LOCUS       NZ_CP103164             2822 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Parabacteroides distasonis strain BFG-426 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP103164
VERSION     NZ_CP103164.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30323342
            Assembly: GCF_024759585.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1  (bases 1 to 2822)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2822)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 430x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 06:28:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,585
            CDSs (total)                      :: 4,482
            Genes (coding)                    :: 4,227
            CDSs (with protein)               :: 4,227
            Genes (RNA)                       :: 103
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 256
            CDSs (without protein)            :: 255
            Pseudo Genes (ambiguous residues) :: 0 of 256
            Pseudo Genes (frameshifted)       :: 202 of 256
            Pseudo Genes (incomplete)         :: 58 of 256
            Pseudo Genes (internal stop)      :: 18 of 256
            Pseudo Genes (multiple problems)  :: 20 of 256
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103164.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2822
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="BFG-426"
                     /host="Homo sapiens"
                     /db_xref="taxon:823"
                     /plasmid="unnamed2"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="2003-05-05"
     gene            288..1391
                     /locus_tag="NXW68_RS22900"
                     /old_locus_tag="NXW68_22900"
     CDS             288..1391
                     /locus_tag="NXW68_RS22900"
                     /old_locus_tag="NXW68_22900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_007572070.1"
                     /translation="MGATSIHVQAVKPGSEIHNFREKELDYVRPELSHLNESWVGDSIS
                     HRLESAKQRYFDTVGQKMQTKAAPIREGVIVIKQETTMQELQQFAAVCKERFGIEAFQI
                     HIHKDEGYMNAKQWTPNLHAHVVFDWTQPNGKSVRLSRDDMAELQTIASEALGMERGVS
                     SDRKHLSAMQYKTECAKEQLQELSNDISSALDKHKDVQNQLLQLQKELRSIETKKNVQK
                     LISKASEKFYGLIGKTVNDREKDALKAKIKALEGENEQLSDRLGKAILEKERNGTKVFK
                     AENDKEYYRQQMDNARTTSNRLRTENQELKTETKELKKELGKMKDLFNSEQLEALRHHF
                     PNISKAMEEGKDLLKQITRSRGFGMGM"
                     /name="plasmid recombination protein"
     gene            1901..2491
                     /locus_tag="NXW68_RS22905"
                     /old_locus_tag="NXW68_22905"
     CDS             1901..2491
                     /locus_tag="NXW68_RS22905"
                     /old_locus_tag="NXW68_22905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008670455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_008670455.1"
                     /translation="MENKKVLKLTDFQKNEENPFMKQAIEGIENHVVKKYKSSTGSDKK
                     AVVAVADTDTGEVFKTSFIRQIEVDEEQFAKLYLANFAAFFNLSQSAIRVFGYILTCMK
                     PKNDMIIFDRRKCLEYTQYKSDKAIYKGLAELVQSEIIARGPNEYNWFINPLIVFNGDR
                     VSFTKTYVRKKTLAAQKKEEAEKRQLSLGFDEL"
                     /name="hypothetical protein"
     Typing          1902..2481
                     /name="rep_cluster_1868"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="80.479"
                     /coverage="95.0"
                     /evalue="2.71e-121"
     Typing          289..1388
