LOCUS       NZ_CP103241             4195 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Bacteroides thetaiotaomicron strain BFG-130 plasmid unnamed3,
            complete sequence.
ACCESSION   NZ_CP103241
VERSION     NZ_CP103241.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30323177
            Assembly: GCF_024759965.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides thetaiotaomicron
  ORGANISM  Bacteroides thetaiotaomicron
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4195)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4195)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 21x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 06:54:55
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,403
            CDSs (total)                      :: 5,301
            Genes (coding)                    :: 4,984
            CDSs (with protein)               :: 4,984
            Genes (RNA)                       :: 102
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 317
            CDSs (without protein)            :: 317
            Pseudo Genes (ambiguous residues) :: 0 of 317
            Pseudo Genes (frameshifted)       :: 269 of 317
            Pseudo Genes (incomplete)         :: 51 of 317
            Pseudo Genes (internal stop)      :: 16 of 317
            Pseudo Genes (multiple problems)  :: 17 of 317
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103241.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4195
                     /organism="Bacteroides thetaiotaomicron"
                     /mol_type="genomic DNA"
                     /strain="BFG-130"
                     /host="Homo sapiens"
                     /db_xref="taxon:818"
                     /plasmid="unnamed3"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="1985-10-21"
     gene            join(3948..4195,1..4)
                     /locus_tag="NXV61_RS27010"
                     /old_locus_tag="NXV61_27010"
     CDS             join(3948..4195,1..4)
                     /locus_tag="NXV61_RS27010"
                     /old_locus_tag="NXV61_27010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295507.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
     gene            1..276
                     /locus_tag="NXV61_RS27015"
                     /old_locus_tag="NXV61_27015"
     CDS             1..276
                     /locus_tag="NXV61_RS27015"
                     /old_locus_tag="NXV61_27015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /GO_function="GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="WP_004327436.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            287..484
                     /locus_tag="NXV61_RS27020"
                     /old_locus_tag="NXV61_27020"
     CDS             287..484
                     /locus_tag="NXV61_RS27020"
                     /old_locus_tag="NXV61_27020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295503.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            677..976
                     /gene="mbpA"
                     /locus_tag="NXV61_RS27240"
     CDS             677..976
                     /gene="mbpA"
                     /locus_tag="NXV61_RS27240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpA"
                     /protein_id="WP_004327437.1"
                     /translation="MELRRNEKITFRCTELEKDALAEQAARCSLSVSEYCRSLSLGGRP
                     RERYTEEERQLLRDIAQLKGTLQRLNNYFGGRQYREVFEENRALITELKKILSR"
                     /name="mbpA"
