LOCUS       NZ_CP103192             4091 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Bacteroides ovatus strain BFG-224 plasmid unnamed1, complete
            sequence.
ACCESSION   NZ_CP103192
VERSION     NZ_CP103192.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30323233
            Assembly: GCF_024759785.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides ovatus
  ORGANISM  Bacteroides ovatus
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4091)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4091)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 264x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 06:17:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,224
            CDSs (total)                      :: 5,129
            Genes (coding)                    :: 4,829
            CDSs (with protein)               :: 4,829
            Genes (RNA)                       :: 95
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 300
            CDSs (without protein)            :: 300
            Pseudo Genes (ambiguous residues) :: 0 of 300
            Pseudo Genes (frameshifted)       :: 245 of 300
            Pseudo Genes (incomplete)         :: 39 of 300
            Pseudo Genes (internal stop)      :: 31 of 300
            Pseudo Genes (multiple problems)  :: 13 of 300
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103192.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4091
                     /organism="Bacteroides ovatus"
                     /mol_type="genomic DNA"
                     /strain="BFG-224"
                     /host="Homo sapiens"
                     /db_xref="taxon:28116"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="1986-07-11"
     gene            1..198
                     /locus_tag="NXV93_RS26135"
                     /old_locus_tag="NXV93_26135"
     CDS             1..198
                     /locus_tag="NXV93_RS26135"
                     /old_locus_tag="NXV93_26135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295503.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            391..690
                     /gene="mbpA"
                     /locus_tag="NXV93_RS26235"
     CDS             391..690
                     /gene="mbpA"
                     /locus_tag="NXV93_RS26235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpA"
                     /protein_id="WP_004327437.1"
                     /translation="MELRRNEKITFRCTELEKDALAEQAARCSLSVSEYCRSLSLGGRP
                     RERYTEEERQLLRDIAQLKGTLQRLNNYFGGRQYREVFEENRALITELKKILSR"
                     /name="mbpA"
     gene            687..1481
                     /gene="mbpB"
                     /locus_tag="NXV93_RS26140"
                     /old_locus_tag="NXV93_26140"
     CDS             687..1481
                     /gene="mbpB"
                     /locus_tag="NXV93_RS26140"
                     /old_locus_tag="NXV93_26140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpB"
                     /protein_id="WP_007560590.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="mbpB"
     gene            1438..1890
                     /gene="mbpC"
                     /locus_tag="NXV93_RS26145"
                     /old_locus_tag="NXV93_26145"
     CDS             1438..1890
                     /gene="mbpC"
                     /locus_tag="NXV93_RS26145"
                     /old_locus_tag="NXV93_26145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpC"
                     /protein_id="WP_004295511.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="mbpC"
