LOCUS       NZ_CP103149             3755 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Parabacteroides distasonis strain BFG-149 plasmid unnamed1, complete
            sequence.
ACCESSION   NZ_CP103149
VERSION     NZ_CP103149.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30323194
            Assembly: GCF_024759485.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1  (bases 1 to 3755)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3755)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 199x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 06:07:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,557
            CDSs (total)                      :: 4,454
            Genes (coding)                    :: 4,364
            CDSs (with protein)               :: 4,364
            Genes (RNA)                       :: 103
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 40 of 90
            Pseudo Genes (incomplete)         :: 52 of 90
            Pseudo Genes (internal stop)      :: 19 of 90
            Pseudo Genes (multiple problems)  :: 17 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103149.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3755
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="BFG-149"
                     /host="Homo sapiens"
                     /db_xref="taxon:823"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
                     /collection_date="1985-10-21"
     gene            1..987
                     /locus_tag="NXX59_RS22740"
                     /old_locus_tag="NXX59_22740"
     CDS             1..987
                     /locus_tag="NXX59_RS22740"
                     /old_locus_tag="NXX59_22740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008782578.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_138272249.1"
                     /translation="MARVITENKNIMQSYIFTAAKYDFTAYEKRIMYRLVECAQDEIAG
                     LKIKDHMHKIIPVQLGREITLPTSSILRDEKDENYTIAKKAFLSLSKKHIIYEDENYWT
                     ATPIITKPKISKKEGTVTFLVFDEIWKCILDFTKGYRKYELITAMRFKSVYSMRFYELM
                     TGQKKPLFVPLEGPEGLRERFGLQGKYGKVNDFRRKVIDVAKAELDESSPFSFVAEEVT
                     EGRKIIGWTFYPTFFENREDPALQEQKRMAKVTARLQIDDEVYKYLKYSFGFEADEINR
                     NKKTLIDGQNRIPNFIDFLAGLKGGAREARSEKAYVIGAIKTKLKEV"
                     /name="replication initiation protein"
     gene            1008..1268
                     /locus_tag="NXX59_RS22745"
                     /old_locus_tag="NXX59_22745"
     CDS             1008..1268
                     /locus_tag="NXX59_RS22745"
                     /old_locus_tag="NXX59_22745"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_138273626.1"
                     /translation="MESNEKFATYKEFGKMLREVADLCAKLGDTPLYDSAPDLKEKVFY
                     VVNRGAYDAYIEPWMRDFAEHPFDVTAAKKWAKEVEERKGR"
                     /name="hypothetical protein"
     gene            1493..1912
                     /locus_tag="NXX59_RS22750"
                     /old_locus_tag="NXX59_22750"
     CDS             1493..1912
                     /locus_tag="NXX59_RS22750"
                     /old_locus_tag="NXX59_22750"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_258912366.1"
                     /translation="MATKQTSVNVQPVKGGSEEHNKREKQLDYVRKDLSHLNQYWESDT
                     QANRLANIKALYQSKTGQKMQAKATPIREGVVVIQSSTTMADLHRLADAYRDRLGIEVF
                     QIAIHRDEGYQKSKDWKPNLHAHLVFDWTNHRQVC"
