LOCUS       NZ_CP104360             4633 bp    DNA     circular CON 02-OCT-2023
DEFINITION  Salmonella enterica strain PNUSAS119065 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP104360
VERSION     NZ_CP104360.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13390196
            Assembly: GCF_025259065.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4633)
  AUTHORS   Young,E.L., Hergert,J., Casey,R. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease submission group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 179.0x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/02/2023 03:36:02
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,647
            CDSs (total)                      :: 4,526
            Genes (coding)                    :: 4,348
            CDSs (with protein)               :: 4,348
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 178
            CDSs (without protein)            :: 178
            Pseudo Genes (ambiguous residues) :: 0 of 178
            Pseudo Genes (frameshifted)       :: 76 of 178
            Pseudo Genes (incomplete)         :: 116 of 178
            Pseudo Genes (internal stop)      :: 38 of 178
            Pseudo Genes (multiple problems)  :: 46 of 178
            Pseudo Genes (short protein)      :: 1 of 178
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP104360.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4633
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="PNUSAS119065"
                     /db_xref="taxon:28901"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA"
                     /collected_by="CDC"
     gene            complement(528..851)
                     /locus_tag="N4275_RS23155"
                     /old_locus_tag="N4275_23155"
     CDS             complement(528..851)
                     /locus_tag="N4275_RS23155"
                     /old_locus_tag="N4275_23155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            914..1105
                     /locus_tag="N4275_RS23160"
                     /old_locus_tag="N4275_23160"
     CDS             914..1105
                     /locus_tag="N4275_RS23160"
                     /old_locus_tag="N4275_23160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165986.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1775..1924
                     /locus_tag="N4275_RS23275"
     CDS             1775..1924
                     /locus_tag="N4275_RS23275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032194431.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHVKTPLAAAIGNRLEELVLK
                     LCAG"
                     /name="hypothetical protein"
     gene            2116..2955
                     /locus_tag="N4275_RS23165"
                     /old_locus_tag="N4275_23165"
     CDS             2116..2955
                     /locus_tag="N4275_RS23165"
                     /old_locus_tag="N4275_23165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001354646.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(3683..3916)
                     /locus_tag="N4275_RS23170"
                     /old_locus_tag="N4275_23170"
     CDS             complement(3683..3916)
                     /locus_tag="N4275_RS23170"
                     /old_locus_tag="N4275_23170"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3923..4483)
