LOCUS       NZ_CP103272             5026 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Bacteroides faecis strain BFG-513 plasmid unnamed1, complete
            sequence.
ACCESSION   NZ_CP103272
VERSION     NZ_CP103272.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30323416
            Assembly: GCF_024760225.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides faecis
  ORGANISM  Bacteroides faecis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 5026)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5026)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 103x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 06:19:42
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,217
            CDSs (total)                      :: 5,128
            Genes (coding)                    :: 4,993
            CDSs (with protein)               :: 4,993
            Genes (RNA)                       :: 89
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 74 of 135
            Pseudo Genes (incomplete)         :: 65 of 135
            Pseudo Genes (internal stop)      :: 20 of 135
            Pseudo Genes (multiple problems)  :: 21 of 135
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103272.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5026
                     /organism="Bacteroides faecis"
                     /mol_type="genomic DNA"
                     /strain="BFG-513"
                     /host="Homo sapiens"
                     /db_xref="taxon:674529"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2007-11-21"
     gene            54..1157
                     /locus_tag="NXW99_RS26035"
                     /old_locus_tag="NXW99_26035"
     CDS             54..1157
                     /locus_tag="NXW99_RS26035"
                     /old_locus_tag="NXW99_26035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_007219893.1"
                     /translation="MGATSIHVQAVKPGSEIHNFREKELDYVRPELSHLNESWVGDSIS
                     HRLESAKQRYLDTVGQKMQAKAAPIREGVIVIKQETTMQELQQFATVCKERFGIEAFQI
                     HIHKDEGYMNAKQWTPNLHAHVVFDWTQPNGKSVRLSRDDMAELQTIASETLGMERGVS
                     SDRKHLSAMQYKTECAKEQLQELSNDISSALDKHKDVQNQLLQLQKELRSIETKKNVQK
                     LISKASEKFYGLIGKTVNDREKDALKAKVKALEGENEQLSDRLGKAILEKEQNGTKAFK
                     AENDKEYYRQQMDNARTTSNRLRTENQELKTETKELKKELGKMKDLFNSEQLEALRHHF
                     PNISKAMEEGKDLLKQITRSRGFGMGM"
                     /name="plasmid recombination protein"
     gene            1597..2187
                     /locus_tag="NXW99_RS26040"
                     /old_locus_tag="NXW99_26040"
     CDS             1597..2187
                     /locus_tag="NXW99_RS26040"
                     /old_locus_tag="NXW99_26040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008670455.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_149883086.1"
                     /translation="MENKKAVKLTDFQKNEENPFMKQAIEGIENHVVKKYKSNSGGDKR
                     AVVALADTETGEVFKTSFIRQIEVDEEQFTKLYLSNFAAFFDLSQAAIRVFGYFMTCMK
                     PKNDLIIFNRKKCLEYTKYKTDKAVYKGLAELVKAEIIARGPADNLWFINPLIVFNGDR
                     VTFAKTYVRKKTLAAQKKEEAEKRQLSLGFDEL"
                     /name="replication/maintenance protein RepL"
     gene            2805..3908
                     /locus_tag="NXW99_RS26045"
                     /old_locus_tag="NXW99_26045"
     CDS             2805..3908
                     /locus_tag="NXW99_RS26045"
                     /old_locus_tag="NXW99_26045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_007219893.1"
                     /translation="MGATSIHVQAVKPGSEIHNFREKELDYVRPELSHLNESWVGDSIS
                     HRLESAKQRYLDTVGQKMQAKAAPIREGVIVIKQETTMQELQQFATVCKERFGIEAFQI
                     HIHKDEGYMNAKQWTPNLHAHVVFDWTQPNGKSVRLSRDDMAELQTIASETLGMERGVS
                     SDRKHLSAMQYKTECAKEQLQELSNDISSALDKHKDVQNQLLQLQKELRSIETKKNVQK
