LOCUS       NZ_CP103273             4131 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Bacteroides faecis strain BFG-513 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP103273
VERSION     NZ_CP103273.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30323416
            Assembly: GCF_024760225.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides faecis
  ORGANISM  Bacteroides faecis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4131)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4131)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 103x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 06:19:42
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,217
            CDSs (total)                      :: 5,128
            Genes (coding)                    :: 4,993
            CDSs (with protein)               :: 4,993
            Genes (RNA)                       :: 89
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 74 of 135
            Pseudo Genes (incomplete)         :: 65 of 135
            Pseudo Genes (internal stop)      :: 20 of 135
            Pseudo Genes (multiple problems)  :: 21 of 135
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103273.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4131
                     /organism="Bacteroides faecis"
                     /mol_type="genomic DNA"
                     /strain="BFG-513"
                     /host="Homo sapiens"
                     /db_xref="taxon:674529"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2007-11-21"
     gene            join(3884..4131,1..4)
                     /locus_tag="NXW99_RS26055"
                     /old_locus_tag="NXW99_26055"
     CDS             join(3884..4131,1..4)
                     /locus_tag="NXW99_RS26055"
                     /old_locus_tag="NXW99_26055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295507.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
     gene            1..276
                     /locus_tag="NXW99_RS26060"
                     /old_locus_tag="NXW99_26060"
     CDS             1..276
                     /locus_tag="NXW99_RS26060"
                     /old_locus_tag="NXW99_26060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /GO_function="GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="WP_004327436.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            287..484
                     /locus_tag="NXW99_RS26065"
                     /old_locus_tag="NXW99_26065"
     CDS             287..484
                     /locus_tag="NXW99_RS26065"
                     /old_locus_tag="NXW99_26065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295503.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            677..976
                     /gene="mbpA"
                     /locus_tag="NXW99_RS26195"
     CDS             677..976
                     /gene="mbpA"
                     /locus_tag="NXW99_RS26195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpA"
                     /protein_id="WP_004327437.1"
                     /translation="MELRRNEKITFRCTELEKDALAEQAARCSLSVSEYCRSLSLGGRP
                     RERYTEEERQLLRDIAQLKGTLQRLNNYFGGRQYREVFEENRALITELKKILSR"
                     /name="mbpA"
     gene            973..1767
                     /gene="mbpB"
                     /locus_tag="NXW99_RS26070"
                     /old_locus_tag="NXW99_26070"
     CDS             973..1767
                     /gene="mbpB"
                     /locus_tag="NXW99_RS26070"
                     /old_locus_tag="NXW99_26070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpB"
                     /protein_id="WP_007560590.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="mbpB"
     gene            1724..2159
                     /gene="mbpC"
                     /locus_tag="NXW99_RS26075"
                     /old_locus_tag="NXW99_26075"
                     /pseudo=""
     CDS             1724..2159
                     /gene="mbpC"
                     /locus_tag="NXW99_RS26075"
                     /old_locus_tag="NXW99_26075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpC"
                     /name="mbpC"
     gene            2179..2409
                     /locus_tag="NXW99_RS26080"
                     /old_locus_tag="NXW99_26080"
     CDS             2179..2409
                     /locus_tag="NXW99_RS26080"
                     /old_locus_tag="NXW99_26080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295510.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="hypothetical protein"
     gene            complement(2446..3471)
                     /locus_tag="NXW99_RS26085"
                     /old_locus_tag="NXW99_26085"
     CDS             complement(2446..3471)
                     /locus_tag="NXW99_RS26085"
                     /old_locus_tag="NXW99_26085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_004295509.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
ORIGIN
        1 atgatgtaca caattagggt ttccgacggg gtggataagg tgattgccaa atggaagaaa
       61 tcaaacccca atttgttcaa gaagtataag aaaatctaca aagaattgtt agagcaccct