                     /locus_tag="N4275_RS23175"
                     /old_locus_tag="N4275_23175"
     CDS             complement(3923..4483)
                     /locus_tag="N4275_RS23175"
                     /old_locus_tag="N4275_23175"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067488.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     Typing          complement(1194..1278)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          1289..1844
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.907"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(3..538)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="8.51e-114"
     Typing          complement(3586..4631)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.713"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 cctcaagacc ccgtgtaatc gcttctgcgg cctcctgttt cgcttttggc agattattcg
       61 gtgtgacaag cgtccgtctg ttctccggtg cgttcgggtc acgcagcccg taatgatgat
      121 taaccagcgt ctgccaggca tttatcctcg gcctgtccgc acggtcgtag tacggctgga
      181 ggcgcttacc gctctgtagt tccatgttcg gaatgacaaa attcagttcg agccgcccct
      241 tatcctggtg ttccacccag agaatgctgt actggtcttt ttcgagaccg ggcataagaa
      301 cacgctcaaa gctcgtcatc actctttcgc gttcacccgg cggtaactcc ttctccgcga
      361 acgacagaac gcctgacgtg tatttcttcg aaaatggcgt ggcatcaatg agttcccgga
      421 tttcttccgg gttaccccgg agcaccgttg cgccttcgcg gttacgctcc cgccccagca
      481 ggtaatcgac cgggccactt ccaccgcctt tccccctggc atgaaattta actatcatcc
      541 cgtcccccct gttccctgac agcctgccgc aactggcgca attcaccctc gatggccatc
      601 agtgcggcca ccacatgaac ccggtcaatc gaagaccagt ggccgctgtt caccttccgg
      661 gctgtctggt tcagattgtt cccgatggca gccagatgcc gcagcaatgg cggcgatagt
      721 gtcggcagtt ttcctgtgcg cgcaaccggc tcccccagac agacccgccg catccattct
      781 gccagtcgtt taccctcgca gcgttccagt aaccgggcgt gctcctcatc gctaacccgt
      841 atcgtgagca tcttctcgcg tttcatcggt atcattcccc ctaaaaaatc ccctattaag
      901 gagccttaag accatgacca aacaggaaaa aacagccctt aacatggccc gctttatcag
      961 aagccagacg ctgaccctgc tggaaaaact caacgagctg gacgcggacg aacaggcaga
     1021 catctgcgaa tcacttcacg accacgccga cgaactctac cgtagttgcc tcgcacgctt
     1081 cggcgatgac ggtgaaagca actgaaacat gcagctcccg gagacgttca cagcttgcct
     1141 gtgagcggat gccgggagca gacaagcccg tcagggcgcg tcagcgggtt ttagcgggtg
     1201 tcggggcgca gccctgaccc agtcacgtag cgatagcgga gtgtatactg gcttaactat
     1261 gtggcatcag tgcggattat aagaaaagtg caccatatgc ggtgtgaaat accgcacaga
     1321 tgcgtaagga gaaaatgccg catcaggcgc tcttccgctt cctcgctcac tgactcgcta
     1381 cgctcggtcg ttcggctgcg gcgagcggta tcagctcact caaagacggt gatgcggtta
     1441 tccacagaat caggggataa cgccaaaaga aacatgtgag caaaaggcca agaacaggaa
     1501 gaaggccgcg ccgctggcgt ttttccatag gctccgcccc cctgacgagc atcacaaaaa
     1561 cagacgctca agtcagaggt ggcgaaaccc gacaggacta taaagatacc aggcgtttcc
     1621 ccctggaagc tccctcgtgc gctctcctgt tccgaccctg ccgcttaccg gatacctgtc
     1681 cgcctttctc ccttcgggaa gcgtggcgct ttctcatagc tcacgctgtt ggtatctcgg
     1741 cccggtgtag gtcgttcgct ccaagctggg ctgtgtgcac gaaccccccg ttcagcccga
     1801 ccgctgcgcc ttatccggta actatcgtct tgagtccaac ccggaaagac acgtaaaaac
     1861 gccactggca gcagccattg gtaaccgttt agaggagtta gtcttgaagt tatgcgccgg
     1921 ttaaggctaa actgaaagga cagatttggt ggctgtgctc ctccaagcca gttaccttgg