                     LISKASEKFYGLIGKTVNDREKDALKAKVKALEGENEQLSDRLGKAILEKEQNGTKAFK
                     AENDKEYYRQQMDNARTTSNRLRTENQELKTETKELKKELGKMKDLFNSEQLEALRHHF
                     PNISKAMEEGKDLLKQITRSRGFGMGM"
                     /name="plasmid recombination protein"
     gene            4349..4940
                     /locus_tag="NXW99_RS26050"
                     /old_locus_tag="NXW99_26050"
                     /pseudo=""
     CDS             4349..4940
                     /locus_tag="NXW99_RS26050"
                     /old_locus_tag="NXW99_26050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295513.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /name="replication/maintenance protein RepL"
     Typing          1565..2177
                     /name="rep_cluster_1868"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.377"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          4317..4930
                     /name="rep_cluster_1868"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.541"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          55..1154
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.275"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2806..3905
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.275"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cctgtcagcc ggctgtcacc ggctgttatc gattgtcaca aaaatgttaa cttatgggag
       61 caacaagtat tcatgtacaa gcagtgaagc cggggagtga gattcacaac tttagggaaa
      121 aagagttgga ctatgttcgt cccgaactta gtcatttgaa tgaaagctgg gttggagata
      181 gcatctccca tcggctggaa agtgcgaaac aaagatatct cgatacggtt gggcagaaga
      241 tgcaggctaa agccgcaccc atacgagagg gagtaatagt aatcaaacaa gaaaccacca
      301 tgcaggaact ccagcagttt gccacggtct gcaaagaacg tttcggtatc gaagcatttc
      361 aaatccatat acacaaggac gaaggataca tgaacgcaaa gcaatggaca cctaaccttc
      421 atgcccatgt agttttcgat tggacgcagc cgaatgggaa aagtgtgcgt ttatcgcgtg
      481 atgacatggc agaactccaa accatagcat ctgaaacact gggcatggaa cgtggcgttt
      541 cttctgaccg caaacactta tcggctatgc agtacaagac cgaatgtgcg aaagaacagc
      601 ttcaggaact atcaaacgat atatccagtg cattagacaa acacaaggac gtacaaaacc
      661 agcttcttca gcttcagaaa gaactacgtt ccattgaaac aaagaagaac gtccaaaaac
      721 tcatttctaa ggcttcagag aagttttacg gcttgattgg aaaaacagtc aacgataggg
      781 aaaaggatgc cttaaaagcc aaagtaaagg ctttagaggg ggaaaatgaa cagctatccg
      841 atagactggg aaaggctata cttgaaaaag agcaaaacgg cacaaaggca ttcaaagccg
      901 agaatgacaa ggagtattat agacaacaaa tggacaacgc aaggacaacc agtaaccgat
      961 taaggacgga gaaccaagaa ctaaagaccg aaaccaagga attgaaaaaa gaacttggta
     1021 agatgaaaga cttgttcaat tccgaacaac tggaggcttt aaggcatcat ttcccaaaca
     1081 tatcaaaagc tatggaagag gggaaagacc tactcaagca aatcaccaga agcagaggtt
     1141 tcggtatggg tatgtaaccc cccccccgcc cccaaagggg gagcgaccaa acggcagcct
     1201 ctctcaatgg agtgttacgt cgttcggatt cggaagaaat tttgcagggt tcggaaaacg
     1261 gttgtgtgct tattctaaaa aaagtttatg gtgtggcgct cgtcgggacg ggtggtcccg
     1321 ccccttgccg ctgggcgctc cccgaccgat gatttttaag tgactgattt tgtgctgttt
     1381 tgggggtata ttaagaatag aagaaataga ataagttaag tacttgatac acaatatagg
     1441 gcattttcca tattggaaat tctcattttc caatctagaa aatactgatt tcctaatata
     1501 atactaaaca ggaaaataat atttccctta atattgtttt tatggaaaat aatagtttac
     1561 tttgtggaga ataatatttc ccaaaaacac atcaaaatgg aaaataaaaa agcagttaag
     1621 ttaaccgatt ttcaaaagaa cgaagaaaat ccttttatga aacaagctat agaaggtatt
     1681 gaaaatcatg ttgttaaaaa gtataagagt aatagtggtg gcgataagag agccgtagta
     1741 gctttagccg acactgaaac tggagaagtg tttaagactt cgtttatccg tcaaatagaa
     1801 gtagatgaag aacaattcac taaattgtat ctttctaact ttgctgcatt ctttgaccta
     1861 tcacaagcag ctattcgggt ttttggttac tttatgacct gcatgaaacc caaaaatgat
     1921 ttaatcatct tcaatagaaa aaaatgccta gaatatacca aatacaaaac agacaaagcc
