LOCUS       NZ_CP103196             4130 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Bacteroides ovatus strain BFG-261 plasmid unnamed1, complete
            sequence.
ACCESSION   NZ_CP103196
VERSION     NZ_CP103196.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30323245
            Assembly: GCF_024759765.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides ovatus
  ORGANISM  Bacteroides ovatus
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4130)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4130)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 123x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 09:04:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,297
            CDSs (total)                      :: 5,197
            Genes (coding)                    :: 4,932
            CDSs (with protein)               :: 4,932
            Genes (RNA)                       :: 100
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 265
            CDSs (without protein)            :: 265
            Pseudo Genes (ambiguous residues) :: 0 of 265
            Pseudo Genes (frameshifted)       :: 208 of 265
            Pseudo Genes (incomplete)         :: 52 of 265
            Pseudo Genes (internal stop)      :: 17 of 265
            Pseudo Genes (multiple problems)  :: 10 of 265
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103196.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4130
                     /organism="Bacteroides ovatus"
                     /mol_type="genomic DNA"
                     /strain="BFG-261"
                     /host="Homo sapiens"
                     /db_xref="taxon:28116"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
     gene            join(3835..4130,1..4)
                     /gene="mbpA"
                     /locus_tag="NXV29_RS26655"
     CDS             join(3835..4130,1..4)
                     /gene="mbpA"
                     /locus_tag="NXV29_RS26655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpA"
                     /protein_id="WP_004327437.1"
                     /translation="MELRRNEKITFRCTELEKDALAEQAARCSLSVSEYCRSLSLGGRP
                     RERYTEEERQLLRDIAQLKGTLQRLNNYFGGRQYREVFEENRALITELKKILSR"
                     /name="mbpA"
     gene            1..795
                     /gene="mbpB"
                     /locus_tag="NXV29_RS26520"
                     /old_locus_tag="NXV29_26520"
     CDS             1..795
                     /gene="mbpB"
                     /locus_tag="NXV29_RS26520"
                     /old_locus_tag="NXV29_26520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpB"
                     /protein_id="WP_007560590.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="mbpB"
     gene            752..1204
                     /gene="mbpC"
                     /locus_tag="NXV29_RS26525"
                     /old_locus_tag="NXV29_26525"
     CDS             752..1204
                     /gene="mbpC"
                     /locus_tag="NXV29_RS26525"
                     /old_locus_tag="NXV29_26525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpC"
                     /protein_id="WP_004295511.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="mbpC"
     gene            1224..1454
                     /locus_tag="NXV29_RS26530"
                     /old_locus_tag="NXV29_26530"
     CDS             1224..1454
                     /locus_tag="NXV29_RS26530"
                     /old_locus_tag="NXV29_26530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295510.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="hypothetical protein"
