LOCUS       NZ_CP102759             4657 bp    DNA     circular CON 07-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky isolate
            AH19MCS11 plasmid pYUAHMCS11-3, complete sequence.
ACCESSION   NZ_CP102759
VERSION     NZ_CP102759.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30275503
            Assembly: GCF_024722475.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4657)
  AUTHORS   Wang,J.
  TITLE     whole genome sequences of Salmonella enterica serovar Kentucky
            AH19MCS11
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4657)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2022) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/06/2023 05:22:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,890
            CDSs (total)                      :: 4,768
            Genes (coding)                    :: 4,622
            CDSs (with protein)               :: 4,622
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 49 of 146
            Pseudo Genes (incomplete)         :: 103 of 146
            Pseudo Genes (internal stop)      :: 22 of 146
            Pseudo Genes (multiple problems)  :: 26 of 146
            Pseudo Genes (short protein)      :: 1 of 146
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP102759.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /serovar="Kentucky"
                     /isolate="AH19MCS11"
                     /isolation_source="chicken meat products"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pYUAHMCS11-3"
                     /geo_loc_name="China: Anhui"
                     /lat_lon="30.56 N 118.45 E"
                     /collection_date="2019"
                     /collected_by="Jing Wang"
     gene            239..718
                     /locus_tag="NWA04_RS24360"
     CDS             239..718
                     /locus_tag="NWA04_RS24360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001050742.1"
                     /translation="MNLLLPRDIVEAVLNDKKTKNARVAKCDGSEFFLELPSMNADFPA
                     GKIILKLGDSGFYNKRTKSLEGAYGLRHIWDKHRVEIGATSAEDIVIFLESILLAGAEV
                     LIDPKKGQNKAIVVESGTGMMILELKKPNGEDPYYSIITAYDRKSHPGTKLHTLI"
                     /name="hypothetical protein"
     gene            1965..2288
                     /locus_tag="NWA04_RS24365"
     CDS             1965..2288
                     /locus_tag="NWA04_RS24365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001347450.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSL
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2497..>2931
                     /locus_tag="NWA04_RS24370"
                     /pseudo=""
     CDS             2497..>2931
                     /locus_tag="NWA04_RS24370"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2966..3451
                     /locus_tag="NWA04_RS24375"
     CDS             2966..3451
                     /locus_tag="NWA04_RS24375"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_001086854.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSAAMSQRTKGMLRMVSQTWLTIVLVSTLLTASGASILWWQGQQIL
                     DNYTTIREQKRTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            3455..3670
                     /locus_tag="NWA04_RS24380"
     CDS             3455..3670
                     /locus_tag="NWA04_RS24380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137421.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3869..4636)
                     /locus_tag="NWA04_RS24385"