     gene            1910..2188
                     /locus_tag="NXV93_RS26150"
                     /old_locus_tag="NXV93_26150"
     CDS             1910..2188
                     /locus_tag="NXV93_RS26150"
                     /old_locus_tag="NXV93_26150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="charged multivesicular body protein 2b-B"
                     /protein_id="WP_258895719.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIILDFPFKGVYNPPFRIVLFS"
                     /name="charged multivesicular body protein 2b-B"
     gene            complement(2069..3145)
                     /locus_tag="NXV93_RS26155"
                     /old_locus_tag="NXV93_26155"
     CDS             complement(2069..3145)
                     /locus_tag="NXV93_RS26155"
                     /old_locus_tag="NXV93_26155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_258895718.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     DFHFYTKFFHLLLYFLAA"
                     /name="replication initiation protein"
     gene            3558..3809
                     /locus_tag="NXV93_RS26160"
                     /old_locus_tag="NXV93_26160"
     CDS             3558..3809
                     /locus_tag="NXV93_RS26160"
                     /old_locus_tag="NXV93_26160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295507.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
     gene            3806..4081
                     /locus_tag="NXV93_RS26165"
                     /old_locus_tag="NXV93_26165"
     CDS             3806..4081
                     /locus_tag="NXV93_RS26165"
                     /old_locus_tag="NXV93_26165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /GO_function="GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="WP_004327436.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
ORIGIN
        1 atggtcgaat attgtgttta ctggttagag aacggcgagc ctatgcacga ggtgttctct
       61 tctcttgccg ccgccgagat gtactcatgt gcgataagag ggaaagaaaa cattgaatgg
      121 gtggaggtgt ccgaagaaga aaccattgat ttggacgaac tggaagacat gttcccggat
      181 gacttctgcg gcgtgtaatc cccttgggta gaaatggggt agaatttgtt aggctgtggg
      241 ggattttcta acacgccggg gctttttgct gggcggttgg cgtggatgta ttcccatgcg
      301 gcatgtgtat atatagcaag aagtgtcctt gtcggacaat tcttgctttt ctcgctttgc
      361 tcaaaaagat tttaagatta cctttgtggc atggaactaa gacggaacga aaagattaca
      421 ttccggtgta ccgaacttga aaaggacgca cttgcggagc aggcagcccg gtgcagtcta
      481 agcgtatcgg aatactgccg gagtttgtcc cttggggggc gcccaaggga gaggtacacc
      541 gaggaggaac ggcagcttct ccgggacata gcccagttga aaggaacgct ccaacggctg
      601 aacaactact tcggtggtcg ccagtaccgg gaagtgttcg aggagaaccg ggcactaatt
      661 acagagctca aaaaaatact ctcacgatga tagggaaagg gaaaagcata tcacatggtg
      721 tggcggcatt ggagtacgac ctcgccaaag agataaacgg gcaggcagta gccaccgaga
      781 tagcccggca tgaactttat gggtgtactg gtgcggaaat ggtgcaggaa atgaaaccgt
      841 atcacattga ttttccgaac gtaaaaaaca actgcctacg tttcgaggtc agcccctcga
      901 tagaggaaag cgccaccttt acggatgcgg actgggcgga acttggtaac gacttcatgc
      961 agcgcatggg gttggcgaac caccagtaca tcatcatccg gcacagcggt acggagagca
     1021 agaaagagca agcccacctg cacatactgg caaaccgggt ttccctttcc ggggaactgt
     1081 accgggacaa ctggataggg aaaaaggcaa cggaagccgc caatgccata gccaaggaac
     1141 ggaactttgt acagtcgcag gacattggca aagtcaacaa agcggaaatc aaggaagcca
     1201 tggacggcgt attgaagaag atgcagggct ttgactttac caaattcaag gaagaacttg
     1261 gtaagagagg ttttaaagtc cgggaagcca gggcaagcac cgggaaactt aacggctact
