LOCUS       NZ_CP103187             2707 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Parabacteroides distasonis strain BFG-150 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP103187
VERSION     NZ_CP103187.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30323196
            Assembly: GCF_024759625.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1  (bases 1 to 2707)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2707)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 195x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 06:33:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,958
            CDSs (total)                      :: 3,854
            Genes (coding)                    :: 3,634
            CDSs (with protein)               :: 3,634
            Genes (RNA)                       :: 104
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 220
            CDSs (without protein)            :: 220
            Pseudo Genes (ambiguous residues) :: 0 of 220
            Pseudo Genes (frameshifted)       :: 184 of 220
            Pseudo Genes (incomplete)         :: 39 of 220
            Pseudo Genes (internal stop)      :: 15 of 220
            Pseudo Genes (multiple problems)  :: 15 of 220
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103187.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2707
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="BFG-150"
                     /host="Homo sapiens"
                     /db_xref="taxon:823"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="1985-10-21"
     gene            1..1104
                     /locus_tag="NXX93_RS19785"
                     /old_locus_tag="NXX93_19785"
     CDS             1..1104
                     /locus_tag="NXX93_RS19785"
                     /old_locus_tag="NXX93_19785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_007219893.1"
                     /translation="MGATSIHVQAVKPGSEIHNFREKELDYVRPELSHLNESWVGDSIS
                     HRLESAKQRYLDTVGQKMQAKAAPIREGVIVIKQETTMQELQQFATVCKERFGIEAFQI
                     HIHKDEGYMNAKQWTPNLHAHVVFDWTQPNGKSVRLSRDDMAELQTIASETLGMERGVS
                     SDRKHLSAMQYKTECAKEQLQELSNDISSALDKHKDVQNQLLQLQKELRSIETKKNVQK
                     LISKASEKFYGLIGKTVNDREKDALKAKVKALEGENEQLSDRLGKAILEKEQNGTKAFK
                     AENDKEYYRQQMDNARTTSNRLRTENQELKTETKELKKELGKMKDLFNSEQLEALRHHF
                     PNISKAMEEGKDLLKQITRSRGFGMGM"
                     /name="plasmid recombination protein"
     gene            1501..2091
                     /locus_tag="NXX93_RS19790"
                     /old_locus_tag="NXX93_19790"
     CDS             1501..2091
                     /locus_tag="NXX93_RS19790"
                     /old_locus_tag="NXX93_19790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295513.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_004295513.1"
                     /translation="MENKKAVKLTDFQKNEENPFMKQAIEGIENHVVKKYKSNSGGDKR
                     AVVALADTETGEVFKTSFIRQIEVDEEQFTKLYLSNFAAFFDLSQAAIRVFGYFMTCMK
                     PKNDLIIFNRKKCLEYTKYKTDKAVYKGLAELVKAEIIARGPADNLWFINPLIVFNGDR
                     VTFAKTYVRKKTLAAQKKEEAEKRQLSLGFDEQ"
                     /name="replication/maintenance protein RepL"
     Typing          1469..2081
                     /name="rep_cluster_1868"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.701"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2..1101