     1981 ttcaaagagt tgctgctctg agaaccttcg aaaagccgcc ttgctgggcg gttttttcgt
     2041 ttacggacaa gactaccttc aggatcgtta gatctcaaga caatcatgca tagtgagcat
     2101 acacaggagc cgaacttgct tacactgttc atcttttttg ttttattaat agctgcatgt
     2161 ttcttttgtt ttgctccacc acgaagagga tatgacagaa atgagatcat tccatacaaa
     2221 ataaaactat caataaataa atatcgcctt tacatatact catcgggaaa ggtaagacaa
     2281 taccttttat ttttagttat tttatcactg tactactcca tagcggaacc atttaagtct
     2341 gagttaataa aaaacatatc atattcactg atggctgcat ttatttttga tacagggctt
     2401 aattttagca aggagaatat aactaaaggg gtgatttcaa caaggtggca taatgaccta
     2461 tattcatcat ttgagagaat gaaagcaatt aataaaattt actacccatc caacaaagag
     2521 ataaacacag aaggtctatc caaagccatc acatcatctc ttttcaatga tgacgcgaac
     2581 tcgttcgcaa agagagattt tcgcttgatg tgggacttat cttctgaaaa atatctttcc
     2641 tataaagaaa taataataag aaaaggcgat aagcttgacg ctgtatgctt gagatttata
     2701 aatgatgact acaagttttt agttaatttc aacagagatg aagaggtttt caaatacttt
     2761 ccatctataa tgcaaccttc actcaaaaca tatagagcgt tatcaagact agtaaactca
     2821 atcaaagatc cttctagatt taagttcacg acagagtcat tagaaatgga gttactagaa
     2881 tacttagagt taagaaatga attattcaat gacatagaag aagtaatggg tagctatgct
     2941 cagagggcac catagttcat gatagccctc gatagtactt acttatattt ttagagaggt
     3001 ttaagtgtaa gtagagggag taacacctgg tttttcagca tccactccaa tgaatgctga
     3061 caccgatacg cgataattct ctttatcgta gcaaaatcat cctccagatt gcggttgaga
     3121 ataggttcat ggtgcgcaat acgattgcgc agttttctca cgggacttgt tagcagtaat
     3181 gcttcccccc ggggacaaac gacagagata tacaacaaag gcccgctgta tagagtacag
     3241 cgggcctttg ttgttttaat tcccgcaatt aaaatactcc gtatttacca taacgtcgca
     3301 ttgcgcgtac cgcttaaacg cgttcagcgc gatcacggca gcagacaggt aaaaacagca
     3361 acaaaccacc cgaaaaactg ccgcgatcgc gcctggtaaa ttttaacctc atgcatagtt
     3421 atgcgcgaaa ctgaatgacg atcagtttcg cacgttccag ccgtcgaacg gggcaaaatg
     3481 gggaggtttg gatattgtta atgctaatgt acgtacatta acattggcgc catccgggta
     3541 gggcgtgcca caaactggct cgatttcagg gggcaccccg gtcacatccc cattgacggg
     3601 ccacgccaga tccgcgcttc gggttcctgc tcttcatgcc agcgccgggc aagctcctgc
     3661 gcctgacgct cctgttcatc ccttatctgt tgttcgtgat aaataaccga ctcaagcggt
     3721 cgacttgtcc ggctaatagc tgcacctgct gactcaagtt cacgacacgc tcgttcagta
     3781 tcgcgttgtt ctgttgcgta accgcgtgca tcttctgcaa ttctgcgaag gcgctctccc
     3841 actcgttcag ccgccgcata tagtcctgtt gcaaatgctc taaggcgttc agcaaatgcc
     3901 cttccagttc cgtcatactc gtttactccc tgaccagcct cacggcgttc ttgtcgccca
     3961 ccgtccaggt gttttcccct ttcaccccgt ccggcagcac cagaaatttc ccgttctcgc
     4021 cattgacgaa cgtcaccccc caggtttttg cctcgagttt cgccagcgtg ttttcctgct
     4081 ctctgatggt caagatattt ttcgcaatcc tgctttcctg ccactgaatc agcccccagc
     4141 accccaggaa aatgccgccc gtgacgctga gcgcggtcag cgccggaaac agtacccgcc
     4201 ctttgatcac ctgccagagc aggtttttct gctgccggga cagttcggcc tctgtggtgc
     4261 tgagctgcgt gctcacggtg gtgctcagcg tatccagttg ctgtttcacg gatgttgtat
     4321 gttcgctgat agcgtctctg attttctgcc tgtttaagct cagtgccttg tctacagact
     4381 cttctagctt cctgaactcg ctgttcagca tgttctcggt agaagcggct cgctctttca
     4441 gtttcttctc gaagtctgtt cccatttgta aaagattgct catacagcgc cccctttagc
     4501 ctgagattcc gccccccctc cgggtcggca atactgatac tgcttctggt tgtcctcacc
     4561 acctcaaaac ctgccgctgt gagcgcctca gtgacatcct gacgcgtttt tattgctccg
     4621 gcacggtaaa gcg
//