                     /name="hypothetical protein"
     gene            1938..2732
                     /locus_tag="NXX59_RS22755"
                     /old_locus_tag="NXX59_22755"
     CDS             1938..2732
                     /locus_tag="NXX59_RS22755"
                     /old_locus_tag="NXX59_22755"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_258912364.1"
                     /translation="MQTITAEVLGMERGQSSEKKHLTAQQFKAAAEAQRAEQLKEQVAE
                     LSTAKAAKEETINTIKTVGKYVVDAVTGKAKAKENALQERVTKLEVQLPTEREKGRQEG
                     GKQVLQAILSAARLKLEDLTPENIGKRWRLWFDKAKSLEQEVKQLKEAAEAQKEAAYWA
                     KINFGNERYREGLKGSQTRIKGLEEDVAELIREYAHGDPDVILHYSTPREDRLFLSPKE
                     MERQEAERKKREQEGKKKAPQVTEAPKQERQEEQKRSWGFRR"
                     /name="hypothetical protein"
     gene            complement(2782..3054)
                     /locus_tag="NXX59_RS22760"
                     /old_locus_tag="NXX59_22760"
     CDS             complement(2782..3054)
                     /locus_tag="NXX59_RS22760"
                     /old_locus_tag="NXX59_22760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295504.1"
                     /GO_process="GO:0008219 - cell death [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
                     /protein_id="WP_138272246.1"
                     /translation="MYSVTYSDEALASIAKFKRSNPASFKKITKFIEELHEHPRTGTGH
                     PEPLRGYGGNVYSREVNKKDRLVYEIYEEVVNVFVISAEGHYSDK"
                     /name="Txe/YoeB family addiction module toxin"
     gene            complement(3058..3318)
                     /locus_tag="NXX59_RS22765"
                     /old_locus_tag="NXX59_22765"
     CDS             complement(3058..3318)
                     /locus_tag="NXX59_RS22765"
                     /old_locus_tag="NXX59_22765"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_258912365.1"
                     /translation="MATFNYTTREFREKQALILDKVDAGEDIIIHRGIKKSYMLVPVHK
                     EDYTISEEFREKIAKAREDYKAGKGVTCKTVEQSMALLESL"
                     /name="hypothetical protein"
ORIGIN
        1 atggcacgag ttataaccga gaacaaaaac atcatgcagt cgtatatctt caccgctgcc
       61 aagtacgatt tcacagctta cgaaaagcga atcatgtaca gattggtgga gtgtgcgcaa
      121 gatgaaattg cagggctgaa aatcaaagac cacatgcaca aaatcatacc tgtgcaatta
      181 ggcagggaaa ttaccttgcc gacttcgtct attctcagag acgaaaagga cgaaaactac
      241 acaatcgcca aaaaggcatt tctgagtctt agcaagaagc atataatcta cgaagacgag
      301 aactattgga ctgcgactcc gattattacg aagcccaaaa tatccaagaa agaggggact
      361 gttacttttc tcgtgtttga tgagatttgg aagtgcatcc ttgactttac caaaggctat
      421 cgaaagtacg aactgataac ggctatgagg tttaaaagcg tctattcgat gcggttctac
      481 gaactaatga cagggcagaa aaagcctctg tttgtaccat tagaaggtcc tgaaggactt
      541 cgtgagagat tcgggctgca agggaaatac ggaaaagtaa atgactttcg cagaaaagtc
      601 atcgatgtgg ccaaagctga acttgatgaa tcctctccat tctctttcgt tgccgaggag
      661 gtaacagagg ggagaaagat tatcgggtgg actttctatc ctactttctt cgaaaaccga
      721 gaagacccgg cactacagga acagaagcgc atggccaagg taacggcacg gctgcagatt
      781 gatgacgagg tgtacaaata cctcaagtac tcatttggtt tcgaagccga cgaaatcaac
      841 aggaacaaga aaacgctcat cgatggtcag aaccgaatcc ccaacttcat agacttcctc
      901 gcaggtctga aaggtggagc aagggaagct cgaagcgaaa aagcctatgt cattggagct
      961 atcaaaacca aattgaaaga agtctaatcg tgtaacataa tcaaactatg gaatcgaacg
     1021 aaaaattcgc aacttacaag gagtttggca agatgctccg agaggtggca gatttgtgcg
