xref="taxon:54291"
                     /plasmid="pMQB_Silv108.5"
                     /geo_loc_name="Spain"
                     /collection_date="2015"
                     /collected_by="MQB"
     gene            complement(<1..375)
                     /locus_tag="N2J37_RS30960"
                     /old_locus_tag="N2J37_30960"
     CDS             complement(<1..375)
                     /locus_tag="N2J37_RS30960"
                     /old_locus_tag="N2J37_30960"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_260990894.1"
                     /translation="MSYQFIHIEDYGINISKKRSNNGTSEKYKKETKGRSVSQIISEAK
                     RDNGFCSHVEKPEDPIILYGKSLDEVEKLAMEYHSKTKIIDKNGKEKKLRSDANVLLAG
                     VISLNRENMEIWEDYKNDSIA"
                     /name="hypothetical protein"
     gene            complement(680..1654)
                     /locus_tag="N2J37_RS30965"
                     /old_locus_tag="N2J37_30965"
     CDS             complement(680..1654)
                     /locus_tag="N2J37_RS30965"
                     /old_locus_tag="N2J37_30965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000427687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_260990895.1"
                     /translation="MERIDNKKIKVKFENLSDRSEKDSVWDLHRKDCDLVSDLYFQTAE
                     FERYFERMENCSGRLEFNQLLDRETGEIKIKLTNAHFCRVRHCPVCQWRKSLMWKAKFY
                     KALPEIEAEYKSARWMFLTLTVENCEITDLKNTLSHMNKAFKKMIKRKHFLKNNLGFVK
                     TTEITRSKDGKAHPHFHILLMMKSTYFKGTEYMKTSDWAELWRDCLGVSYTPVTDIRIV
                     KVKNGGDSSRSALADAVAETLKYAVKPSDMTKDREWFHELTRQVFKLRFVSTGGVLKDL
                     FKEETSEEDLLLLSEEEEADKEIGSLYFNWYRTKSKYRRKITE"
                     /name="protein rep"
     gene            complement(2095..>2886)
                     /locus_tag="N2J37_RS30970"
                     /old_locus_tag="N2J37_30970"
     CDS             complement(2095..>2886)
                     /locus_tag="N2J37_RS30970"
                     /old_locus_tag="N2J37_30970"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_260990896.1"
                     /translation="YLKNKYGKKLISVIEHTDEEHPHIHFYCIQDIGKKFDLIHDGKKA
                     LHENKDKKKHDQNIAYLDSMRAFQEDFFKVVSSNYGLSKDGPRRARMSRSDYFKLGREV
                     KLINQVKLKAKKDGYKFAIDEFESKNWLNKITASITFNKDSLNEAVSRGNKYKKSLSSK
                     TKKLKELEDIETKYNDLRKDFKIRVNNQTENLRNKNNTLESENENIKNKNIKLEEENKK
                     LKTTLEETSPLYELLKNKFGDQFEEWKNNLFKSFRSKIKPK"
                     /name="hypothetical protein"
ORIGIN
        1 agctatcgag tcatttttat aatcctccca tatttccata ttttcacgat ttaaagaaat
       61 gaccccggcg agtaaaacat tagcatcaga tcttaatttt ttctctttcc cgtttttatc
      121 tattatcttt gttttactat ggtattccat agcgagtttt tcaacctcat ctaaactctt
      181 accatataaa ataatcggat cttctggttt ttcaacatga gaacaaaacc cgttatctct
      241 ttttgcttct gatattattt gactaacgga tcttcctttt gtttcttttt tgtatttttc
      301 acttgttccg ttattactcc tttttttaga tatatttatt ccgtaatctt caatatgtat
      361 aaactgatat gacattatat ttacccctgc ttttatattt tttcctatat atatttttta
      421 gcatatttcc cgtttttgta aatacatagg aaccgactat gtttattctt cgaataaacg