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.275"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgggagcaa caagtattca tgtacaagca gtgaagccgg ggagtgagat tcacaacttt
       61 agggaaaaag agttggacta tgttcgtccc gaacttagtc atttgaatga aagctgggtt
      121 ggagatagca tctcccatcg gctggaaagt gcgaaacaaa gatatctcga tacggttggg
      181 cagaagatgc aggctaaagc cgcacccata cgagagggag taatagtaat caaacaagaa
      241 accaccatgc aggaactcca gcagtttgcc acggtctgca aagaacgttt cggtatcgaa
      301 gcatttcaaa tccatataca caaggacgaa ggatacatga acgcaaagca atggacacct
      361 aaccttcatg cccatgtagt tttcgattgg acgcagccga atgggaaaag tgtgcgttta
      421 tcgcgtgatg acatggcaga actccaaacc atagcatctg aaacactggg catggaacgt
      481 ggcgtttctt ctgaccgcaa acacttatcg gctatgcagt acaagaccga atgtgcgaaa
      541 gaacagcttc aggaactatc aaacgatata tccagtgcat tagacaaaca caaggacgta
      601 caaaaccagc ttcttcagct tcagaaagaa ctacgttcca ttgaaacaaa gaagaacgtc
      661 caaaaactca tttctaaggc ttcagagaag ttttacggct tgattggaaa aacagtcaac
      721 gatagggaaa aggatgcctt aaaagccaaa gtaaaggctt tagaggggga aaatgaacag
      781 ctatccgata gactgggaaa ggctatactt gaaaaagagc aaaacggcac aaaggcattc
      841 aaagccgaga atgacaagga gtattataga caacaaatgg acaacgcaag gacaaccagt
      901 aaccgattaa ggacggagaa ccaagaacta aagaccgaaa ccaaggaatt gaaaaaagaa
      961 cttggtaaga tgaaagactt gttcaattcc gaacaactgg aggctttaag gcatcatttc
     1021 ccaaacatat caaaagctat ggaagagggg aaagacctac tcaagcaaat caccagaagc
     1081 agaggtttcg gtatgggtat gtaacccccc ccgcccccaa agggggagcg accaaacggc
     1141 agcctctctc aatggagtgt tacgtcgttc ggattcggaa gaaattttgc agggttcgga
     1201 aaacggttgt gtgcttattc taaaaaaagt ttatggtgtg gcgctcgtcg ggacgggtgg
     1261 tcccgcccct tgccgctggg cgctccccga ccgatgattt ttaagtgact gattttgtgc
     1321 tgttttgggg gtatattaag aatagaagaa atagaataag ttaagtactt gatacacaat
     1381 atagggcatt ttccatattg gaaattctca tacaggaaaa taatatttcc cttaatattg
     1441 tttttatgga aaataatagt ttactttgtg gagaataata tttcccaaaa acacatcaaa
     1501 atggaaaata aaaaagcagt taagttaacc gattttcaaa agaacgaaga aaatcctttt
     1561 atgaaacaag ctatagaagg tattgaaaat catgttgtta aaaagtataa gagtaatagt
     1621 ggtggcgata agagagccgt agtagcttta gccgacactg aaactggaga agtgtttaag
     1681 acttcgttta tccgtcaaat agaagtagat gaagaacaat tcactaaatt gtatctttct
     1741 aactttgctg cattctttga cctatcacaa gcagctattc gggtttttgg ttactttatg
     1801 acctgcatga aacccaaaaa tgatttaatc atcttcaata gaaaaaaatg cctagaatat
     1861 accaaataca aaacagacaa agccgtttat aaaggacttg cagaacttgt aaaagctgaa
     1921 atcatagccc gaggaccagc cgataatctt tggtttatta atcctctgat agtattcaat
     1981 ggtgaccgag tgacatttgc taaaacatac gttcggaaaa agactttagc tgcccaaaag
     2041 aaagaagaag cagagaaacg acaattatca cttggctttg atgaacagta acactccatt
     2101 gagtgaagct gccgtttggt cgctccccct ttgggggggg gggggataga taaagttcct
     2161 ctatgtaaag ttataatggg ggatgaaagg caaggttcgc taaccttacc ccgattgttt
     2221 atgcttccca gcattcaatc tatccccgtt tatgggtttc tctttcaccc tacaaagata
     2281 acctcatggg ggaaaaatgt ccaagaatat ggggtaaaaa ctatcaagtc ggtagaaaat
     2341 aagtatcttt gaagtacatt tttagtagag gtactggtat gcctagacga agcagatagg
     2401 caaaaataaa gccgctggag atgtcggatg tccgtcaatt aactccagcg gcttgtattt
     2461 tggtaactct cccgtatcgg tcggctaccg tttggtcagc aacaaaggta gtactttatt
     2521 gtcgcaaatc caaatgtttt cccctttatt tgtgcattta cagaacattt gctaacttcg
     2581 cacctatgca gtatggtgat agcacactag caccctaaag ggtgcgtgtg taaggggaca
     2641 agccccctta accccctgtc agccggctgt caccggctgt tatcgattgt cacaaaaatg
     2701 ttaactt
//
