LOCUS       NZ_CP103342             2421 bp    DNA     circular CON 02-OCT-2023
DEFINITION  Acinetobacter baumannii strain AB105 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP103342
VERSION     NZ_CP103342.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30068511
            Assembly: GCF_025264005.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2421)
  AUTHORS   Guo,T., Yang,L. and Li,G.
  TITLE     Whole genome sequence of AB105 and the relationship with MGEs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2421)
  AUTHORS   Li,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) School of Medicine, Yangzhou University, 88
            Daxue South Road, Yangzhou 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/02/2023 04:16:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,674
            CDSs (total)                      :: 3,579
            Genes (coding)                    :: 3,414
            CDSs (with protein)               :: 3,414
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 165
            CDSs (without protein)            :: 165
            Pseudo Genes (ambiguous residues) :: 0 of 165
            Pseudo Genes (frameshifted)       :: 65 of 165
            Pseudo Genes (incomplete)         :: 85 of 165
            Pseudo Genes (internal stop)      :: 40 of 165
            Pseudo Genes (multiple problems)  :: 20 of 165
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103342.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2421
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB105"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="unnamed5"
                     /geo_loc_name="China:Jiangsu"
                     /collection_date="2022-04-20"
     gene            join(2093..2421,1..25)
                     /locus_tag="NT399_RS18320"
                     /old_locus_tag="NT399_18320"
     CDS             join(2093..2421,1..25)
                     /locus_tag="NT399_RS18320"
                     /old_locus_tag="NT399_18320"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_260784377.1"
                     /translation="MDLRVFPGRSENQKFYVLGYSVMNKNDALVSKDGEFFSVPFADAY
                     LFSNPERAQNYIDQNGLKKRGFKVVKTFQYLRAIGYAPLEHTDKFIQTEMDKEKDMFLN
                     TINFHFDGLDDEF"
                     /name="hypothetical protein"
     gene            411..695
                     /locus_tag="NT399_RS18325"
                     /old_locus_tag="NT399_18325"
     CDS             411..695
                     /locus_tag="NT399_RS18325"
                     /old_locus_tag="NT399_18325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004929869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_153021401.1"
                     /translation="MANQKKRIALTVPDDMDAVLERLSVLTNAPKTKLIMEMLEEYMPV
                     LERTVDALEQIQANKANAPEIAKHFASELLLEGTEKLGIIATEAKKLKE"
                     /name="hypothetical protein"
     gene            774..2000
                     /locus_tag="NT399_RS18330"
                     /old_locus_tag="NT399_18330"
     CDS             774..2000
                     /locus_tag="NT399_RS18330"
                     /old_locus_tag="NT399_18330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001990871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rolling circle replication protein, Rep63
                     protein"
                     /protein_id="WP_260784378.1"
                     /translation="MYGNSDVCQREQASIARGLAVASAGASLGIFTKSQATFKNTGVER
                     LHNFLLQDQACKLLPKHRVCNCLKKRIDKTKDRLVKYNVDRKKAHWSNVQRCGCLWIDP
