LOCUS       NZ_CP102744             3374 bp    DNA     circular CON 07-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain AH19MCS8
            plasmid pYUAHMCS8-5, complete sequence.
ACCESSION   NZ_CP102744
VERSION     NZ_CP102744.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30275502
            Assembly: GCF_024722455.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3374)
  AUTHORS   Wang,J.
  TITLE     whole genome sequences of Salmonella enterica serovar Kentucky
            AH19MCS8
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3374)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2022) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/06/2023 04:45:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,867
            CDSs (total)                      :: 4,743
            Genes (coding)                    :: 4,598
            CDSs (with protein)               :: 4,598
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 49 of 145
            Pseudo Genes (incomplete)         :: 102 of 145
            Pseudo Genes (internal stop)      :: 22 of 145
            Pseudo Genes (multiple problems)  :: 26 of 145
            Pseudo Genes (short protein)      :: 1 of 145
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP102744.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3374
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="AH19MCS8"
                     /serovar="Kentucky"
                     /isolation_source="chicken meat products"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pYUAHMCS8-5"
                     /geo_loc_name="China: Anhui"
                     /lat_lon="30.56 N 118.45 E"
                     /collection_date="2019"
                     /collected_by="Jing Wang"
     gene            complement(1095..1328)
                     /locus_tag="NWA03_RS24265"
     CDS             complement(1095..1328)
                     /locus_tag="NWA03_RS24265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137389.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1335..1895)
                     /locus_tag="NWA03_RS24270"
     CDS             complement(1335..1895)
                     /locus_tag="NWA03_RS24270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067487.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(<1924..2583)
                     /locus_tag="NWA03_RS24275"
                     /pseudo=""
     CDS             complement(<1924..2583)
                     /locus_tag="NWA03_RS24275"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2573..2896)
                     /locus_tag="NWA03_RS24280"
     CDS             complement(2573..2896)
                     /locus_tag="NWA03_RS24280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001696562.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     APPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2960..3151
                     /locus_tag="NWA03_RS24285"
     CDS             2960..3151
                     /locus_tag="NWA03_RS24285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_062914769.1"
                     /translation="MTKQEKTALNMARFIRNQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(3233..3313)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="86.585"
                     /coverage="93.0"
                     /evalue="4.04e-16"
     Typing          complement(1013..2583)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.628"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcgcccgata aacaacacac acgcggacac tggcacaggc gcgtaagtgc acaatgcttg
       61 cctctgtgac tcttccgctt cctcgcccac tcgctcacta cgttcggtcg ctggggctgc
      121 ggcgagcggt gggatcactc tcgttgtgat gcagatccgt tttttttttt tgcactggag
      181 ttatcaggag tagcggtgca catgggatcg tgcgatatgc tggatggtgg aaggtcggag
