LOCUS       NZ_CP103165             4360 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Parabacteroides distasonis strain BFG-426 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP103165
VERSION     NZ_CP103165.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30323342
            Assembly: GCF_024759585.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1  (bases 1 to 4360)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4360)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 430x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 06:28:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,585
            CDSs (total)                      :: 4,482
            Genes (coding)                    :: 4,227
            CDSs (with protein)               :: 4,227
            Genes (RNA)                       :: 103
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 256
            CDSs (without protein)            :: 255
            Pseudo Genes (ambiguous residues) :: 0 of 256
            Pseudo Genes (frameshifted)       :: 202 of 256
            Pseudo Genes (incomplete)         :: 58 of 256
            Pseudo Genes (internal stop)      :: 18 of 256
            Pseudo Genes (multiple problems)  :: 20 of 256
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103165.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4360
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="BFG-426"
                     /host="Homo sapiens"
                     /db_xref="taxon:823"
                     /plasmid="unnamed3"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2003-05-05"
     gene            1..252
                     /locus_tag="NXW68_RS22910"
                     /old_locus_tag="NXW68_22910"
     CDS             1..252
                     /locus_tag="NXW68_RS22910"
                     /old_locus_tag="NXW68_22910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295507.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
     gene            249..524
                     /locus_tag="NXW68_RS22915"
                     /old_locus_tag="NXW68_22915"
     CDS             249..524
                     /locus_tag="NXW68_RS22915"
                     /old_locus_tag="NXW68_22915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /GO_function="GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="WP_004327436.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            535..732
                     /locus_tag="NXW68_RS22920"
                     /old_locus_tag="NXW68_22920"
     CDS             535..732
                     /locus_tag="NXW68_RS22920"
                     /old_locus_tag="NXW68_22920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005683054.1"
                     /translation="MVEYCVYWLENGEPMHEVFSNLAAAEMYSCAIRGKENVEWVEVSE
                     EEAIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            926..1225
                     /gene="mbpA"
                     /locus_tag="NXW68_RS22925"
                     /old_locus_tag="NXW68_22925"
     CDS             926..1225
                     /gene="mbpA"
                     /locus_tag="NXW68_RS22925"
                     /old_locus_tag="NXW68_22925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpA"
                     /protein_id="WP_005683055.1"
                     /translation="MEVRRNEKITFRCTRYEKLALAEQAARCSMSTSEYCRSLSLGGRP
                     RERYTEEERQLLRDIAQLKGTLQRLNNYFGGRQYREVFEENQALITELKKILSR"
                     /name="mbpA"
     gene            1222..2016
                     /gene="mbpB"
                     /locus_tag="NXW68_RS22930"
                     /old_locus_tag="NXW68_22930"
     CDS             1222..2016
                     /gene="mbpB"
                     /locus_tag="NXW68_RS22930"
                     /old_locus_tag="NXW68_22930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpB"
                     /protein_id="WP_007755894.1"
                     /translation="MIGKGKSISHGTAALEYDLAKEIDGQTAAIEIARHELYGCTGAEM
                     VQEMKPYHADFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSQDIGKA
                     NKAEIKEAMDDVLKKMQGFDLTKFKEELGRRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKYNSMNISHGNKLTSGSGSFHR"
                     /name="mbpB"
     gene            1973..2469
                     /locus_tag="NXW68_RS22935"
                     /old_locus_tag="NXW68_22935"
                     /pseudo=""
     CDS             1973..2469
                     /locus_tag="NXW68_RS22935"
                     /old_locus_tag="NXW68_22935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            2488..2718
                     /locus_tag="NXW68_RS22940"
                     /old_locus_tag="NXW68_22940"
     CDS             2488..2718
                     /locus_tag="NXW68_RS22940"
                     /old_locus_tag="NXW68_22940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_007755891.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLVLAKEKLSSEEIQRQMKELGVEMEIVPLI"
                     /name="hypothetical protein"
     gene            complement(2757..3761)
                     /locus_tag="NXW68_RS22945"
                     /old_locus_tag="NXW68_22945"
     CDS             complement(2757..3761)
                     /locus_tag="NXW68_RS22945"
                     /old_locus_tag="NXW68_22945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560598.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_007755890.1"
                     /translation="MMKTKQQKNNSVTVVNKDQIQSYIMTTAKYDFSVYEKRILYRIVE
                     MAQGELQGVRFATDCKKIEHTLFDTVHITMPIASLLNGESDENYTRVKQALLSLQKKIF
                     TYEDEKEWISISIIALPKIKKRSSVVSFQIDSHIWDCCLDFSKGFRKYELATAMKFKSV
                     YSMRFYELLSGQKTKLIYPLEQLKEMFKVQDKYAKTNDFVRKVIEPAKNELDELSPYTF
                     EWSANKEGKKIVSFNFYPIFKPEHRDAELYKKELQKQTGLSWDLGRQVISYLKTSLEFS
                     DKEIKNNRDLFVTAQMELPDIMTELAILRGKSRTKTNPKGWIINALKGKIKDK"
                     /name="replication initiation protein"
     gene            complement(3712..3897)
                     /locus_tag="NXW68_RS22950"
                     /old_locus_tag="NXW68_22950"
     CDS             complement(3712..3897)
                     /locus_tag="NXW68_RS22950"
                     /old_locus_tag="NXW68_22950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_007560600.1"
                     /translation="MKKIIVHFKKEEFERVKNAISILAKFSEIYAPHIDKANSILSFRV
                     DDENETTEEQQCNSRQ"
                     /name="hypothetical protein"
     Typing          complement(2758..3761)
                     /name="rep_cluster_1019"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.701"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atggaagcat tatcagtaag agaataccgt aacaacctcg cagcgtcttt caccaaagct
       61 gacaatggcg agcaggtact aattcgcagg aaaaacgaga tttacgcttt ggtaaaagtt
      121 ggtcgtgaag atttgatgat aaccccggaa ctgcaagcaa ggattgacaa ggcaagggaa
      181 gaaatcaaat ccggaaagtg tgttaccctc aaaagcagtg aggatattga tgcttatttc
      241 gacagtctat gatgtacaca attagggttt ccgacggggt ggataaggtg attgccaaat
      301 ggaagaaatc aaaccccaat ttgttcaaga agtataagaa aatctacaaa gaattgttag
      361 agcaccctaa gactgggctt gggcatcccg aagcgttaag gggcggtggg gatattacat
      421 ggtctcgaca cattaccgcc catgaccgga taatctatga catttacgag gaagtggtag
      481 aggtctacat tttggaggta gaggggcatt acaacgataa atgataaaac tgttatggtc
      541 gaatattgtg tttactggtt agagaacggc gagcctatgc acgaggtgtt ctctaacctt
      601 gccgccgccg agatgtactc atgtgcgata agagggaaag aaaacgttga atgggtggag
      661 gtgtccgaag aagaagccat tgatttggac gaactggaag acatgttccc ggatgacttc
      721 tgcggcgtgt aatccccttg ggtagaaatg gggtagattt tgttaggctg tgggggattt
      781 tctaacacgc cggggctttt ttgccgggcg gttagtgtgg atgtattcca atgcggtatg
      841 tgtatatata gcaagaagtg tccttgtcgg acaattcttg cttttctcgc tttgctcaaa
      901 aagattttaa gattaccttt gtgacatgga agtaagacgg aacgaaaaga ttacattccg
      961 ctgtacccgg tatgaaaagc tggcacttgc ggagcaggca gcccgatgta gcatgagcac
     1021 atcggagtat tgccggagtt tgtcccttgg aggtcgccca agggaaaggt acaccgagga
     1081 ggaacggcag cttctccggg acatagccca gttgaaagga acgctccaac ggctgaacaa