     gene            complement(1491..2516)
                     /locus_tag="NXV29_RS26535"
                     /old_locus_tag="NXV29_26535"
     CDS             complement(1491..2516)
                     /locus_tag="NXV29_RS26535"
                     /old_locus_tag="NXV29_26535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_008657007.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKHTGIITFRVSNDLWGVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLDNLKERLGIPADKYKDKNGKDRIDNFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKDLQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
     gene            2922..3173
                     /locus_tag="NXV29_RS26540"
                     /old_locus_tag="NXV29_26540"
     CDS             2922..3173
                     /locus_tag="NXV29_RS26540"
                     /old_locus_tag="NXV29_26540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295507.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
     gene            3170..3445
                     /locus_tag="NXV29_RS26545"
                     /old_locus_tag="NXV29_26545"
     CDS             3170..3445
                     /locus_tag="NXV29_RS26545"
                     /old_locus_tag="NXV29_26545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /GO_function="GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="WP_004327436.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            3456..3653
                     /locus_tag="NXV29_RS26550"
                     /old_locus_tag="NXV29_26550"
     CDS             3456..3653
                     /locus_tag="NXV29_RS26550"
                     /old_locus_tag="NXV29_26550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_007209655.1"
                     /translation="MVEYCVYWLENGEPMHEVFSNLAAAEMYSCAIRGKENVEWVEVSE
                     EEAIDLDELKDMFPDDFCGV"
                     /name="hypothetical protein"
ORIGIN
        1 atgataggga aagggaaaag catatcacat ggtgtggcgg cattggagta cgacctcgcc
       61 aaagagataa acgggcaggc agtagccacc gagatagccc ggcatgaact ttatgggtgt
      121 actggtgcgg aaatggtgca ggaaatgaaa ccgtatcaca ttgattttcc gaacgtaaaa
      181 aacaactgcc tacgtttcga ggtcagcccc tcgatagagg aaagcgccac ctttacggat
      241 gcggactggg cggaacttgg taacgacttc atgcagcgca tggggttggc gaaccaccag
      301 tacatcatca tccggcacag cggtacggag agcaagaaag agcaagccca cctgcacata
      361 ctggcaaacc gggtttccct ttccggggaa ctgtaccggg acaactggat agggaaaaag
      421 gcaacggaag ccgccaatgc catagccaag gaacggaact ttgtacagtc gcaggacatt
      481 ggcaaagtca acaaagcgga aatcaaggaa gccatggacg gcgtattgaa gaagatgcag
      541 ggctttgact ttaccaaatt caaggaagaa cttggtaaga gaggttttaa agtccgggaa
      601 gccagggcaa gcaccgggaa acttaacggc tactatgtca cagcccgaag cggtacggag
      661 tataaggcaa gcgagatagg gaaaggctac actctcgccc atatcgagcg gacacaaagc
      721 aaactgaagt gcaactcaat gaacatatct catggaaaca aactcacacc cggaagcggc
      781 agcttccaac gttaagcagg gacagtacag cccccggaaa agaaaagata caacgccaag
      841 ggtaaacccg cagcttgcgg tagaactggt gtatcaagaa ctaaagcgtg ttgaagtcta
      901 tacgaagcgc atagaggacg caacagcccg aaaggtacaa atagacggga aaagccttga
      961 aagtgccgaa aatcgcctaa aaaacgtgtt ggcggacttt gaacggcagg ggtacagaat
     1021 gaaaaacggc ggttatgtgg acaaacgaat ttcgttctac tcaatccttt gtgctgttat
     1081 ctccctattg ttcgcttgtt tcatgtgcta tctttggacg gatgcagcca aagaccggga
     1141 caactacaag cagtattatg aatactacca agagcaggca agggaacaaa aggggaataa
     1201 ataaacatct aactttacga attatgggaa caacggaaca cgaagaaccc cggttcttct
     1261 tcatactgaa caagggtgcg aagtccggcg gcgaaatcac ccatgccgtc ctaaacggta