     CDS             complement(3869..4636)
                     /locus_tag="NWA04_RS24385"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_196042596.1"
                     /translation="MQPRELLMLSMYILVQAPVLTGLSKNQTESLTTNNKRGRRTAFYR
                     IKKHLQHDFYRIDSIKNEIHSPIKGFYMKDMKAVVVFTGKDLNIMRTEGGSGYWHARTD
                     RLNDADYLIAVRNRRETWAVKDLEHGTAFLIAKITGCFKSPDYDDRNVITFDEYAEIHT
                     PKAWKMLTDGQRYPVAYLSAQEAFLRIGVTPEQLEWKKFHPSSPSVPNTVIPGLAEEKT
                     EKLSLNEAIERAKKDISNATGIDSSAITISIKI"
                     /name="hypothetical protein"
     Typing          1678..1861
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="85.561"
                     /coverage="86.0"
                     /evalue="2.7100000000000003e-47"
     Typing          complement(1219..1695)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.083"
                     /coverage="92.0"
                     /evalue="3.51e-174"
     Typing          2279..3774
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.583"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttatcaggcg cagaatgcgc ggtttagcgg ggagtttact gccgatttta ccgggctaac
       61 gccgctttca cgctgaaccc gtccggagcg gtgcgggcaa ggaatgttat ggtaaataca
      121 actggttttt tctatcaaga tttactggaa attgctcatt acgtcagtgt tagaatcagc
      181 ccttcaaaaa gggatttaac gcctaaacat aatagtgaag gctatagagg tgtagtttgt
      241 gaacttgtta cttccacgcg atatagttga agctgttctt aatgataaga aaacaaaaaa
      301 tgcacgagtg gctaagtgtg atggaagtga attttttcta gaactgccaa gcatgaatgc
      361 agactttccc gcagggaaaa tcatcctcaa gctaggagat tccggttttt acaacaaaag
      421 gacaaaaagt ctcgagggag cctatggcct taggcatata tgggacaagc atcgtgtcga
      481 gataggagct acttccgctg aggatattgt catctttttg gagagcatat tattagctgg
      541 ggcagaagtg ctcatagatc ctaaaaaagg ccaaaacaaa gcgattgttg tagagtcagg
      601 aacggggatg atgatactag aattgaaaaa accaaacggc gaagacccgt actacagcat
      661 cattactgct tatgatagga agagccatcc aggtacaaaa cttcataccc taatatgaaa
      721 aaagccggct aaatagccga cttcttcgta atagtgttgt tcgtggcatt cccttagcat
      781 ttcggttcgg gacaggtctt tgaccttaac aacgcattgt cgaaatctgg tttccgacaa
      841 gtagcctaca aatatgtaac caatccagag ttcaggttac ataccaagcc cttctacaca
      901 tacagaatac aactctatca ctgctcatct ttttgcaaaa agtgctattt tggtgttcag
      961 tggaaaccaa aacgaagcca aatcactggt aaacggtcag atctccttgt gatcgtttta
     1021 ctctcgtcgt aatctctctc cctgtaaacg aaaaaaccac ccggcaaggt ggtttttcga
     1081 aggttcagta aaccggcaag tttctgaacc gtggtaacag tcttgtgcga gacatgtcac
     1141 caaatactgt ccttccagtg tagcctcact aaggcctcca cttcaagaac tctcgataca
     1201 tctctcgcac atcctgctta ccagtggccg ctgccagtgg cgttaagtcg tgtcttttcg
     1261 ggttggactc aagacgatag ttaccggata aggcgcagcg gtcggactga acggggggtt
     1321 cgtgcataca gtccagcttg gagcgaactg cctacccgga actgagtgtc aggcgtggaa
     1381 tgagataaac gcggccataa cagcggaatg acaccggtaa accgaaaggc aggaacagga
     1441 gagcgcacga gggagccacc agggggaaac gcctggtatc tttatagtcc tgtcgggttt
     1501 cgccaccact gatttgagcg tcagatttcg tgatgcttgt caggggggcg gagcctatgg
     1561 aaaaacggca acgccggatc cttttcccct tccttcttga tttgagcgct atttatctcg
     1621 tcattcttga gcaggtaacg cccgccgcag tctcacggca ggagcgtagc gaccgagtga
     1681 gcgaggaggc gtcatttcat cgtctccagc atttcgcact tacgccccac agctgaattt
     1741 tttacctgcc acatgaagca cttccctgaa tttccacttc gatttaccat actaagccag
     1801 tatacactcc gctagcgcta cgtgactggt tcagggctgc gccccgaaac ccgctaaaac
     1861 cactgacgcg cctgcggctt gtccaacacc gcgccgaccg ggaaaagatt tcccgcccgt