     1141 ctacttcggt ggtcgccagt accgggaggt atttgaagag aatcaggcac taatcaccga
     1201 acttaaaaaa atactttcac gatgataggg aaaggaaaga gcatatcgca tggtacggct
     1261 gcactggagt atgaccttgc caaagagata gacggacaga cagcagccat cgagatagcc
     1321 cggcatgaac tttacgggtg tacgggtgcg gaaatggtac aggaaatgaa accataccac
     1381 gctgattttc cgaacgtaaa aaacaattgc ctacgtttcg aggtcagtcc ttcgatagag
     1441 gaaagcgcca cctttacgga tgcggactgg gcggaacttg gtaacgactt catgcagcgc
     1501 atggggctgg cgaaccacca gtacatcatc atccggcaca gcggtacgga gagcaaaaaa
     1561 gaacaagccc acctgcatat actggcaaac cgggtttccc tttccgggga actgtaccgg
     1621 gataactgga tagggaaaaa ggcaacggaa gccgccaacg ccatagccaa ggaacggaac
     1681 tttgtacagt cgcaggacat cggcaaagcc aacaaagcgg aaatcaagga agccatggac
     1741 gacgtattga agaagatgca gggctttgac ttgactaaat tcaaggaaga acttggtagg
     1801 agaggtttta aagttcggga agccagggca agcaccggaa aacttaacgg ctactacgtc
     1861 acagcccgaa gcggtacgga gtataaggcg agcgagatag ggaaaggcta cactctcgcc
     1921 catatcgagc ggacacaaag caaactgaaa tataactcaa tgaacatatc tcatggaaac
     1981 aaactcacat ccggaagcgg tagcttccac cgttaagcag ggacagtaca gcccccggaa
     2041 aagaaaagac acagcaccaa aggttaaccc gcagcttgcg atagaactgt tttttcaaga
     2101 aatgggacgt attgaagcct atacaaagcg catagaggat gcaacatccc gaaaggtaca
     2161 aatagacggg aaaagcctcg aaagtgccga aaatcgccta aaaaacgtat tgtcggactt
     2221 tgaacggcag gggtacagaa tgaaaaacgg cggttatgtg gacaaacgga tttcgttcta
     2281 ctcaatcctt tgtgctgtta tctggacaaa cggatttcgt tctactcaat cctttgtgct
     2341 gttatctccc tattgttcgc ttgtttcatg tgctatcttt ggacggatgc agccaaagac
     2401 cgggacaact acaagcagta ttatgaatac ttccaagagc aggcaaggga acaaaaggga
     2461 aacaaataaa ctctaacttt acgaattatg ggaacaacgg aacacgaaga accccggttc
     2521 ttcttcatac tgaacaaggg tgcgaagtcc ggcggcgaaa tcacccatgc tgtcctaaac
     2581 ggtagtatcg tttcgaagcc ggcaggctgg gacgcctttc atgggcttgt actggcgaaa
     2641 gagaaactaa gcagcgagga aatacagcgg cagatgaaag agcttggtgt agaaatggaa
     2701 atcgttcctc tgatttgaca agattacccc ggctgaaata taccggggta atcttgtcac
     2761 ttatccttga ttttcccttt aagggcgttt ataatccacc cttttggatt tgtttttgtc
     2821 cttgattttc ctctaagtat ggcgagttct gtcatgatgt ctggaagttc catttgtgct
     2881 gttacaaata aatcccggtt gtttttgatt tctttatcgg agaactccaa agatgttttt
     2941 aagtaactta tcacttgcct acctaaatcc catgaaagcc cggtttgctt ttgtagctct
     3001 tttttgtata gctctgcatc acgatgctct ggcttgaata ttggatagaa gttgaaactt
     3061 acaatttttt tcccctcctt gtttgcggac cattcgaatg tataaggact tagttcgtcc
     3121 agctcatttt ttgcaggttc aattactttc cggacaaaat cgtttgtctt tgcgtattta
     3181 tcttgtactt taaacatttc tttgagctgt tcaagtggat agattagttt tgttttctga
     3241 ccgcttaaaa gttcgtagaa ccgcatagaa tatacactct taaacttcat cgcagtggct
     3301 aattcgtatt tgcgaaaccc ttttgaaaaa tctaagcagc agtcccatat gtgtgagtct
     3361 atttggaatg atacaacaga tgaacgcttc tttatctttg gcaatgcaat aatagaaatg
     3421 cttatccatt ctttttcatc ctcataggta aagattttct tttgtagaga taacagtgct
     3481 tgttttacac gtgtgtagtt ttcatcactt tctccattta gcaatgaagc aataggcatt
     3541 gtgatgtgaa cggtatcaaa aagtgtgtgt tctatttttt tacaatcagt tgcaaaccta
     3601 actccttgga gttcaccttg agccatttct acaattctat aaagtatgcg cttctcataa
     3661 acggaaaagt catacttggc tgtcgtcata atatagcttt gtatttggtc tttattgacg
     3721 actgttacac tgttgttctt ctgttgtttc gttttcatca tctacacgaa aggataaaat
     3781 actgttggct ttatctatgt gaggagcgta tatttcagaa aattttgcga ggatagaaat
     3841 tgcgtttttt accctttcaa attcttcttt cttaaaatga actatgattt tcttcatcct
     3901 ttattgatta ttagtatgtt gcgcaaatat aataagtaat tacgacttgt gcaaatggaa
     3961 atcgtagatg atgcaaaata acattcaaaa agtcgtattt ggaagagaaa ataacattca
     4021 aaaagtcgta gtaatgtgtt aaatagcatt caaaaagtcg tagtaatgtg ttaaatgaat
     4081 tgtgtaagcg gttggatttc agcgtgattt ttagttaaaa aaaaagctga taagcatata
     4141 aacaagttat gctttataac aagtcattga ttttttacgg ataagtggtt gatttactgt
     4201 cggaaaaaga aaaacaatag ggaaaaaaag caaagcaaaa ccaaccaacg ggcggtagga
     4261 ctgtgaacgg ctttttatgg cgtgtacaca tttgtgtaca aaaagtttgt attttattga
     4321 aatatagcta tctttgtact gaatttaaaa gcaaacagat
//