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.913"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgtcggatg tccgtcaatt aactccagcg gcttgtattt tggtaactct cccgtatcgg
       61 tcagctaccg tttggtcagc aacaaaggta gtactttatt gtcgcaaatc caaatgtttt
      121 cccctttatt tgtgcattta caaaacattc actaacttcg cacctatgca gtatggtgat
      181 agcacactag caccctaaag ggtacgtgtg taaggggaca agccccctta accccctgtc
      241 agccggctgt caccggctgt tatcgattgt cacaaaaatg ttaacttatg ggagcaacaa
      301 gtattcatgt acaagcagtg aagccgggga gcgagattca caactttagg gaaaaagagt
      361 tggactatgt tcgtccggaa cttagtcatt tgaatgaaag ctgggttgga gatagcatct
      421 cccatcggct ggagagtgcg aaacagagat atttcgatac ggttgggcag aagatgcaga
      481 ctaaagcagc acccatacgg gagggggtaa tagtaatcaa gcaagaaacc accatgcagg
      541 aactccagca attcgctgcg gtctgcaagg aacgtttcgg tattgaagcg tttcaaatcc
      601 atatacacaa ggacgaagga tacatgaacg caaagcaatg gacacctaac cttcacgccc
      661 atgtagtttt cgattggacg cagccgaacg ggaagagtgt gcgtttatcg cgtgatgaca
      721 tggcagaact ccaaaccata gcatctgaag cactgggcat ggaacgtggt gtttcttctg
      781 atcgcaaaca cttatcggct atgcagtaca agaccgaatg tgcgaaagaa cagcttcagg
      841 aactatccaa cgatatatcc agtgcgttag acaagcacaa ggacgtgcaa aaccagcttc
      901 ttcagcttca gaaagaacta cgttccattg aaacaaagaa aaacgtccaa aaactcattt
      961 ctaaggcttc agagaagttt tacggcttga tagggaaaac ggttaacgat agggaaaaag
     1021 atgccttaaa agccaaaata aaggctttag agggggaaaa tgaacagcta tccgatagac
     1081 tgggaaaggc tatacttgaa aaagagcgaa acggcacaaa ggtattcaaa gccgagaacg
     1141 acaaggagta ttatagacag caaatggaca atgcaaggac aaccagtaac cgactaagaa
     1201 cggagaacca agaactaaag accgaaacca aggaattgaa aaaagaactt ggtaagatga
     1261 aagacttgtt caattccgaa caactggagg ctttaaggca tcatttccca aacatatcaa
     1321 aagctatgga agaggggaaa gacctactca agcaaatcac cagaagcaga ggtttcggca
     1381 tgggtatgta accccccccc gcccccaaag ggggagcgac caaacggcag cttcactcaa
     1441 tggagtgtta cgccgttcgg gttcggaaga aattttgcag ggttcgaaaa acggttgtgt
     1501 gcttattcga aaaaaagttt atggtgtggg cgctcgtcct tattcgaaaa aaagtttatg
     1561 gtgtgggcgc tcgtcgggac gggtggtccc gccccttgcc gctgggcgct ccccgaccga
     1621 tgatttttta agtagttgat tatatgccgt ttttagggta taataagaac ttaagaaata
     1681 gaataagtta agtagttgat actcaatata gggtattttc catattggaa aatcagattt
     1741 tccatattag aaagtcactc tttcctatta gatgttaaaa aggaaaatat attttgcttt
     1801 tttattgtat taatggaaat ttaaatattc ctttgtggaa aatcaaatta tactttttca
     1861 ccgatatata gaaagtcaaa tttgcctaaa tagaatgttt atggaaaata agaaagtact
     1921 caaattaacc gattttcaaa aaaacgaaga aaaccccttt atgaaacaag caattgaagg
     1981 gattgaaaat cacgttgtta agaaatacaa aagtagtacg ggaagtgata aaaaagctgt
     2041 agttgctgtt gctgatacag atacaggaga agtattcaaa acctcgttta tccgacaaat
     2101 agaagtagat gaagagcaat ttgcaaaact ataccttgcg aattttgccg cttttttcaa
     2161 tctatcacaa tcagctattc gggttttcgg gtatattcta acttgcatga agcctaagaa
     2221 tgatatgata attttcgata ggcgaaaatg cttagaatac acccaataca aatcagacaa
     2281 agccatatac aaaggattgg cagagctcgt acaaagtgaa atcatagcaa gaggtccaaa
     2341 cgaatataat tggttcatta atccgttgat tgtctttaat ggggataggg tttcatttac
     2401 aaaaacatac gttcggaaaa agactttagc tgcccaaaag aaagaagaag cagagaaacg
     2461 acagttatca cttggttttg atgaactgta acactccatt gagtgaagct gccgtttggt
     2521 cgctccccct ttgggggcgg gggggggata gataaagttc ctctatgtaa agttataatg
     2581 ggggatgaaa ggcaaggttc gctaacctta ccccgattgt ttatgcttcc cagcattcaa
     2641 tctatccccg tttatgggtt tctctttcac cctacaaaga taacctcatg ggggaaaaat
     2701 gtccaagaat atggggtaaa aactatcaag tcggtagaaa ataagtatct ttgaagtaca
     2761 tttttagtag aggtactggt atgcctagac gaagcagata ggcaaaaata aagccgctgg
     2821 gg
//
