LOCUS       NZ_CP103380             4162 bp    DNA     circular CON 17-SEP-2023
DEFINITION  Bacteroides thetaiotaomicron strain BFG-266 plasmid unnamed3,
            complete sequence.
ACCESSION   NZ_CP103380
VERSION     NZ_CP103380.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30323249
            Assembly: GCF_024799865.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides thetaiotaomicron
  ORGANISM  Bacteroides thetaiotaomicron
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4162)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4162)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 75x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/16/2023 04:26:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,973
            CDSs (total)                      :: 4,886
            Genes (coding)                    :: 4,490
            CDSs (with protein)               :: 4,490
            Genes (RNA)                       :: 87
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 396
            CDSs (without protein)            :: 396
            Pseudo Genes (ambiguous residues) :: 0 of 396
            Pseudo Genes (frameshifted)       :: 344 of 396
            Pseudo Genes (incomplete)         :: 49 of 396
            Pseudo Genes (internal stop)      :: 24 of 396
            Pseudo Genes (multiple problems)  :: 19 of 396
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103380.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4162
                     /organism="Bacteroides thetaiotaomicron"
                     /mol_type="genomic DNA"
                     /strain="BFG-266"
                     /host="Homo sapiens"
                     /db_xref="taxon:818"
                     /plasmid="unnamed3"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="1988-09-02"
     gene            join(3950..4162,1..813)
                     /locus_tag="NXY38_RS24830"
                     /old_locus_tag="NXY38_24865"
     CDS             join(3950..4162,1..813)
                     /locus_tag="NXY38_RS24830"
                     /old_locus_tag="NXY38_24865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_004295509.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
     gene            complement(850..1080)
                     /locus_tag="NXY38_RS24835"
                     /old_locus_tag="NXY38_24870"
     CDS             complement(850..1080)
                     /locus_tag="NXY38_RS24835"
                     /old_locus_tag="NXY38_24870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295510.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="hypothetical protein"
     gene            complement(1100..1552)
                     /gene="mbpC"
                     /locus_tag="NXY38_RS24840"
                     /old_locus_tag="NXY38_24875"
     CDS             complement(1100..1552)
                     /gene="mbpC"
                     /locus_tag="NXY38_RS24840"
                     /old_locus_tag="NXY38_24875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpC"
                     /protein_id="WP_004295511.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="mbpC"
     gene            complement(1509..2303)
                     /gene="mbpB"
                     /locus_tag="NXY38_RS24845"
                     /old_locus_tag="NXY38_24880"
     CDS             complement(1509..2303)
                     /gene="mbpB"
                     /locus_tag="NXY38_RS24845"
                     /old_locus_tag="NXY38_24880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpB"
