LOCUS       NZ_CP103101             4142 bp    DNA     circular CON 14-SEP-2023
DEFINITION  Bacteroides ovatus strain BFG-179 plasmid unnamed1, complete
            sequence.
ACCESSION   NZ_CP103101
VERSION     NZ_CP103101.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30323212
            Assembly: GCF_024759225.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides ovatus
  ORGANISM  Bacteroides ovatus
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 4142)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Genome Sequencing of Bacteroides fragilis Group Isolates with
            Nanopore Technology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4142)
  AUTHORS   Tisza,M.J., Smith,D. and Dekker,J.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2022) LCIM, National Institute of Allergy and
            Infectious Diseases, 9000 Rockville Pike, Bethesda, MD 20892, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 107x
            Sequencing Technology             :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/14/2023 06:25:06
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,404
            CDSs (total)                      :: 5,310
            Genes (coding)                    :: 4,983
            CDSs (with protein)               :: 4,983
            Genes (RNA)                       :: 94
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 327
            CDSs (without protein)            :: 327
            Pseudo Genes (ambiguous residues) :: 0 of 327
            Pseudo Genes (frameshifted)       :: 258 of 327
            Pseudo Genes (incomplete)         :: 66 of 327
            Pseudo Genes (internal stop)      :: 23 of 327
            Pseudo Genes (multiple problems)  :: 19 of 327
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP103101.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4142
                     /organism="Bacteroides ovatus"
                     /mol_type="genomic DNA"
                     /strain="BFG-179"
                     /host="Homo sapiens"
                     /db_xref="taxon:28116"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: Bethesda"
     gene            1..252
                     /locus_tag="NXW12_RS27035"
                     /old_locus_tag="NXW12_27035"
     CDS             1..252
                     /locus_tag="NXW12_RS27035"
                     /old_locus_tag="NXW12_27035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004295507.1"
                     /translation="MEALSVREYRNNLAASFTKADNGEQVLIRRKNEIYALVKVGREDL
                     MITPELQARIDKAREEIKSGKCVTLKSSEDIDAYFDSL"
                     /name="hypothetical protein"
     gene            249..524
                     /locus_tag="NXW12_RS27040"
                     /old_locus_tag="NXW12_27040"
     CDS             249..524
                     /locus_tag="NXW12_RS27040"
                     /old_locus_tag="NXW12_27040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327436.1"
                     /GO_function="GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YoeB family toxin"
                     /protein_id="WP_004327436.1"
                     /translation="MMYTIRVSDGVDKVIAKWKKSNPNLFKKYKKIYKELLEHPKTGLG
                     HPEALRGGGDITWSRHITAHDRIIYDIYEEVVEVYILEVEGHYNDK"
                     /name="type II toxin-antitoxin system YoeB family toxin"
     gene            535..732
                     /locus_tag="NXW12_RS27045"
                     /old_locus_tag="NXW12_27045"
     CDS             535..732
                     /locus_tag="NXW12_RS27045"
                     /old_locus_tag="NXW12_27045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007209655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005683054.1"
                     /translation="MVEYCVYWLENGEPMHEVFSNLAAAEMYSCAIRGKENVEWVEVSE
                     EEAIDLDELEDMFPDDFCGV"
                     /name="hypothetical protein"
     gene            926..1225
                     /gene="mbpA"
                     /locus_tag="NXW12_RS27050"
                     /old_locus_tag="NXW12_27050"
     CDS             926..1225
                     /gene="mbpA"
                     /locus_tag="NXW12_RS27050"
                     /old_locus_tag="NXW12_27050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpA"