     1981 gtttataaag gacttgcaga acttgtaaaa gctgaaatca tagcccgagg accagccgat
     2041 aatctttggt ttattaatcc tctgatagta ttcaatggtg accgagtgac atttgctaaa
     2101 acatacgttc ggaaaaagac tttagctgcc caaaagaaag aagaagcaga gaaacgacag
     2161 ttatcacttg gttttgatga actgtaacac tccattgagt gaagctgccg tttggtcgct
     2221 ccccctttgg gggcgggggg ggatagataa agttcctcta tgtaaagtta taatggggga
     2281 tgaaaggcaa ggttcgctaa ccttaccccg attgtttatg cttcccagca ttcaatctat
     2341 ccccgtttat gggtttctct ttcaccctac aaagataacc tcatggggga aaaatgtcca
     2401 agaatatggg gtaaaaacta tcaagtcggt agaaaataag tatctttgaa gtacattttt
     2461 agtagaggta ctggtatgcc tagacgaagc agataggcaa aaataaagcc gctggagatg
     2521 tcggatgtcc gtcaattaac tccagcggct tgtattttgg taactctccc gtatcggtcg
     2581 gctaccgttt ggtcagcaac aaaggtagta ctttattgtc gcaaatccaa atgttttccc
     2641 ctttatttgt gcatttacag aacatttgct aacttcgcac ctatgcagta tggtgatagc
     2701 acactagcac cctaaagggt gcgtgtgtaa ggggacaagc ccccttaacc ccctgtcagc
     2761 cggctgtcac cggctgttat cgattgtcac aaaaatgtta acttatggga gcaacaagta
     2821 ttcatgtaca agcagtgaag ccggggagtg agattcacaa ctttagggaa aaagagttgg
     2881 actatgttcg tcccgaactt agtcatttga atgaaagctg ggttggagat agcatctccc
     2941 atcggctgga aagtgcgaaa caaagatatc tcgatacggt tgggcagaag atgcaggcta
     3001 aagccgcacc catacgagag ggagtaatag taatcaaaca agaaaccacc atgcaggaac
     3061 tccagcagtt tgccacggtc tgcaaagaac gtttcggtat cgaagcattt caaatccata
     3121 tacacaagga cgaaggatac atgaacgcaa agcaatggac acctaacctt catgcccatg
     3181 tagttttcga ttggacgcag ccgaatggga aaagtgtgcg tttatcgcgt gatgacatgg
     3241 cagaactcca aaccatagca tctgaaacac tgggcatgga acgtggcgtt tcttctgacc
     3301 gcaaacactt atcggctatg cagtacaaga ccgaatgtgc gaaagaacag cttcaggaac
     3361 tatcaaacga tatatccagt gcattagaca aacacaagga cgtacaaaac cagcttcttc
     3421 agcttcagaa agaactacgt tccattgaaa caaagaagaa cgtccaaaaa ctcatttcta
     3481 aggcttcaga gaagttttac ggcttgattg gaaaaacagt caacgatagg gaaaaggatg
     3541 ccttaaaagc caaagtaaag gctttagagg gggaaaatga acagctatcc gatagactgg
     3601 gaaaggctat acttgaaaaa gagcaaaacg gcacaaaggc attcaaagcc gagaatgaca
     3661 aggagtatta tagacaacaa atggacaacg caaggacaac cagtaaccga ttaaggacgg
     3721 agaaccaaga actaaagacc gaaaccaagg aattgaaaaa agaacttggt aagatgaaag
     3781 acttgttcaa ttccgaacaa ctggaggctt taaggcatca tttcccaaac atatcaaaag
     3841 ctatggaaga ggggaaagac ctactcaagc aaatcaccag aagcagaggt ttcggtatgg
     3901 gtatgtaacc ccccccccgc cccccaaagg gggagcgacc aaacggcagc ctctctcaat
     3961 ggagtgttac gtcgttcgga ttcggaagaa attttgcagg gttcggaaaa cggttgtgtg
     4021 cttattctaa aaaaagttta tggtgtggcg ctcgtcggga cgggtggtcc cgccccttgc
     4081 cgctgggcgc tccccgaccg atgattttta agtgactgat tttgtgctgt tttgggggta
     4141 tattaagaat agaagaaata gaataagtta agtacttgat acacaatata gggcattttc
     4201 catattggaa attctcattt tccaatctag aaaatactga tttcctaata taatactaaa
     4261 caggaaaata atatttccct taatattgtt tttatggaaa ataatagttt actttgtgga
     4321 gaataatatt tcccaaaaac acatcaaaat ggaaaataaa aaagcagtta agttaaccga
     4381 ttttcaaaag aacgaagaaa atccttttat gaaacaagct atagaaggta ttgaaaatca
     4441 tgttgttaaa aagtagtaag agtaatagtg gtggcgataa gagagccgta gtagctttag
     4501 ccgacactga aactggagaa gtgtttaaga cttcgtttat ccgtcaaata gaagtagatg
     4561 aagaacaatt cactaaattg tatctttcta actttgctgc attctttgac ctatcacaag
     4621 cagctattcg ggtttttggt tactttatga cctgcatgaa acccaaaaat gatttaatca
     4681 tcttcaatag aaaaaaatgc ctagaatata ccaaatacaa aacagacaaa gccgtttata
     4741 aaggacttgc agaacttgta aaagctgaaa tcatagcccg aggaccagcc gataatcttt
     4801 ggtttattaa tcctctgata gtattcaatg gtgaccgagt gacatttgct aaaacatacg
     4861 ttcggaaaaa gactttagct gcccaaaaga aagaagaagc agagaaacga caattatcac
     4921 ttggctttga tgaacagtaa cactccattg agtgaagctg ccgtttggtc gctccccctt
     4981 tggggggggg ggggggatag ataaagttcc tctatgtaaa gttata
//