                     /protein_id="WP_007560590.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="mbpB"
     gene            complement(2300..2613)
                     /gene="mbpA"
                     /locus_tag="NXY38_RS24850"
                     /pseudo=""
     CDS             complement(2300..2613)
                     /gene="mbpA"
                     /locus_tag="NXY38_RS24850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327437.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpA"
                     /name="mbpA"
     gene            complement(2806..3003)
                     /locus_tag="NXY38_RS24855"
                     /old_locus_tag="NXY38_24885"
     CDS             complement(2806..3003)
                     /locus_tag="NXY38_RS24855"
                     /old_locus_tag="NXY38_24885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295503.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            complement(3014..3289)
                     /locus_tag="NXY38_RS24860"
                     /old_locus_tag="NXY38_24890"
     CDS             complement(3014..3289)
                     /locus_tag="NXY38_RS24860"
                     /old_locus_tag="NXY38_24890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /GO_function="GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="WP_004327436.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            complement(3286..3537)
                     /locus_tag="NXY38_RS24865"
                     /old_locus_tag="NXY38_24895"
     CDS             complement(3286..3537)
                     /locus_tag="NXY38_RS24865"
                     /old_locus_tag="NXY38_24895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295507.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
ORIGIN
        1 atgcatgtat ctgacgttat tttttccgga cgtgattaca atgaaatcat agccgcactc
       61 gattctttgg caggacgttt ttttacttac gaagatgacg aggaatggtg gaagtgcgga
      121 tttatatcta accccaaata taaaaaacgc actggcatta taacctttcg tgtgtctaac
      181 gacctttggg atgtgtttac caagttcgcc aaggggtaca gagaatttga gttaaacaag
      241 gctcttgcgc tacctactgg gtattccctt aggttttaca tgttaatgag tgggcaggtg
      301 taccctttgg atatatccct tgaaaacttg aaagaccgtc ttggcatacc tgcggacaaa
      361 tacaaggaca agaacggaaa agacagaata gatcattttg aggaaagagt tttgaaacca
      421 gcaaaggctg cgcttgatga gagctgccca tacactttca actacgtgaa agtgcgtgaa
      481 aacccaaaca acaaacgtag caaggtgacc gggtttaggt tctacccggt ctatcaacca
      541 cagttcagag atgaagaact ggaagggaaa gaattgcaag caaaggttac agcacgatat
      601 cagatagaca gccatgtgta cgagtacctc cgttattcct gcggcttcac atcggaagag
      661 ataaaccgga acaaagagac attcataacg gcacaagaaa agataaccga ccttatcgga
      721 gaactggctc tcctaaacgg aaaatcacga gaaaagaaca atccgaaagg gtggattata
      781 aacgccctta aagggaaaat caaggataag taacaagatt acccggctga aacactccgg
      841 gtaatcttgt caaatcagag gaacgatttc catttctaca ccaagttctt tcatctgctg
      901 ttgtatttcc tcgctgctta gtttctctct cgccagtgca agcccatgaa aggcgtccca
      961 gcctgccggc ttcgaaacga tactaccgtt taggacggca tgggtgattt cgccgccgga
     1021 cttcgcaccc ttgttcagta tgaagaagaa ccggggttct tcgtgttccg ttgttcccat
     1081 aattcgtaaa gttagatgtt tatttattcc ccttttgttc ccttgcctgc tcttggtagt
     1141 attcataata ctgcttgtag ttgtcccggt ctttggctgc atccgtccaa agatagcaca
     1201 tgaaacaagc gaacaatagg gagataacag cacaaaggat tgagtagaac gaaattcgtt
     1261 tgtccacata accgccgttt ttcattctgt acccctgccg ttcaaagtcc gccaacacgt
     1321 tttttaggcg attttcggca ctttcaaggc ttttcccgtc tatttgtacc tttcgggctg
