LOCUS       NZ_CP103179             4172 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Parabacteroides distasonis strain BFG-158 plasmid unnamed1, complete
            sequence.
ACCESSION   NZ_CP103179
VERSION     NZ_CP103179.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30323199
            Assembly: GCF_024759645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1  (bases 1 to 4172)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4172)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 236x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 06:06:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,341
            CDSs (total)                      :: 4,238
            Genes (coding)                    :: 4,135
            CDSs (with protein)               :: 4,135
            Genes (RNA)                       :: 103
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 55 of 103
            Pseudo Genes (incomplete)         :: 57 of 103
            Pseudo Genes (internal stop)      :: 7 of 103
            Pseudo Genes (multiple problems)  :: 15 of 103
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103179.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4172
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="BFG-158"
                     /host="Homo sapiens"
                     /db_xref="taxon:823"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="1985-10-28"
     gene            1..1026
                     /locus_tag="NXY22_RS21685"
                     /old_locus_tag="NXY22_21685"
     CDS             1..1026
                     /locus_tag="NXY22_RS21685"
                     /old_locus_tag="NXY22_21685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_004295509.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKRTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLENLKDRLGIPADKYKDKNGKDRIDHFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
     gene            complement(1063..1293)
                     /locus_tag="NXY22_RS21690"
                     /old_locus_tag="NXY22_21690"
     CDS             complement(1063..1293)
                     /locus_tag="NXY22_RS21690"
                     /old_locus_tag="NXY22_21690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295510.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAREKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="hypothetical protein"
     gene            complement(1313..1765)
                     /gene="mbpC"
                     /locus_tag="NXY22_RS21695"
                     /old_locus_tag="NXY22_21695"
     CDS             complement(1313..1765)
                     /gene="mbpC"
                     /locus_tag="NXY22_RS21695"
                     /old_locus_tag="NXY22_21695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpC"
                     /protein_id="WP_004295511.1"
                     /translation="METNSHPEAAASNVKQGQYSPRKRKDTTPRVNPQLAVELVYQELK
                     RVEVYTKRIEDATARKVQIDGKSLESAENRLKNVLADFERQGYRMKNGGYVDKRISFYS
                     ILCAVISLLFACFMCYLWTDAAKDRDNYKQYYEYYQEQAREQKGNK"
                     /name="mbpC"
     gene            complement(1722..2516)
                     /gene="mbpB"
                     /locus_tag="NXY22_RS21700"
                     /old_locus_tag="NXY22_21700"
     CDS             complement(1722..2516)
                     /gene="mbpB"
                     /locus_tag="NXY22_RS21700"
                     /old_locus_tag="NXY22_21700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpB"
                     /protein_id="WP_007560590.1"
                     /translation="MIGKGKSISHGVAALEYDLAKEINGQAVATEIARHELYGCTGAEM
                     VQEMKPYHIDFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKV
                     NKAEIKEAMDGVLKKMQGFDFTKFKEELGKRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKCNSMNISHGNKLTPGSGSFQR"
                     /name="mbpB"
     gene            complement(2513..2836)
                     /gene="mbpA"
                     /locus_tag="NXY22_RS21705"
                     /old_locus_tag="NXY22_21705"
     CDS             complement(2513..2836)
                     /gene="mbpA"
                     /locus_tag="NXY22_RS21705"
                     /old_locus_tag="NXY22_21705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpA"
                     /protein_id="WP_258918843.1"
                     /translation="MELRRNEKITFRCTELEKDALAEQAARCSLSVSEYCRSLSLGGRP
                     RERYTEEERQLLRDIAQLKGTLQRLNNGTLQRLNNYFGGRQYREVFEENRALITELKKI
                     LSR"
                     /name="mbpA"
     gene            complement(3029..3226)
                     /locus_tag="NXY22_RS21710"
                     /old_locus_tag="NXY22_21710"
     CDS             complement(3029..3226)
                     /locus_tag="NXY22_RS21710"
                     /old_locus_tag="NXY22_21710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295503.1"
                     /translation="MVEYCVYWLENGEPMHEVFSSLAAAEMYSCAIRGKENIEWVEVSE
                     EETIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            complement(3237..3512)
                     /locus_tag="NXY22_RS21715"
                     /old_locus_tag="NXY22_21715"
     CDS             complement(3237..3512)
                     /locus_tag="NXY22_RS21715"
                     /old_locus_tag="NXY22_21715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /GO_function="GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="WP_004327436.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            complement(3509..3760)
                     /locus_tag="NXY22_RS21720"
                     /old_locus_tag="NXY22_21720"
     CDS             complement(3509..3760)
                     /locus_tag="NXY22_RS21720"
                     /old_locus_tag="NXY22_21720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295507.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
ORIGIN
        1 atgaaaaaga aactacctat taccaagaat aaagatgttg ttgtttcatg ggtatataca
       61 tggtcaaaac agcaagacat gtccatacac gaacaaagaa tagttcttcg catactggaa
      121 gcgtgccaag ctgaactaaa gggagtaaaa ctgaaagatt atgcaggcac gaaacgcaag
      181 tttgagcatg gactttggga tgttgatgca caaatgcatg tatctgacgt tattttttcc
      241 ggacgtgatt acaatgaaat catagccgca ctcgattctt tggcaggacg tttttttact
      301 tacgaagatg acgaggaatg gtggaagtgc ggatttatat ctaacccaaa atataaaaaa
      361 cgcactggca ttataacctt tcgtgtgtct aacgaccttt gggatgtgtt taccaagttc
      421 gccaaggggt acagagaatt tgagttaaac aaggctcttg cgctacctac tgggtattcc
      481 cttaggtttt acatgttaat gagtgggcag gtgtaccctt tggatatatc ccttgaaaac
      541 ttgaaagacc gtcttggcat acctgcggac aaatacaagg acaagaacgg aaaagacaga
      601 atagatcatt ttgaggaaag agttttgaaa ccagcaaagg ctgcgcttga tgagagctgc
      661 ccatacactt tcaactacgt gaaagtgcgt gaaaacccaa acaacaaacg tagcaaggtg
      721 accgggttta ggttctaccc ggtctatcaa ccacagttca gagatgaaga actggaaggg
      781 aaagaattgc aagcaaaggt tacagcacga tatcagatag acagccatgt gtacgagtac
      841 ctccgttatt cctgcggctt cacatcggaa gagataaacc ggaacaaaga gacattcata
      901 acggcacaag aaaagataac cgaccttatc ggagaactgg ctctcctaaa cggaaaatca
      961 cgagaaaaga acaatccgaa agggtggatt ataaacgccc ttaaagggaa aatcaaggat
     1021 aagtaacaag attacccggc tgaaacactc cgggtaatct tgtcaaatca gaggaacgat
     1081 ttccatttct acaccaagtt ctttcatctg ctgttgtatt tcctcgctgc ttagtttctc
     1141 tctcgccagt gcaagcccat gaaaggcgtc ccagcctgcc ggcttcgaaa cgatactacc