                     VCAKQITEGRRSELSAALERWKKEFLGGCLLLTLTFSHSLDMPLSASLLGLRDAYARFV
                     GHRRVKEIFKAIGVENKIKGLEILWGQNGWHPHNHILLLTKYTVLGFESYRDELARLWI
                     NSCLKAGLRSPSMEHGLDIRDGSHAEEYISKYGLPDQNKWGLPEEITKGHMKKGRNGGF
                     TPFDLLQLSIEDKPLYGGKLPSKLFQEFAFAIKGSSQLVWGRGLKKLLCIEEKTDQELA
                     EETEKNAIELTSVANYGFTLLTVFQKRHVFLECVARDHEQKDGFSSANALLDELHFKYL
                     ELQQSKQLE"
                     /name="rolling circle replication protein, Rep63 protein"
ORIGIN
        1 tgatgggctt gatgatgaat tttaaagaca agctaacaga taaagaaatt gaatatttac
       61 ttagtctggt cgaatctgat tatgaagaag ttgctcaata tgtcgattct aaagaattgg
      121 aaaaagaaga cagagaacaa tacatctact actgtgaaca atacgccatg atcgacaatc
      181 tacgcaaaaa attggattcc gaacgaatat acctttaccg aacgagtgtc tgcgagtgac
      241 gactccgcaa taaaaattac atagccttcc ctctctgatt acaagctccc atctgcatta
      301 gatcgggagt ttttagtttt tgggttgggg ttcccaaaaa cgtcacgaaa acatttgctt
      361 atttttaaat taatgttact ttatacaaaa atagttactt ggtgaaattc atggccaatc
      421 agaaaaaacg aattgcttta actgtccctg atgatatgga cgctgtttta gagcgtttgt
      481 ccgttttaac taatgcacca aagactaagt taattatgga aatgcttgag gaatacatgc
      541 ctgttcttga gcgtactgta gatgctttag agcagattca agctaataag gctaatgcac
      601 cagagatagc aaaacacttt gctagtgaat tgttattaga agggactgag aaattaggaa
      661 ttattgcaac tgaggcgaaa aaacttaagg aataataata aagctctagt gactggtcct
      721 cactagagct ttggaatcct gtagttgtac ggcaacattt aggagtaact ctattgtacg
      781 gtaacagtga cgtatgtcaa agggagcagg cgagcattgc gcgagggctc gcagtcgcaa
      841 gcgcaggcgc ttccctaggt atatttacga aatctcaggc cacttttaaa aatacgggtg
      901 ttgagcgtct tcataatttt cttttacaag accaagcttg caaacttttg cctaagcatc
      961 gcgtatgtaa ctgcttaaaa aaacgcattg ataaaacaaa agatcgcctt gttaaataca
     1021 acgtagatcg taaaaaagca cactggtcga atgtacagcg ttgtggctgt ctttggattg
     1081 atcctgtttg tgctaaacaa attacagaag gaagacgatc agagctttct gctgctcttg
     1141 aacgttggaa aaaggaattt ttaggcggtt gccttcttct tactcttact ttctcacatt
     1201 ctcttgatat gcccctttct gcttctcttt tagggcttag ggatgcttat gcccgttttg
     1261 ttggccatag gcgtgttaaa gagattttta aggctattgg tgttgaaaat aaaattaaag
     1321 ggctagaaat cctttggggt caaaatggtt ggcatcctca caatcatatt ttgcttttaa
     1381 ctaaatacac tgttctagga tttgagtctt atcgagatga gttagcacgc ctttggatta
     1441 attcttgtct taaagctggt ctacgttcac caagcatgga acatggtctg gacattcgtg
     1501 atggatcaca tgcagaggaa tacatcagta agtatggctt acctgatcaa aataaatggg
     1561 gtcttcctga agaaatcact aaaggtcaca tgaagaaagg ccgtaacggt ggttttactc
     1621 cttttgacct tttacagcta tctattgaag ataaaccgtt atacggtggc aaattgcctt
     1681 caaaattatt ccaagaattt gcttttgcga ttaaaggctc atctcagctt gtttggggtc
     1741 gtggccttaa aaaactgctt tgtattgaag aaaaaacaga tcaggaatta gcagaagaaa
     1801 cggaaaaaaa tgcaattgaa ttaacttctg tcgctaatta tggatttact cttttgactg
     1861 ttttccaaaa aagacatgtc tttttagagt gtgttgctag agatcatgag cagaaggatg
     1921 gtttctccag tgctaatgct cttttggatg aactccattt taaatattta gaactccaac
     1981 aatctaaaca acttgaatag ttgcaaggac gacaatgacg aggaggagct gcgacaacga
     2041 ggaagcggag gacgcagcaa aaatacaagt tttattatta tgaggtttta ttatggattt
     2101 acgtgttttc cctggacgaa gtgagaatca aaaattttac gtcttaggct attcagttat
     2161 gaataaaaat gatgcccttg tttctaagga tggagagttt ttttctgttc cttttgcaga
     2221 tgcttattta ttttcaaacc ctgaacgtgc tcaaaattac atagatcaaa acggtcttaa
     2281 aaaacgtggt tttaaggttg ttaaaacttt ccaatacctt agagctattg gttatgcacc
     2341 acttgaacat actgataagt ttattcaaac agaaatggat aaagaaaaag atatgttttt
     2401 aaacactatt aactttcact t
//