      121 aagactgggc ttgggcatcc cgaagcgtta aggggcggtg gggatattac atggtctcga
      181 cacattaccg cccatgaccg gataatctat gacatttacg aggaagtggt agaggtctac
      241 atcttggagg tagaggggca ttacaacgat aaatgataaa actgttatgg tcgaatattg
      301 tgtttactgg ttagagaacg gcgagcctat gcacgaggtg ttctcttctc ttgccgccgc
      361 cgagatgtac tcatgtgcga taagagggaa agaaaacatt gaatgggtgg aggtgtccga
      421 agaagaaacc attgatttgg acgaactgga agacatgttc ccggatgact tctgcggcgt
      481 gtaatcccct tgggtagaaa tggggtagaa tttgttaggc tgtgggggat tttctaacac
      541 gccggggctt tttgctgggc ggttggcgtg gatgtattcc catgcggcat gtgtatatat
      601 agcaagaagt gtccttgtcg gacaattctt gcttttctcg ctttgctcaa aaagatttta
      661 agattacctt tgtggcatgg aactaagacg gaacgaaaag attacattcc ggtgtaccga
      721 acttgaaaag gacgcacttg cggagcaggc agcccggtgc agtctaagcg tatcggaata
      781 ctgccggagt ttgtcccttg gggggcgccc aagggagagg tacaccgagg aggaacggca
      841 gcttctccgg gacatagccc agttgaaagg aacgctccaa cggctgaaca actacttcgg
      901 tggtcgccag taccgggaag tgttcgagga gaaccgggca ctaattacag agctcaaaaa
      961 aatactctca cgatgatagg gaaagggaaa agcatatcac atggtgtggc ggcattggag
     1021 tacgacctcg ccaaagagat aaacgggcag gcagtagcca ccgagatagc ccggcatgaa
     1081 ctttatgggt gtactggtgc ggaaatggtg caggaaatga aaccgtatca cattgatttt
     1141 ccgaacgtaa aaaacaactg cctacgtttc gaggtcagcc cctcgataga ggaaagcgcc
     1201 acctttacgg atgcggactg ggcggaactt ggtaacgact tcatgcagcg catggggttg
     1261 gcgaaccacc agtacatcat catccggcac agcggtacgg agagcaagaa agagcaagcc
     1321 cacctgcaca tactggcaaa ccgggtttcc ctttccgggg aactgtaccg ggacaactgg
     1381 atagggaaaa aggcaacgga agccgccaat gccatagcca aggaacggaa ctttgtacag
     1441 tcgcaggaca ttggcaaagt caacaaagcg gaaatcaagg aagccatgga cggcgtattg
     1501 aagaagatgc agggctttga ctttaccaaa ttcaaggaag aacttggtaa gagaggtttt
     1561 aaagtccggg aagccagggc aagcaccggg aaacttaacg gctactatgt cacagcccga
     1621 agcggtacgg agtataaggc aagcgagata gggaaaggct acactctcgc ccatatcgag
     1681 cggacacaaa gcaaactgaa gtgcaactca atgaacatat ctcatggaaa caaactcaca
     1741 cccggaagcg gcagcttcca acgttaagca gggacagtac agcccccgga aaagaaaaga
     1801 tacaacgcca agggtaaacc cgcagcttgc ggtagaactg gtgtatcaag aactaaagcg
     1861 tgttgaagtc tatacgaagc gcatagagga cgcaacagcc cgaaaggtac aaatagacgg
     1921 gaaaagcctt gaaagtgccg aaaatcgcct aaaaaacgtg ttggcggact ttgaacggca
     1981 ggggtacaga atgaaaaacg gcggttatgt ggacaaacga atttcgttct actcaatcct
     2041 ttgtgctgtt atctccctat tgttcgcttg tttcatgtgc tatctttgga cggatgcagc
     2101 caaagcagta ttatgaatac taccaagagc aggcaaggga acaaaagggg aataaataaa
     2161 catctaactt tacgaattat gggaacaacg gaacacgaag aaccccggtt cttcttcata
     2221 ctgaacaagg gtgcgaagtc cggcggcgaa atcacccatg ccgtcctaaa cggtagtatc
     2281 gtttcgaagc cggcaggctg ggacgccttt catgggcttg cactggcgag agagaaacta
     2341 agcagcgagg aaatacaaca gcagatgaaa gaacttggtg tagaaatgga aatcgttcct
     2401 ctgatttgac aagattaccc ggagtgtttc agccgggtaa tcttgttact tatccttgat
     2461 tttcccttta agggcgttta taatccaccc tttcggattg ttcttttctc gtgattttcc
     2521 gtttaggaga gccagttctc cgataaggtc ggttatcttt tcttgtgccg ttatgaatgt
     2581 ctctttgttc cggtttatct cttccgatgt gaagccgcag gaataacgga ggtactcgta
     2641 cacatggctg tctatctgat atcgtgctgt aacctttgct tgcaattctt tcccttccag
     2701 ttcttcatct ctgaactgtg gttgatagac cgggtagaac ctaaacccgg tcaccttgct
     2761 acgtttgttg tttgggtttt cacgcacttt cacgtagttg aaagtgtatg ggcagctctc
     2821 atcaagcgca gcctttgctg gtttcaaaac tctttcctca aaatgatcta ttctgtcttt
     2881 tccgttcttg tccttgtatt tgtccgcagg tatgccaaga cggtctttca agttttcaag
     2941 ggatatatcc aaagggtaca cctgcccact cattaacatg taaaacctaa gggaataccc
     3001 agtaggtagc gcaagagcct tgtttaactc aaattctctg taccccttgg cgaacttggt
     3061 aaacacatcc caaaggtcgt tagacacacg aaaggttata atgccagtgc gttttttata
     3121 ttttgggtta gatataaatc cgcacttcca ccattcctcg tcatcttcgt aagtaaaaaa
     3181 acgtcctgcc aaagaatcga gtgcggctat gatttcattg taatcacgtc cggaaaaaat
     3241 aacgtcagat acatgcattt gtgcatcaac atcccaaagt ccatgctcaa acttgcgttt
     3301 cgtgcctgca taatctttca gttttactcc ctttagttca gcttggcacg cttccagtat
     3361 gcgaagaact attctttgtt cgtgtatgga catgtcttgc tgttttgacc atgtatatac
     3421 ccatgaaaca acaacatctt tattcttggt aataggtagt ttctttttca taaacgattg
     3481 atttgctgca aatatacaca atccccacat taaaacaaaa aaagaggggt aaaactccca
     3541 aagtgtgggg actaatttac ttttaaactc ccaaagtgtg gggactaaac tcccaaagtg
     3601 tggggaaaca catgttctaa tccctttatt tatgggcgtt tgcgaagaag tgatagagca
     3661 tattacagac gatgcttata acagacaagg ggaatttata gagctaagtg gttgatttac
     3721 tgtcggaaaa agaaaaacga tagggaaaaa gagcaaagca aaaccaacca acgggcggta
     3781 ggattggaaa cgggttttta tggcgtgtac acgtttgtgt acaaaatgtt tgtattttat
     3841 tgaaatatag ctatctttgt gctgaattta aaagcaaaca gatatggaag cattatcagt
     3901 aagagaatac cgtaacaacc tcgcagcgtc tttcaccaaa gctgacaatg gcgagcaggt
     3961 actaattcgc aggaaaaacg agatttacgc tttggtaaaa gttggtcgtg aagatttgat
     4021 gataaccccg gagctgcaag caaggattga caaggcaagg gaagaaatca aatccggaaa
     4081 gtgtgttacc ctcaaaagca gtgaggatat tgacgcttat ttcgatagtc t
//