     gene            973..1767
                     /gene="mbpB"
                     /locus_tag="NXV61_RS27025"
                     /old_locus_tag="NXV61_27025"
     CDS             973..1767
                     /gene="mbpB"
                     /locus_tag="NXV61_RS27025"
                     /old_locus_tag="NXV61_27025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpB"
                     /protein_id="WP_007560590.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="mbpB"
     gene            1724..2176
                     /gene="mbpC"
                     /locus_tag="NXV61_RS27030"
                     /old_locus_tag="NXV61_27030"
     CDS             1724..2176
                     /gene="mbpC"
                     /locus_tag="NXV61_RS27030"
                     /old_locus_tag="NXV61_27030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpC"
                     /protein_id="WP_004295511.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="mbpC"
     gene            2196..2426
                     /locus_tag="NXV61_RS27035"
                     /old_locus_tag="NXV61_27035"
     CDS             2196..2426
                     /locus_tag="NXV61_RS27035"
                     /old_locus_tag="NXV61_27035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295510.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="hypothetical protein"
     gene            complement(2463..3535)
                     /locus_tag="NXV61_RS27040"
                     /old_locus_tag="NXV61_27040"
                     /pseudo=""
     CDS             complement(2463..3535)
                     /locus_tag="NXV61_RS27040"
                     /old_locus_tag="NXV61_27040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
ORIGIN
        1 atgatgtaca caattagggt ttccgacggg gtggataagg tgattgccaa atggaagaaa
       61 tcaaacccca atttgttcaa gaagtataag aaaatctaca aagaattgtt agagcaccct
      121 aagactgggc ttgggcatcc cgaagcgtta aggggcggtg gggatattac atggtctcga
      181 cacattaccg cccatgaccg gataatctat gacatttacg aggaagtggt agaggtctac
      241 atcttggagg tagaggggca ttacaacgat aaatgataaa actgttatgg tcgaatattg
      301 tgtttactgg ttagagaacg gcgagcctat gcacgaggtg ttctcttctc ttgccgccgc
      361 cgagatgtac tcatgtgcga taagagggaa agaaaacatt gaatgggtgg aggtgtccga
      421 agaagaaacc attgatttgg acgaactgga agacatgttc ccggatgact tctgcggcgt
      481 gtaatcccct tgggtagaaa tggggtagaa tttgttaggc tgtgggggat tttctaacac
      541 gccggggctt tttgctgggc ggttggcgtg gatgtattcc catgcggcat gtgtatatat
      601 agcaagaagt gtccttgtcg gacaattctt gcttttctcg ctttgctcaa aaagatttta
      661 agattacctt tgtggcatgg aactaagacg gaacgaaaag attacattcc ggtgtaccga
      721 acttgaaaag gacgcacttg cggagcaggc agcccggtgc agtctaagcg tatcggaata
      781 ctgccggagt ttgtcccttg gggggcgccc aagggagagg tacaccgagg aggaacggca
      841 gcttctccgg gacatagccc agttgaaagg aacgctccaa cggctgaaca actacttcgg
      901 tggtcgccag taccgggaag tgttcgagga gaaccgggca ctaattacag agctcaaaaa
      961 aatactctca cgatgatagg gaaagggaaa agcatatcac atggtgtggc ggcattggag
     1021 tacgacctcg ccaaagagat aaacgggcag gcagtagcca ccgagatagc ccggcatgaa
     1081 ctttatgggt gtactggtgc ggaaatggtg caggaaatga aaccgtatca cattgatttt
     1141 ccgaacgtaa aaaacaactg cctacgtttc gaggtcagcc cctcgataga ggaaagcgcc
     1201 acctttacgg atgcggactg ggcggaactt ggtaacgact tcatgcagcg catggggttg
     1261 gcgaaccacc agtacatcat catccggcac agcggtacgg agagcaagaa agagcaagcc
     1321 cacctgcaca tactggcaaa ccgggtttcc ctttccgggg aactgtaccg ggacaactgg
     1381 atagggaaaa aggcaacgga agccgccaat gccatagcca aggaacggaa ctttgtacag