     1081 ccaaattagg cgatacaccc ttgtatgatt cagcacccga cctcaaagaa aaggtgttct
     1141 acgtggtcaa tcgaggcgca tacgatgcgt acatcgagcc atggatgaga gactttgccg
     1201 aacacccttt cgacgtgacg gcagccaaga aatgggctaa agaagtcgaa gaaagaaagg
     1261 gcagataacc tacctttttc tgtaacggaa tcgcccctcc tgatgttccg ctggatggaa
     1321 tattgggagg ggcttttgct tgttactttc ggataaaatc gctatcttcg cgcgtgggta
     1381 atccaagtta tggttatagc acactataac cctaaagggt tgtgtgctct ccgagggggt
     1441 aggggcaagc ccctaccgac cccatggcag cccgacacta aaacgtaaca ctatggcaac
     1501 aaaacaaacc tccgtcaacg tgcagccggt caaaggcggc agcgaagaac acaacaagcg
     1561 agagaagcag cttgactatg tgcgcaagga tttgtcgcat ctcaaccagt attgggagag
     1621 cgacacacaa gccaaccgcc ttgccaacat caaagccctg tatcaatcca agacaggaca
     1681 gaagatgcaa gccaaggcaa cccctattcg tgagggtgtt gtcgtaatcc aatcctccac
     1741 caccatggcc gacctccacc gattggccga tgcttatcgc gatcggctcg gcatcgaggt
     1801 ctttcaaatc gctatccatc gggacgaggg ctatcagaaa tccaaggatt ggaagcccaa
     1861 cctccatgcg catcttgtgt ttgactggac aaaccacagg caagtctgtt aaactgaacc
     1921 gtcaaaagat ggccgaaatg cagaccataa cagccgaagt cctgggcatg gagcgaggac
     1981 agagcagcga gaaaaagcac ttaacggcac aacaattcaa agcagcagca gaagcccagc
     2041 gagccgaaca actaaaagaa caggtagcgg aactcagtac ggccaaggca gccaaagagg
     2101 aaaccattaa cacaatcaag acagtgggca aatatgttgt ggatgcagtt acaggtaagg
     2161 caaaagccaa ggaaaatgcc ctacaagagc gtgtaacgaa gttggaggta caactaccaa
     2221 ccgaaagaga aaaaggccgt caggagggcg gaaaacaggt tttacaggct attctgagtg
     2281 ctgcacgctt gaagctggaa gacctgactc ccgaaaacat cggaaagcgg tggagattgt
     2341 ggtttgacaa agccaaatcg ctggaacagg aggtgaagca gctcaaagaa gccgcagaag
     2401 cccaaaaaga agccgcctat tgggctaaaa tcaatttcgg gaatgagagg taccgcgaag
     2461 gcttaaaagg ctctcagacg cgaattaaag ggcttgaaga agatgtagcc gaactgatac
     2521 gggagtatgc ccatggcgac cccgatgtga tactacacta ttccacaccg agagaagacc
     2581 gcctttttct gtcgcccaag gaaatggaac ggcaggaagc cgaacggaag aaaagagaac
     2641 aagaggggaa aaagaaagct ccgcaagtca ccgaagctcc caaacaagaa cggcaagaag
     2701 aacagaaacg ctcatgggga ttcagacgct aacgctaaaa aagagtgggc tacactacga
     2761 tagctcactc tttttctgtt tttacttgtc gctataatgt ccctctgcgg aaatcacaaa
     2821 cacattcacg acctcttcat agatttcgta aacaagcctg tctttcttgt tcacctccct
     2881 tgaatagacg ttccctccgt accctctcaa tggctccgga tgcccggttc cggtacgagg
     2941 gtgttcgtgc agttcttcga tgaatttcgt aatcttcttg aaagatgcag ggtttgacct
     3001 tttgaatttc gcaatggaag ccaaggcttc atcgctgtat gtaacgctat acatgggcta
     3061 caacgattca agtaaagcca tggactgctc aacagtcttg caagttacac cttttccagc
     3121 tttgtaatct tcccttgcct tggcaatctt ctctctgaac tcttcactga ttgtgtaatc
     3181 ttccttgtga actgggacaa gcatatagga ctttttgata cctctgtgaa tgataatatc
     3241 ctcaccggca tcaaccttat ccaaaatcaa agcctgcttt tctctaaatt ctcttgttgt
     3301 gtagttgaat gttgccataa atccattgtt tttaggttcg gtgcaaagat aataaatata
     3361 tttggtgaca ccaaatggta cacggcaaaa aaagctcttc aataaccgca caccccctcc
     3421 ccccctccga gggggtgttg tcttgtccgc caccgcctgg gcgaagcttc ttttttttcc
     3481 cttttgtttt ttcttctttt tccgaaagtg ggagcgcaag cgacctgtat aagcaagtct
     3541 ctgtcttaag acatggacta tctatgtcta tcctcgcgcg cgcgcattat gcgaggaaaa
     3601 aggcctctaa gtacgacttt tttaatgtcc tacgacgact tttttaatgt tccaaaactc
     3661 cttttactac gactttttta atgttgtatg cgtcttacta ttgtgtaagt cgcatttagt
     3721 ttttatcttt gccgagtact tcaaaaacta catcc
//