     1921 ctcggcgtta tcaggaggcc ggattggcag acaaacgcag caaaatgctc acgatgtggg
     1981 tgaccgaaga tgagcaccgc cgtctgctgg agcgctgcga cggtaaacag cttgcagcct
     2041 ggatgcgcca gacgtgcctg gacgagaaac ccgcccgcgc cggcaagctt ccctcgctct
     2101 cgccggcgct gcttcgtcag cttgccggca tggggaacaa cctcaaccag attgcccggc
     2161 aggttaacgc cggtggtggc agcgggcacg accgcgtgca ggtcgtcgcc gcgctgatgg
     2221 ccatagatgc cggactcgag cggctgcggc atgccgtgct ggaaaagggt gcagacgatg
     2281 atcgttaagt ttcacccgcg agggcgcggc ggtggcgccg gtccggtgga ttatctgctg
     2341 gggaaagacc gacagcgcga cggcgccacc gttctgcagg ggaagccgga agaagtcagg
     2401 gagcttatcg acgcctcgcc ctacgcaaaa aagtacacat ccggcgtctt gtcctttgcc
     2461 gaaaaggatt taccgcccgg gcagcgcgaa aagctgatgg cgagctttga acgggttctg
     2521 atgcccggac tcgataaaga ccagtacagc gtgctgtggg ttgagcacca ggataagggg
     2581 cggctggagc tgaacttcct gatcccgaac acggagctgc tgaccggcaa gcgtctccag
     2641 ccgtattacg accgcgccga ccgtccgcgc attgatgcct ggcagaccat cgtgaacggc
     2701 aggctggggc tgcatgaccc gaacgcgcct gaaaaccggc gggtgctggt cacgccgtcc
     2761 gcgctgccgg aaacgaagca ggaagccgct caggcaatta cacggggttt actggcctta
     2821 gcctcgtccg gggagctgaa aacccgccag gacgtcactg aggcgctgga aagcgcaggt
     2881 tttgaggtgg tacgcaccac aaaaagcagc atcagcattg ccgacccgga cggggggcga
     2941 aacatccgac tgaagggagc catctatgaa cagtctttta acgctggcga aggacttaga
     3001 gcagaaatcg aaagcgcagc agcagagtac cggcgagatg ctgaaagccg cattcagcga
     3061 gcacgagaag tctgtcagag cggaactgag cgaaagcgag aagagaatca gcgccgccat
     3121 cctcgaccac gacaggaagc tgtccgctgc catgagccag cgcacgaaag gtatgctgcg
     3181 gatggtcagc cagacgtggc tgaccatcgt cttggtgtct acactgctga cagcatcggg
     3241 cgcaagtatt ctgtggtggc aggggcagca gatactcgac aattacacga ccatccggga
     3301 gcagaagcgc acgcaggcca tgctgtccga gaggaacagc ggtgtgcagc tctcgacctg
     3361 cggagagcag agacgccgct gcgtgagggt gaacccggaa gcgggacggt tcggagagga
     3421 ttcgagctgg atgatactgg cggggaaata gcacatgacg gagctggaaa aacagttgct
     3481 gagcgcatta gagcagctac agcaggacta ctcgaaaagg ctggacgagt gggagaacgc
     3541 cttcgcggaa tggcggacga tgtctggtct tatgcaacgg gagaacgcgg cgctgagcga
     3601 gcgcgtcacg ggcttgagca ggcaggtgca gagtttgagc gagcagctgc gccggttgtc
     3661 acaaggctga acgtgataga ggcacatcgt gagcaggaac gggcggcgca gcatcagaaa
     3721 gcgctggagc tggaacgatc tcagcgacag cgaacgtaca acggtccgtc actttgaatc
     3781 tgtgcgccgg aaaagcatgg gcttgctgtt tctggcgtac aggttcagtt ctagaacatg
     3841 aggctgctat cttgttgttc acgcttcatc agatcttgat gcttattgtt atggctgagc
     3901 tatcaatccc tgttgcgttg ctaatatcct ttttggctct ttcaattgcc tcgttaaggg
     3961 agagtttttc tgttttctct tcagccagac caggaatcac tgtattagga accgatgggg
     4021 atgaaggatg gaatttcttc cattccagtt gttccggtgt taccccaata cgtaaaaaag
     4081 cttcctgtgc gctcaggtaa gcaaccggat agcgctgacc atcggttagc attttccatg
     4141 cttttggcgt gtgaatttct gcgtattcat caaaggttat gacgttcctg tcgtcgtaat
     4201 cagggctttt aaaacacccg gtaattttgg cgatcaggaa tgctgtgccg tgttccaggt
     4261 cttttactgc ccacgtttcc cttctgtttc ttactgctat gaggtaatcg gcatcgttga
     4321 gcctgtctgt tctggcatgc cagtagcctg accccccctc agttctcatt atgttcaaat
     4381 ccttcccggt aaaaaccaca acagctttca tatctttcat atagaaaccc ttaataggtg
     4441 agtgaatttc attttttatg gaatctatac gataaaaatc gtgttgtaaa tgttttttta
     4501 tgcgataaaa tgcagtcctc ctacctcttt tattgttagt ggtaaggctt tctgtttggt
     4561 tttttgataa accggttaaa acaggggctt ggacgaggat atacattgaa agcatgagca
     4621 attcacgtgg ctgcatggct atgcagccac gtgaaat
//