                     /protein_id="WP_005683055.1"
                     /translation="MEVRRNEKITFRCTRYEKLALAEQAARCSMSTSEYCRSLSLGGRP
                     RERYTEEERQLLRDIAQLKGTLQRLNNYFGGRQYREVFEENQALITELKKILSR"
                     /name="mbpA"
     gene            1222..2016
                     /gene="mbpB"
                     /locus_tag="NXW12_RS27055"
                     /old_locus_tag="NXW12_27055"
     CDS             1222..2016
                     /gene="mbpB"
                     /locus_tag="NXW12_RS27055"
                     /old_locus_tag="NXW12_27055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007560590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpB"
                     /protein_id="WP_176858025.1"
                     /translation="MIGKGKSISHGTAALEYDLAKEIDGQTAAIEIARHELYGCTGAEM
                     VQEMKPYHADFPNVKNNCLRFEVSPSIEESATFTDADWAELGNDFMQRMGLANHQYIII
                     RHSGTESKKEQAHLHILANRVSLSGELYRDNWIGKKATEAANAIAKERNFVQSKDIGKA
                     NKAEIKEAMDDVLKKMQGFDLTKFKEELGRRGFKVREARASTGKLNGYYVTARSGTEYK
                     ASEIGKGYTLAHIERTQSKLKYNSMNISHGNKLTPGSGSFHR"
                     /name="mbpB"
     gene            1973..2419
                     /gene="mbpC"
                     /locus_tag="NXW12_RS27060"
                     /old_locus_tag="NXW12_27060"
     CDS             1973..2419
                     /gene="mbpC"
                     /locus_tag="NXW12_RS27060"
                     /old_locus_tag="NXW12_27060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpC"
                     /protein_id="WP_258895044.1"
                     /translation="METNSHPEAAASTVKQGQYSPRKRKDTAPKVNPQLAIELFFQEMG
                     RIEAYTKRIEDATSRKVQIDGKSLESAENRHVLSDFERQGYRMKNGGYVDKRISFYSIL
                     CAVISLLFACFMCYLWTDAAKDRDNYKQYYEYFQEQAREQKGNK"
                     /name="mbpC"
     gene            2438..2668
                     /locus_tag="NXW12_RS27065"
                     /old_locus_tag="NXW12_27065"
     CDS             2438..2668
                     /locus_tag="NXW12_RS27065"
                     /old_locus_tag="NXW12_27065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005683050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005683050.1"
                     /translation="MGTTEHEEPRFFFILNKGAKSGGEITHAVLNGSIVSKPAGWDAFH
                     GLALAKEKLSSEEIQQQMKELGVEMEIVPLI"
                     /name="hypothetical protein"
     gene            complement(2705..3730)
                     /locus_tag="NXW12_RS27070"
                     /old_locus_tag="NXW12_27070"
     CDS             complement(2705..3730)
                     /locus_tag="NXW12_RS27070"
                     /old_locus_tag="NXW12_27070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008657007.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_005683051.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKHTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLDNLKDRLGIPADKYKDKNGKDRIDNFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEGKELQAKVTARYQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQEKITDLIGELALLNGKSREKNNPKGWIINALKGKIKD
                     K"
                     /name="replication initiation protein"
ORIGIN
        1 atggaagcat tatcagtaag agaataccga aacaacctcg cagcgtcttt caccaaagct
       61 gacaatggcg agcaggtact aattcgcagg aaaaacgaga tttacgcttt ggtaaaagtt
      121 ggtcgtgaag atttgatgat aaccccggag ctgcaagcaa ggattgacaa ggcaagggaa
      181 gaaatcaaat ccggaaagtg tgttaccctc aaaagcagtg aggatattga cgcttatttc
      241 gacagtctat gatgtacaca attagggttt ccgacggggt ggataaggtg attgccaaat
      301 ggaagaaatc aaaccccaat ttgttcaaga agtataagaa aatctacaaa gaattgttag
      361 agcaccctaa gactgggctt gggcatcccg aagcgttaag gggcggtggg gatattacat
      421 ggtctcgaca catcaccgcc catgaccgga taatctatga catttacgag gaagtggtag
      481 aggtctatat tttggaggta gaggggcatt acaacgataa atgataaaac tgttatggtc
      541 gaatattgtg tttactggtt agagaacggc gagcctatgc acgaggtgtt ctctaacctt
      601 gccgccgccg agatgtactc atgtgcgata agagggaaag aaaacgttga atgggtggag
      661 gtgtccgaag aagaagccat tgatttggac gaactggaag acatgttccc ggatgacttc
      721 tgcggcgtgt aatccccttg ggtagaaatg gggtagaaat tgttaggctg tggggggatt