     1441 tcgcaggaca ttggcaaagt caacaaagcg gaaatcaagg aagccatgga cggcgtattg
     1501 aagaagatgc agggctttga ctttaccaaa ttcaaggaag aacttggtaa gagaggtttt
     1561 aaagtccggg aagccagggc aagcaccggg aaacttaacg gctactatgt cacagcccga
     1621 agcggtacgg agtataaggc aagcgagata gggaaaggct acactctcgc ccatatcgag
     1681 cggacacaaa gcaaactgaa gtgcaactca atgaacatat ctcatggaaa caaactcaca
     1741 cccggaagcg gcagcttcca acgttaagca gggacagtac agcccccgga aaagaaaaga
     1801 tacaacgcca agggtaaacc cgcagcttgc ggtagaactg gtgtatcaag aactaaagcg
     1861 tgttgaagtc tatacgaagc gcatagagga cgcaacagcc cgaaaggtac aaatagacgg
     1921 gaaaagcctt gaaagtgccg aaaatcgcct aaaaaacgtg ttggcggact ttgaacggca
     1981 ggggtacaga atgaaaaacg gcggttatgt ggacaaacga atttcgttct actcaatcct
     2041 ttgtgctgtt atctccctat tgttcgcttg tttcatgtgc tatctttgga cagatgcagc
     2101 caaagaccgg gacaactaca agcagtatta tgaatactac caagagcagg caagggaaca
     2161 aaaggggaat aaataaacat ctaactttac gaattatggg aacaacggaa cacgaagaac
     2221 cccggttctt cttcatactg aacaagggtg cgaagtccgg cggcgaaatc acccatgccg
     2281 tcctaaacgg tagtatcgtt tcgaagccgg caggctggga cgcctttcat gggcttgcac
     2341 tggcgagaga gaaactaagc agcgaggaaa tacaacagca gatgaaagaa cttggtgtag
     2401 aaatggaaat cgttcctctg atttgacaag attacccgga gtgtttcagc cgggtaatct
     2461 tgttacttat ccttgatttt ccctttaagg gcgtttataa tccacccttt cggattgttc
     2521 ttttctcgtg attttccgtt tttataatcc accctttcgg attgttcttt tctcgtgatt
     2581 ttccgtttag gagagccagt tctccgataa ggtcggttat cttttcttgt gccgttatga
     2641 atgtctcttt gttccggttt atctcttccg atgtgaagcc gcaggaataa cggaggtact
     2701 cgtacacatg gctgtctatc tgatatcgtg ctgtaacctt tgcttgcaat tctttccctt
     2761 ccagttcttc atctctgaac tgtggttgat agaccgggta gaacctaaac ccggtcacct
     2821 tgctacgttt gttgtttggg ttttcacgca ctttcacgta gttgaaagtg tatgggcagc
     2881 tctcatcaag cgcagccttt gctggtttca aaactctttc ctcaaaatga tctattctgt
     2941 cttttccgtt cttgtccttg tatttgtccg caggtatgcc aagacggtct ttcaagtttt
     3001 caagggatat atccaaaggg tacacctgcc cactcattaa catgtaaaac ctaagggaat
     3061 acccagtagg tagcgcaaga gccttgttta actcaaattc tctgtacccc ttggcgaact
     3121 tggtaaacac atcccaaagg tcgttagaca cacgaaaggt tataatgcca gtgcgttttt
     3181 tatattttgg gttagatata aatccgcact tccaccattc ctcgtcatct tcgtaagtaa
     3241 aaaaacgtcc tgccaaagaa tcgagtgcgg ctatgatttc attgtaatca cgtccggaaa
     3301 aaataacgtc agatacatgc atttgtgcat caacatccca aagtccatgc tcaaacttgc
     3361 gtttcgtgcc tgcataatct ttcagtttta ctccctttag ttcagcttgg cacgcttcca
     3421 gtatgcgaag aactattctt tgttcgtgta tggacatgtc ttgctgtttt gaccatgtat
     3481 atacccatga aacaacaaca tctttattct tggtaatagg tagtttcttt ttcataaacg
     3541 attgatttgc tgcaaatata cacaatcccc acattaaaac aaaaaaagag gggtaaaact
     3601 cccaaagtgt ggggactaat ttacttttaa actcccaaag tgtggggact aaactcccaa
     3661 agtgtgggga aacacatgtt ctaatccctt tatttatggg cgtttgcgaa gaagtgatag
     3721 agcatattac agacgatgct tataacagac aaggggaatt tatagagcta agtggttgat
     3781 ttactgtcgg aaaaagaaaa acgataggga aaaagagcaa agcaaaacca accaacgggc
     3841 ggtaggattg gaaacgggtt tttatggcgt gtacacgttt gtgtacaaaa tgtttgtatt
     3901 ttattgaaat atagctatct ttgtgctgaa tttaaaagca aacagatatg gaagcattat
     3961 cagtaagaga ataccgtaac aacctcgcag cgtctttcac caaagctgac aatggcgagc
     4021 aggtactaat tcgcaggaaa aacgagattt acgctttggt aaaagttggt cgtgaagatt
     4081 tgatgataac cccggagctg caagcaagga ttgacaaggc aagggaagaa atcaaatccg
     4141 gaaagtgtgt taccctcaaa agcagtgagg atattgacgc ttatttcgat agtct
//
