LOCUS       NZ_CP102761             2058 bp    DNA     circular CON 07-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky isolate
            AH19MCS11 plasmid pYUAHMCS11-5, complete sequence.
ACCESSION   NZ_CP102761
VERSION     NZ_CP102761.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30275503
            Assembly: GCF_024722475.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Wang,J.
  TITLE     whole genome sequences of Salmonella enterica serovar Kentucky
            AH19MCS11
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2022) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/06/2023 05:22:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,890
            CDSs (total)                      :: 4,768
            Genes (coding)                    :: 4,622
            CDSs (with protein)               :: 4,622
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 49 of 146
            Pseudo Genes (incomplete)         :: 103 of 146
            Pseudo Genes (internal stop)      :: 22 of 146
            Pseudo Genes (multiple problems)  :: 26 of 146
            Pseudo Genes (short protein)      :: 1 of 146
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP102761.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /serovar="Kentucky"
                     /isolate="AH19MCS11"
                     /isolation_source="chicken meat products"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pYUAHMCS11-5"
                     /geo_loc_name="China: Anhui"
                     /lat_lon="30.56 N 118.45 E"
                     /collection_date="2019"
                     /collected_by="Jing Wang"
     gene            278..469
                     /locus_tag="NWA04_RS24415"
     CDS             278..469
                     /locus_tag="NWA04_RS24415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     gene            793..1782
                     /locus_tag="NWA04_RS24420"
     CDS             793..1782
                     /locus_tag="NWA04_RS24420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_040207214.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     Typing          complement(1509..1700)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 atgtgttttt ggagtaccgc catcacgatg ccggtaccaa aaacgatccg tcagggctgc
       61 gccccgacac cctgccaaca cctcacgccg ccagattaaa atctgtcagc gttcgccgtt
      121 cccgaaatcg tcaaacgcta aatcgcgggg tcccgctggc ttgccagtgg gttccgattt
      181 agtgattgac gacagcaccc gtaaaatact tacagggggt ggttgtgatc acgcagtgag
      241 cgcaaccacc tgataagcgt tttttgaggg ggtaggcatg atcgtcagac tggataaccg
      301 gctgtttgag attctcgatg agatgggtgc gcatgtggat cgggaaatgt tcatggcggc
      361 ctatgcgcag cggaaggccg aaaaagaaaa tgatccccgg catatccgtc aacggaaact
      421 gaccaggttg gctcatgatt tgatgtcaga atcggaccct gaattgtgag cctcgcgtgc
      481 gcgcgaggga aatcggtcag aaaatggccg gagtctcgtg cgcgcgatcc ttgtatttat
      541 acttaaggga taactctggc gtcaaaaaac gccgccagcc cttgtgccgc aagggtttga
      601 gtgtgatttg cctgaaaatg gttttggaag tattctgtcg ggagtggtcg cagaaaaaag
      661 cgacccccgc aactgcgcta acagttcggg ggtgtgacca cctgtaggaa ttcgaatttg
      721 gacacgacaa cacaggtgat atggcaatga taacacgtca aatgagccat cgcccagcat
      781 ggggcggtgt gcatgcaaaa tcctgaactc cagaacctaa ctgactactc cccctcagat
      841 gcgccgtggg acgctcacag aagcgtttct gacgacgtgg gagggattta cctgcttgcg
      901 gctgaatatg agcgctacgg ggcgcgtatg gcctcctgtg gcggtttact gaggtttggg
      961 tggtctaccc tcaaagaaac cggagaaacg cgcctgaggc tgcgtgaggc gcatttctgc
     1021 cgtgtccggc actgtcctgt ctgccagtgg aggcgctccc tgatgtggca agcccgtttc
     1081 taccagtccc tgccgcgtat cgtggcggat taccccgatt cccgctggat gtttctgacc
     1141 ctgaccgtgc gcaactgcgc gatcgaggag ctgggcgaga cgctgagccg gatgaacacg
     1201 gctttccagc gactgaagga ccgtaaagag ttccgaccag ttcagggctg gatacgcacc
     1261 acggaagtca cccgcggcag tgacggcagc gcacacccgc acttccacac cctgatgatg
     1321 gttccgccgg gcatgcttaa cgggaagagt tacgtcaggc atgaacgctg ggttgagctg
     1381 tggcgtgagt gcctgcgggt cagttacgat ccgaatgtcg atgtccgggc agtgaaaccc
     1441 cgcaagccga aggacggcga atcgctggcc tgcgcgaccg ccgaactggt gcgcggcgca
     1501 gtggccgaaa ccctgaaata ttccacgaag ccggccgaca tggtggccga tcctaaatgg
     1561 ttcctcgaac tgacccgcca gacgcacaag cgccgctttg tggcgaccgg cggcgcactc
     1621 aaagacgtgc tgaaactcga tcaggaaacc gacgccgaca tggtgatcgg ggatgatatt
     1681 tccgagggcg atgatgacgg ttcccgcatc gcgttcgagt ggaagaccga ggtcaaaaag
     1741 taccggcgtt cgccgacgaa agataaaacc gaatcagact aacagggtgt cggggctgcg
     1801 ccctgaccat gagggctttg ggcatccgtc accttggtgg cggtgtacca aagtcacatc
     1861 ttgtccgatt gattttactc cgatgcagga tagggctaac gccgcaaagt gacgtcactc
     1921 gattactgag ttcggattcc gaacctgggt ttttcttccg gtaattttcc ggaaggcgcg
     1981 cttagtagtt tctcatctgg cgatgagaaa cgcgcggtgg ggcaagccca cgaaaaacaa
     2041 aaactgataa cggacaag
//