     1201 gtttaggacg gcatgggtga tttcgccgcc ggacttcgca cccttgttca gtatgaagaa
     1261 gaaccggggt tcttcgtgtt ccgttgttcc cataattcgt aaagttagat gtttatttat
     1321 tccccttttg ttcccttgcc tgctcttggt agtattcata atactgcttg tagttgtccc
     1381 ggtctttggc tgcatccgtc caaagatagc acatgaaaca agcgaacaat agggagataa
     1441 cagcacaaag gattgagtag aacgaaattc gtttgtccac ataaccgccg tttttcattc
     1501 tgtacccctg ccgttcaaag tccgccaaca cgttttttag gcgattttcg gcactttcaa
     1561 ggcttttccc gtctatttgt acctttcggg ctgttgcgtc ctctatgcgc ttcgtataga
     1621 cttcaacacg ctttagttct tgatacacca gttctaccgc aagctgcggg tttacccttg
     1681 gcgttgtatc ttttcttttc cgggggctgt actgtccctg cttaacgttg gaagctgccg
     1741 cttccgggtg tgagtttgtt tccatgagat atgttcattg agttgcactt cagtttgctt
     1801 tgtgtccgct cgatatgggc gagagtgtag cctttcccta tctcgcttgc cttatactcc
     1861 gtaccgcttc gggctgtgac atagtagccg ttaagtttcc cggtgcttgc cctggcttcc
     1921 cggactttaa aacctctctt accaagttct tccttgaatt tggtaaagtc aaagccctgc
     1981 atcttcttca atacgccgtc catggcttcc ttgatttccg ctttgttgac tttgccaatg
     2041 tcctgcgact gtacaaagtt ccgttccttg gctatggcat tggcggcttc cgttgccttt
     2101 ttccctatcc agttgtcccg gtacagttcc ccggaaaggg aaacccggtt tgccagtatg
     2161 tgcaggtggg cttgctcttt cttgctctcc gtaccgctgt gccggatgat gatgtactgg
     2221 tggttcgcca accccatgcg ctgcatgaag tcgttaccaa gttccgccca gtccgcatcc
     2281 gtaaaggtgg cgctttcctc tatcgagggg ctgacctcga aacgtaggca gttgtttttt
     2341 acgttcggaa aatcaatgtg atacggtttc atttcctgca ccatttccgc accagtacac
     2401 ccataaagtt catgccgggc tatctcggtg gctactgcct gcccgtttat ctctttggcg
     2461 aggtcgtact ccaatgccgc cacaccatgt gatatgcttt tccctttccc tatcatcgtg
     2521 agagtatttt tttgagctct gtaattagtg cccggttctc ctcgaacact tcccggtact
     2581 ggcgaccacc gaagtagttg ttcagccgtt ggagcgttcc gttgttcagc cgttggagcg
     2641 ttcctttcaa ctgggctatg tcccggagaa gctgccgttc ctcctcggtg tacctctccc
     2701 ttgggcgccc cccaagggac aaactccggc agtattccga tacgcttaga ctgcaccggg
     2761 ctgcctgctc cgcaagtgcg tccttttcaa gttcggtaca ccggaatgta atcttttcgt
     2821 tccgtcttag ttccatgcca caaaggtaat cttaaaatct ttttgagcaa agcgagaaaa
     2881 gcaagaattg tccgacaagg acacttcttg ctatatatac acatgccgca tgggaataca
     2941 tccacgccaa ccgcccagca aaaagccccg gcgtgttaga aaatccccca cagcctaaca
     3001 aattctaccc catttctacc caaggggatt acacgccgca gaagtcatcc gggaacatgt
     3061 cttccagttc gtccaaatca atggtttctt cttcggacac ctccacccat tcaatgtttt
     3121 ctttccctct tatcgcacat gagtacatct cggcggcggc aagagaagag aacacctcgt
     3181 gcataggctc gccgttctct aaccagtaaa cacaatattc gaccataaca gttttatcat
     3241 ttatcgttgt aatgcccctc tacctccaag atgtagacct ctaccacttc ctcgtaaatg
     3301 tcatagatta tccggtcatg ggcggtaatg tgtcgagacc atgtaatatc cccaccgccc
     3361 cttaacgctt cgggatgccc aagcccagtc ttagggtgct ctaacaattc tttgtagatt
     3421 ttcttatact tcttgaacaa attggggttt gatttcttcc atttggcaat caccttatcc
     3481 accccgtcgg aaaccctaat tgtgtacatc atagactatc gaaataagcg tcaatatcct
     3541 cactgctttt gagggtaaca cactttccgg atttgatttc ttcccttgcc ttgtcaatcc
     3601 ttgcttgcag ctccggggtt atcatcaaat cttcacgacc aacttttacc aaagcgtaaa
     3661 tctcgttttt cctgcgaatt agtacctgct cgccattgtc agctttggtg aaagacgctg
     3721 cgaggttgtt acggtattct cttactgata atgcttccat atctgtttgc ttttaaattc
     3781 agcacaaaga tagctatatt tcaataaaat acaaacattt tgtacacaaa cgtgtacacg
     3841 ccataaaaac tcgtttccaa tcctaccgcc cgttggttgg ttttgctttg ctctttttcc
     3901 ctatcgtttt tctttttccg acagtaaatc aaccacttag ctctataaat tccccttgtc
     3961 tgttataagc atcgtctgta atatgctcta tcacttcttc gcaaacgccc ataaataaag
     4021 ggattagaac atgtgtttcc ccacactttg ggagtttagt ccccacactt tgggagttta
     4081 aaagtaaatt agtccccaca ctttgggagt tttacccctc tttttttgtt ttaatgtggg
     4141 gattgtgtat atttgcagca aatcaatcgt tt
//