     1321 gtatcgtttc gaagccggca ggctgggacg cctttcatgg gcttgcactg gcgagagaga
     1381 aactaagcag cgaggaaata caacagcaga tgaaagaact tggtgtagaa atggaaatcg
     1441 ttcctctgat ttgacaagat tacccggagt gtttcagccg ggtaatcttg ttacttatcc
     1501 ttgattttcc ctttaagggc gtttataatc caccctttcg gattgttctt ttctcgtgat
     1561 tttccgttta ggagagccag ttctccgata aggtcggtta tcttttcttg tgccgttatg
     1621 aatgtctctt tgttccggtt tatctcttcc gatgtgaaac cgcaggaata acggagatac
     1681 tcgtatacat ggctgtctat ctgatatcgt gctgtaacct ttgcctgcaa atctttccct
     1741 tccagttctt catccctgaa ctgtggctga tagaccgggt aaaacctaaa cccggtcacc
     1801 ttgctacgtt tgttgtttgg gttttcacgc actttcacgt agttgaaagt gtatgggcaa
     1861 ctctcatcaa gcgcagcctt tgctggtttt aatactcttt cctcgaagtt gtcgattctg
     1921 tcttttccgt ttttgtcttt gtatttgtcc gcaggtatgc caagtcgttc ttttaagttg
     1981 tccagtgata tatccaaagg gtacacctgc ccactcatga gcatataaaa cctaagcgaa
     2041 tagcccgtag gcagcgcaag agccttgttt agttcaaact ccctatatcc ttttgcgaat
     2101 ttggtaaaca cgccccaaag gtcattagat acacgaaatg ttataatacc ggtatgcttt
     2161 ttgtatttcg ggttagatat aaatccacat ttccaccatt cctcatcatc ttcgtaagtg
     2221 aaaaaacgtc cagccagtga atcgagtgca gctatgattt cgttgtagtc acgtccggaa
     2281 aaaataacgt cagatacatg catttgtgca tcaacatccc aaagtccatg ctcaaatttg
     2341 cgtttcgtgc ctgcataatc tttcagcttt actcccttta gttcagcctg gcacgcttcc
     2401 agtatgcgaa gaactattct ttgttcgtgt atggacatgt cttgctgttt ggaccatgta
     2461 tatacccatg atacaactac gtctttattt ttggtaatag gtagcttctt tttcataact
     2521 atttgatttg ttgcaaagat atgaaatacc tacatataaa caaaaaaaga agggtaaaac
     2581 tcccaaagtg tagggaaagt gcgtcttaaa aactcccaaa gtgtaggatt aaaactccca
     2641 aaatgtaggg aagcacatgc tttaatccct ttgtttatcg gtgttttcgt aaaagtgata
     2701 gagcatatta cagacgatgt ttataacaga caaggaaaat ttatagggct aagcggttga
     2761 tttactgtcg gaaaaagaaa aacgataggg aaaaagcaaa accaaccaac gggcggtagg
     2821 attgggaacg gttttttatg gcgtgtacac aaatgtgtac aaaagatttg tattttactg
     2881 aaatatagct atctttgtgc tgaatttaaa agcaaacaga tatggaagca ttatcagtaa
     2941 gagaataccg taacaacctc gcagcgtctt tcaccaaagc agacaatggc gagcaggtat
     3001 taattcgtcg gaaaaacgaa atttacgctt tggtgaaagt aggtcgtgag gatttgatga
     3061 taaccccgga gctgcaagca aggattgaca aggcaaggga agaaatcaaa tccggaaagt
     3121 gtgttaccct caaaagcagt gaggatattg acgcttattt cgatagtcta tgatgtacac
     3181 aattagggtt tccgacgggg tggataaggt gattgccaaa tggaagaaat caaaccccaa
     3241 tttgttcaag aagtataaga aaatctacaa agaattgtta gagcacccta agactgggct
     3301 tgggcatccc gaagcgttaa gaggcggtgg ggatattaca tggtctcgac acatcaccgc
     3361 ccatgaccgg ataatctatg acatttacga ggaagtagta gaagtctata ttttggaggt
     3421 agaggggcat tacaacgata aatgataaaa ctgttatggt cgaatattgt gtttactggt
     3481 tagagaacgg cgagcctatg cacgaggtgt tctctaacct tgccgccgcc gagatgtact
     3541 catgtgcgat aagagggaaa gaaaacgttg aatgggtgga ggtgtccgaa gaagaagcca
     3601 ttgatttgga cgaactgaaa gacatgttcc cggatgactt ctgcggcgtg taatcccctt
     3661 gggtagaaat tgttcggctg tgggggattt tctaacatgc ctgggctttt tgccgggcgg
     3721 ttggtgtgga tgtattccca tgcggcatgt gtatatatag caagaagtgt ccttgtcgga
     3781 caattcttgc ttttctcgct ttgctcaaaa agattttaag attacctttg tggcatggaa
     3841 ctaagacgga acgaaaagat tacattccga tgtaccgaac ttgaaaagga cgcacttgcg
     3901 gagcaggcag cccggtgcag tctaagcgta tcggaatact gccggagttt gtcccttggg
     3961 gggcgcccaa gggagaggta caccgaggag gaacggcagc ttctccggga catagcccag
     4021 ttgaaaggaa cgctccaacg gctgaacaac tacttcggtg gtcgccagta ccgggaagtg
     4081 ttcgaggaga accgggcact aattacagag ctcaaaaaaa tactctcacg
//