      781 ttctaacacg ccggggcttt ttgccgggcg gttagcatgg atgtattccc atgcggcatg
      841 tgtatatata gcaagaagtg tccttgtcgg acaattcttg cttttctcgc tttgctcaaa
      901 aagattttaa gattaccttt gtgacatgga agtaagacgg aacgaaaaga ttacattccg
      961 ctgtacccgg tatgaaaagc tggcacttgc ggagcaggca gcccgatgta gcatgagcac
     1021 atcggagtat tgccggagtt tgtcccttgg aggtcgccca agggaaaggt acaccgagga
     1081 ggaacggcag cttctccggg acatagccca gttgaaagga acgctccaac ggctgaacaa
     1141 ctacttcggt ggtcgccagt accgggaggt atttgaagag aatcaggcac taatcaccga
     1201 acttaaaaaa atactttcac gatgataggg aaaggaaaga gcatatcgca tggtacggct
     1261 gcactggagt atgaccttgc caaagagata gacggacaga cagcagccat cgagatagcc
     1321 cggcatgaac tttacgggtg tacgggtgcg gaaatggtac aggaaatgaa accataccac
     1381 gctgattttc cgaacgtaaa aaacaattgc ctacgtttcg aggtcagtcc ttcgatagag
     1441 gaaagcgcca cctttacgga tgcggactgg gcggaacttg gtaacgactt catgcagcgc
     1501 atggggctgg cgaaccacca gtacatcatc atccggcaca gcggtacgga gagcaaaaaa
     1561 gaacaagccc acctgcatat actggcaaac cgggtttccc tttccgggga actgtaccgg
     1621 gataactgga tagggaaaaa ggcaacggaa gccgccaacg ccatagccaa ggaacggaac
     1681 tttgtacagt cgaaggacat cggcaaagcc aacaaagcgg aaatcaagga agccatggac
     1741 gacgtcttga agaagatgca gggctttgac ttgactaaat tcaaggaaga acttggtagg
     1801 agaggtttta aagttcggga agccagggca agcaccggaa aacttaacgg ctactacgtc
     1861 acagcccgaa gcggtacgga gtataaggcg agcgagatag ggaaaggcta cactctcgcc
     1921 catatcgagc ggacacaaag caaactgaaa tataactcaa tgaacatatc tcatggaaac
     1981 aaactcacac ccggaagcgg cagcttccac cgttaagcag ggacagtaca gcccccggaa
     2041 aagaaaagac acagcaccaa aggttaaccc gcagcttgcg atagaactgt tttttcaaga
     2101 aatgggacgt attgaagcct atacaaagcg catagaggat gcaacatccc gaaaggtaca
     2161 aatagacggg aaaagcctcg aaagtgccga aaatcgccac gtattgtcgg actttgaacg
     2221 gcaggggtac agaatgaaaa acggcggtta tgtggacaaa cggatttcgt tctactcaat
     2281 cctttgtgct gttatctccc tattgttcgc ttgtttcatg tgctatcttt ggacggatgc
     2341 agccaaagac cgggacaact acaagcagta ttatgaatac ttccaagagc aggcaaggga
     2401 acaaaaggga aacaaataaa ctctaacttt acgaattatg ggaacaacgg aacacgaaga
     2461 accccggttc ttcttcatac tgaacaaggg tgcgaagtcc ggcggcgaaa tcacccatgc
     2521 cgtcctaaac ggtagtatcg tttcgaagcc ggcaggctgg gacgcctttc atgggcttgc
     2581 actggcgaaa gagaaactaa gcagcgagga aatacaacag cagatgaaag aacttggtgt
     2641 agaaatggaa atcgttcctc tgatttgaca agattacccg gagtgtttca gccgggtaat
     2701 cctgttactt atccttgatt ttccctttaa gggcgtttat aatccaccct ttcggattgt
     2761 tcttttctcg tgattttccg tttaggagag ccagttctcc gataaggtcg gttatctttt
     2821 cttgtgccgt tatgaatgtc tctttgttcc ggtttatctc ttccgatgtg aaaccgcagg
     2881 aataacggag atactcgtat acatggctgt ctatctgata tcgtgctgta acctttgcct
     2941 gcaattcttt cccttccagt tcttcatccc tgaactgtgg ctgatagacc gggtaaaacc
     3001 taaatccggt caccttgcta cgtttgttgt ttgggttttc acgcactttc acgtagttga
     3061 aagtgtatgg gcaactctca tcaagcgcag cctttgcagg ttttaaaacc ctttcctcga
     3121 agttgtcaat tctatctttt ccgttcttgt ccttgtactt gtccgctggt atgccaaggc
     3181 ggtctttcaa gttgtcaagg gatatatcca aagggtacac ttgcccactc attagcatgt
     3241 aaaacctaag ggaatacccg gtaggcagcg caagagcctt gtttaattca aactctctgt
     3301 accccttggc gaacttggta aacacatccc aaaggtcatt agacacacga aaggttataa
     3361 tgccagtgtg ttttttatat ttgggattag atataaatcc gcacttccac cactcctcgt
     3421 catcttcgta agtgaaaaaa cgtcctgcca aagaatcgag tgcggctatg atttcattgt
     3481 aatcacgtcc ggaaaaaata acgtccgaga catgcatttg tgcatcaaca tcccaaagtc
     3541 catgctcaaa tttgcgtttc gtacctgcat aatctttcag ctttacccct ttcaattctg
     3601 cctggcatgc ttccaagata cgaagtacta ttctttgttc gtgtatggac atatcttgct
     3661 gtttagacca tgtatatacc catgaaacaa caacatcttt gtttttggta ataggtagtt
     3721 tctttttcat aagcgattga tttgctgcaa atatacataa aacctacatt gaaacaaaaa
     3781 aagaagggta aaactcccaa agtgtaggga atagtgaggt gaaaaactcc caaagtgtag
     3841 gattaaaact cccaaaatgt agggaaactc atgctttaat ccctttattc atgggtattt
     3901 gcgaagaagt gatagagcat attacagacg atgcttataa cagacaaggg aaatttatag
     3961 agttaaatgg ctgatttact gtcggaaaaa gaaaaacaat agggaaaaag agcaaagcaa
     4021 aaccaaccaa cgggcggtag gactgtgagc ggctttttat gtcgtgtaca catttgtgta
     4081 caaaaagttt gtattttatt gaaatatagc tatctttgtg ctgaatttaa aagcaaacag
     4141 at
//