      481 cggccccttc gggggaaggt caaaaaataa aatcaaaaga cataaaaaaa gcaccttcgc
      541 aggtgccttt tttactactt accagttagt gtttttatac aaactataat ggttagtaag
      601 tttgataaaa tagatattac agttatagca gtgatcataa tattctcctt atattatttt
      661 ttacaatcac tactatttat cattctgtaa tttttcttct gtattttgat ttcgttctat
      721 accagttaaa atataatgat ccgatttctt tatcggcttc ttcttcttca ctcaataata
      781 ataaatcttc ttctgaagtt tcttctttaa ataaatcttt caatacccca ccagtagaaa
      841 caaaacgcaa tttaaatacc tgtcttgtta gttcgtggaa ccactcacga tctttagtca
      901 tatcacttgg ttttacagca tatttcaaag tttcagccac agcatcagca agagccgaac
      961 ggctagaatc cccgccgttc ttgaccttaa cgatcctaat gtctgttact ggtgtgtatg
     1021 acacaccaag gcaatccctc cagagttcag cccagtcact ggttttcata tactccgttc
     1081 ctttgaagta ggtgcttttc atcattagca atatatgaaa atgaggatgt gcctttccat
     1141 cttttgatct tgttatttcc gtagtcttaa caaaaccaag attgtttttc agaaaatgtt
     1201 tcctcttaat cattttttta aaagctttat tcatatgaga aagagtattt tttaaatcag
     1261 ttatttcaca gttttctact gttagagtta aaaacatcca gcgggcagat ttatattctg
     1321 cctcgatttc tggaagtgct ttataaaatt ttgctttcca cataagcgat tttctccact
     1381 gacaaaccgg gcaatgtctt acacggcaga aatgagcatt tgttagtttt atttttattt
     1441 cgcccgtttc acggtctaac agttgattaa actctaaacg accagagcag ttttccattc
     1501 tttcaaaata tctttcaaac tctgctgttt gaaaatataa atcagataca agatcacagt
     1561 ccttacggtg taaatcccaa acactatctt tttccgatct atcacttaga ttttcaaact
     1621 tgacttttat ttttttatta tctattctct ccatagatat accgatcccc gtattatagt
     1681 ttttgacttc gacactcaaa acttaacacg gggatttttt ttgtcaacgt tataccaaaa
     1741 tcccaccttc taaaaccccc gaaacccttg ctacacaagg cttatagcct gttttatggc
     1801 ttttctttta tccgaccgtt atgcctaagg tatcaagtaa aggaaaatca ccctctgcga
     1861 ggctgttttt aacacccaaa accactactg gaagaaaccc accaacccat aagccaaaag
     1921 ccctgtatgg gcttctgagg gcttctaaca accccaaacc ggcttaacag gtgtaagggt
     1981 cgctttgctc tccttacacc attacaagct tgttcttatg gtgtgtagtc aacaacaata
     2041 gcggaaccca accgtaaacg gtcgggaccc ccgccattct tattgactat ttaactattt
     2101 aggttttatt ttggatctaa aagatttaaa taagttattt ttccattcct caaactgatc
     2161 cccaaactta ttttttaata gctcgtagag tggagaagtt tcttcaagag tggtttttag
     2221 ttttttattt tcttcttcca gttttatatt tttgtttttt atattttcat tttcagactc
     2281 aagagtatta tttttattcc ttagattttc agtttggtta ttaactctaa ttttaaaatc
     2341 ctttctcaaa tcattatatt tggtttctat atcttcgagt tcttttagtt ttttagtttt
     2401 actactaagc gattttttat atttattccc acgggaaaca gcttcattta atgagtcttt
     2461 attaaatgta atacttgctg ttattttatt taaccagttc ttactttcga attcgtctat
     2521 tgcaaattta taaccatctt tttttgcttt taactttact tgattaataa gcttaacctc
     2581 tctaccaagc ttgaagtagt cagaacggct cattctagcc cttctggggc cgtctttcga
     2641 caagccatag ttagagctta ctactttaaa aaaatcctcc tgaaaggctc tcattgaatc
     2701 caagtaagct atattttgat cgtgtttttt cttatcttta ttttcatgca atgctttttt
     2761 tccgtcgtgt atcaaatcaa actttttacc tatatcctga atacaataaa aatgtatgtg
     2821 aggatgttcc tcgtcggtat gttcaataac tgatataagc tttttaccat acttattttt
     2881 caaata
//