     1381 ttgcgtcctc tatgcgcttc gtatagactt caacacgctt tagttcttga tacaccagtt
     1441 ctaccgcaag ctgcgggttt acccttggcg ttgtatcttt tcttttccgg gggctgtact
     1501 gtccctgctt aacgttggaa gctgccgctt ccgggtgtga gtttgtttcc atgagatatg
     1561 ttcattgagt tgcacttcag tttgctttgt gtccgctcga tatgggcgag agtgtagcct
     1621 ttccctatct cgcttgcctt atactccgta ccgcttcggg ctgtgacata gtagccgtta
     1681 agtttcccgg tgcttgccct ggcttcccgg actttaaaac ctctcttacc aagttcttcc
     1741 ttgaatttgg taaagtcaaa gccctgcatc ttcttcaata cgccgtccat ggcttccttg
     1801 atttccgctt tgttgacttt gccaatgtcc tgcgactgta caaagttccg ttccttggct
     1861 atggcattgg cggcttccgt tgcctttttc cctatccagt tgtcccggta cagttccccg
     1921 gaaagggaaa cccggtttgc cagtatgtgc aggtgggctt gctctttctt gctctccgta
     1981 ccgctgtgcc ggatgatgat gtactggtgg ttcgccaacc ccatgcgctg catgaagtcg
     2041 ttaccaagtt ccgcccagtc cgcatccgta aaggtggcgc tttcctctat cgaggggctg
     2101 acctcgaaac gtaggcagtt gttttttacg ttcggaaaat caatgtgata cggtttcatt
     2161 tcctgcacca tttccgcacc agtacaccca taaagttcat gccgggctat ctcggtggct
     2221 actgcctgcc cgtttatctc tttggcgagg tcgtactcca atgccgccac accatgtgat
     2281 atgcttttcc ctttccctat catcgtgaga gtattttttt gagctctgta attagtgccc
     2341 ggttctcctc gaacacttcc cggtactggc gaccaccgaa gtagttgttc agccgttgga
     2401 gcgttccttt caactgggct atgtcccgga gaagctgccg ttcctcctcg gtgtacctct
     2461 cccttgggcg cccccaaggg acaaactccg gcagtattcc gatacgctta gactgcaccg
     2521 ggctgcctgc tccgcaagtg cgtccttttc aagttcggta caccggaatg taatacaccg
     2581 gaatgtaatc ttttcgttcc gtcttagttc catgccacaa aggtaatctt aaaatctttt
     2641 tgagcaaagc gagaaaagca agaattgtcc gacaaggaca cttcttgcta tatatacaca
     2701 tgccgcatgg gaatacatcc acgccaaccg cccagcaaaa agccccggcg tgttagaaaa
     2761 tcccccacag cctaacaaat tctaccccat ttctacccaa ggggattaca cgccgcagaa
     2821 gtcatccggg aacatgtctt ccagttcgtc caaatcaatg gtttcttctt cggacacctc
     2881 cacccattca atgttttctt tccctcttat cgcacatgag tacatctcgg cggcggcaag
     2941 agaagagaac acctcgtgca taggctcgcc gttctctaac cagtaaacac aatattcgac
     3001 cataacagtt ttatcattta tcgttgtaat gcccctctac ctccaagatg tagacctcta
     3061 ccacttcctc gtaaatgtca tagattatcc ggtcatgggc ggtaatgtgt cgagaccatg
     3121 taatatcccc accgcccctt aacgcttcgg gatgcccaag cccagtctta gggtgctcta
     3181 acaattcttt gtagattttc ttatacttct tgaacaaatt ggggtttgat ttcttccatt
     3241 tggcaatcac cttatccacc ccgtcggaaa ccctaattgt gtacatcata gactatcgaa
     3301 ataagcgtca atatcctcac tgcttttgag ggtaacacac tttccggatt tgatttcttc
     3361 ccttgccttg tcaatccttg cttgcagctc cggggttatc atcaaatctt cacgaccaac
     3421 ttttaccaaa gcgtaaatct cgtttttcct gcgaattagt acctgctcgc cattgtcagc
     3481 tttggtgaaa gacgctgcga ggttgttacg gtattctctt actgataatg cttccatatc
     3541 tgtttgcttt taaattcagc acaaagatag ctatatttca ataaaataca aacattttgt
     3601 acacaaacgt gtacacgcca taaaaacccg tttccaatcc taccgcccgt tggttggttt
     3661 tgctttgctc tttttcccta tcgtttttct ttttccgaca gtaaatcaac cacttagctc
     3721 tataaattcc ccttgtctgt tataagcatc gtctgtaata tgctctatca cttcttcgca
     3781 aacgcccata aataaaggga ttagaacatg tgtttcccca cactttggga gtttagtccc
     3841 cacactttgg gagtttaaaa gtaaattagt ccccacactt tgggagtttt acccctcttt
     3901 ttttgtttta atgtggggat tgtgtatatt tgcagcaaat caatcgttta tgaaaaagaa
     3961 actacctatt accaagaata aagatgttgt tgtttcatgg gtatatacat ggtcaaaaca
     4021 gcaagacatg tccatacacg aacaaagaat agttcttcgc atactggaag cgtgccaagc
     4081 tgaactaaag ggagtaaaac tgaaagatta tgcaggcacg aaacgcaagt ttgagcatgg
     4141 actttgggat gttgatgcac aa
//