     1321 atgtcacagc ccgaagcggt acggagtata aggcaagcga gatagggaaa ggctacactc
     1381 tcgcccatat cgagcggaca caaagcaaac tgaagtgcaa ctcaatgaac atatctcatg
     1441 gaaacaaact cacacccgga agcggcagct tccaacgtta agcagggaca gtacagcccc
     1501 cggaaaagaa aagatacaac gccaagggta aacccgcagc ttgcggtaga actggtgtat
     1561 caagaactaa agcgtgttga agtctatacg aagcgcatag aggacgcaac agcccgaaag
     1621 gtacaaatag acgggaaaag ccttgaaagt gccgaaaatc gcctaaaaaa cgtgttggcg
     1681 gactttgaac ggcaggggta cagaatgaaa aacggcggtt atgtggacaa acgaatttcg
     1741 ttctactcaa tcctttgtgc tgttatctcc ctattgttcg cttgtttcat gtgctatctt
     1801 tggacggatg cagccaaaga ccgggacaac tacaagcagt attatgaata ctaccaagag
     1861 caggcaaggg aacaaaaggg gaataaataa acatctaact ttacgaatta tgggaacaac
     1921 ggaacacgaa gaaccccggt tcttcttcat actgaacaag ggtgcgaagt ccggcggcga
     1981 aatcacccat gccgtcctaa acggtagtat cgtttcgaag ccggcaggct gggacgcctt
     2041 tcatgggctt gcactggcga gagagaaact aagcagcgag gaaatacaac agcagatgaa
     2101 agaacttggt gtagaaatgg aaatcatcct tgattttccc tttaagggcg tttataatcc
     2161 accctttcgg attgttcttt tctcgtgatt ttccgtttag gagagccagt tctccgataa
     2221 ggtcggttat cttttcttgt gccgttatga atgtctcttt gttccggttt atctcttccg
     2281 atgtgaagcc gcaggaataa cggaggtact cgtacacatg gctgtctatc tgatatcgtg
     2341 ctgtaacctt tgcttgcaat tctttccctt ccagttcttc atctctgaac tgtggttgat
     2401 agaccgggta gaacctaaac ccggtcacct tgctacgttt gttgtttggg ttttcacgca
     2461 ctttcacgta gttgaaagtg tatgggcagc tctcatcaag cgcagccttt gctggtttca
     2521 aaactctttc ctcaaaatga tctattctgt cttttccgtt cttgtccttg tatttgtccg
     2581 caggtatgcc aagacggtct ttcaagtttt caagggatat atccaaaggg tacacctgcc
     2641 cactcattaa catgtaaaac ctaagggaat acccagtagg tagcgcaaga gccttgttta
     2701 actcaaattc tctgtacccc ttggcgaact tggtaaacac atcccaaagg tcgttagaca
     2761 cacgaaaggt tataatgcca gtgcgttttt tatattttgg gttagatata aatccgcact
     2821 tccaccattc ctcgtcatct tcgtaagtaa aaaaacgtcc tgccaaagaa tcgagtgcgg
     2881 ctatgatttc attgtaatca cgtccggaaa aaataacgtc agatacatgc atttgtgcat
     2941 caacatccca aagtccatgc tcaaacttgc gtttcgtgcc tgcataatct ttcagtttta
     3001 ctccctttag ttcagcttgg cacgcttcca gtatgcgaag aactattctt tgttcgtgta
     3061 tggacatgtc ttgctgtttt gaccatgtat atacccatga aacaacaaca tctttattct
     3121 tggtaatagg tagtttcttt ttcataaacg attgatttgc tgcaaatata cacaatcccc
     3181 acattaaaac aaaaaaagag gggtaaaact cccaaagtgt ggggactaat ttacttttaa
     3241 actcccaaag tgtggggact aaactcccaa agtgtgggga aacacatgtt ctaatccctt
     3301 tatttatggg cgtttgcgaa gaagtgatag agcatattac agacgatgct tataacagac
     3361 aaggggaatt tatagagcta agtggttgat ttactgtcgg aaaaagaaaa acgataggga
     3421 aaaagagcaa agcaaaacca accaacgggc ggtaggattg gaaacgggtt tttatggcgt
     3481 gtacacgttt gtgtacaaaa tgtttgtatt ttattgaaat atagctatct ttgtgctgaa
     3541 tttaaaagca aacagatatg gaagcattat cagtaagaga ataccgtaac aacctcgcag
     3601 cgtctttcac caaagctgac aatggcgagc aggtactaat tcgcaggaaa aacgagattt
     3661 acgctttggt aaaagttggt cgtgaagatt tgatgataac cccggagctg caagcaagga
     3721 ttgacaaggc aagggaagaa atcaaatccg gaaagtgtgt taccctcaaa agcagtgagg
     3781 atattgacgc ttatttcgat agtctatgat gtacacaatt agggtttccg acggggtgga
     3841 taaggtgatt gccaaatgga agaaatcaaa ccccaatttg ttcaagaagt ataagaaaat
     3901 ctacaaagaa ttgttagagc accctaagac tgggcttggg catcccgaag cgttaagggg
     3961 cggtggggat attacatggt ctcgacacat taccgcccat gaccggataa tctatgacat
     4021 ttacgaggaa gtggtagagg tctacatctt ggaggtagag gggcattaca acgataaatg
     4081 ataaaactgt t
//