      241 ggaacggcaa caactcaccc ctcccagtga agggacgggt agtttgccgc tctcgatatg
      301 ccggacggag ccaaggccat cgatcacggg gcgcgtcagt ggaagaaccc gcgcctgcgt
      361 gacgtatgcg tcttcgccgc accatctcac ccgtcacgcc accacatacc gggaactgcc
      421 gccaaggtct aactcaacca atctagccgc gctacatacg gtttttgtgg caactcatca
      481 ggtgtccgct gtcgatgaaa ctctctgcgc cggtagcgga actctcacgc gtgcggtcgc
      541 cgtcgtcaca gctcccccaa ccgcaaacga ttctcgcaaa tacgcaagta tctgcaaaaa
      601 caggtttttt tcggggttcc tgggagactg tgctgttgaa aaactcttga agaatacaga
      661 aggctcatgc aaactgaatg aactggtttc tgttgtggat ctcaacagtt tccacaggaa
      721 cattgaggag gtcagagacc tcaatgaacc cgaaacagct cgccttcctg gcgagctgtt
      781 ttcgttctac gcccaccgac gaaagatcgc aagtgcaata acgagatttt tcacgtcttt
      841 acgctcaaaa agtaaaaaaa ccatgttttc ccctggctga atccccaaaa acgcgtgaaa
      901 tgcgttttca ggatgttgca tagctatgca caaatacggc acacgatttg tttcgctcgc
      961 cccagccgtc gaacgggtca aaatggcaag atttcgtcac ttctccggtc acatctccat
     1021 tgatggccca ctccgaaccc gtgccgcgcg ttcctgtacc tcatgtctgt accgggcacg
     1081 ctcctgttca tcccttagct gttgttcgcg ataaataacc gactcaagcg atccacttgc
     1141 ccggctaatc tctgcacctg ctgactcaat atcacgacgc gctcgttcag tatcgcgttg
     1201 ttccgttgcg taacctcgtg catcttctgc aattccgcga aggcgctctc ccactcgttc
     1261 agccgccgca tatagtcctg ttgcaaatgc tctaaggcgt tcagcaaatg cccttccagt
     1321 tccgtcatac tcgtttactc cctgaccagc ctcacggcgt tcttgtcgcc caccgtccag
     1381 gtgttttccc ctttcacccc gtccggcaac accagaaatt tcccgttctc gccattgacg
     1441 aacgtcaccc cccaggtttt tgcctcgagt ttcgccagcg tgttttcctg ctctctgata
     1501 gtcaggatat ttttcgcaat cttgctttcc tgccactcca tcagccccca gcaccccagg
     1561 aaaatcccgc ccgtgacgct gagcgcggtc agcgccggaa acagtatccg ccctttgatc
     1621 acccgccaga gcagtttttt ctgctgccgg gacagttcgg cctctgtggt gctgaactgc
     1681 atgctcacgg tggtgctcag cgtatccagt tgctttttca cggatgttgt atgttcgctg
     1741 atagcgtctc tgattttctg cctgtttaag ctcaatgcct tgtctacaga ctcttcgagc
     1801 ttcctgaact cgctgttcag catgttctcg gtagaagcgg ctcgctcttt cagtttcttc
     1861 tcgaagtctg ttcccatttg taaaagattg ctcatacagc gcccccttta gcctgagatt
     1921 ccgccccccc tccgggtcgg caatactgat gctgcttttg gttgtcctca ccacctcaaa
     1981 acctgccgct gtaagcgcct ctgtgacatc ctgacgcgtt tttattgctc cggcatggta
     2041 aagagcctca agaccccgtg taatcgcttc tgcggcctcc tgtttcgctt ttggcagatt
     2101 atttggcgtg acaagcgtcc gtctgttctc cggtgcgttc gggtcacgca gcccgtaatg
     2161 atgattaacc agcgtctgcc aggcatttat cctcggcctg tccgcacggt cgtagtacgg
     2221 ctggaggcgc ttaccgctct gtagctccat gttcgggatg acaaaattca gttcgagccg
     2281 ccccttatcc tggtgttcca cccagagaat gctgtactgg tctttttcga gaccgggcat
     2341 aagaacacgc tcaaagctcg tcatcactct ttcgcgttca cccggtggta gctccttctc
     2401 cgcgaacgac agaacgcctg acgtgtattt cttcgaaaat ggcgtggaat caatgagttc
     2461 ccgcacttct tccgggttac cccggagcac cgttgcgcct tcgcggttac gctcccgccc
     2521 cagcaggtaa tcgaccgggc cacttccacc gcctttcccc ctggcatgaa atttaactat
     2581 catcccgtac cccctgttcc ctgacagcct gccgcaactg gcgcaattca ccctcgatgg
     2641 ccatcagtgc ggccaccaca tgaacccggt caatcgaaga ccactggccg ctgttcacct
     2701 tccgggctgt ctggttcagg ttgttcccga tggcagccag atgccgcagc aatggcggtg
     2761 ccagtgtcgg cagttttcct gtgcgtgcaa ccggctcccc cagacagacc cgccgcatcc
     2821 attccgccag tcgtttaccc tcgcagcgtt ccagtaaccg ggcgtgctcc tcatcggtaa
     2881 cccgtatcgt gagcatcttc tcgcgtttca tcggtatcat tccccctaac aaatccccca
     2941 tacaaggagc cttaagacca tgaccaaaca ggaaaaaaca gcccttaaca tggctcgctt
     3001 tatcagaaac cagacgctaa ccctgctgga aaaactcaac gatctggacg cggacgaaca
     3061 ggcagacatc tgcgaatcac ttcacgacca cgccgacgaa ctctaccgca gttgcctcgc
     3121 acgcttcggc gatgacggtg aaagcaactg aaacatgcag ctcccggaga cgttcacagc
     3181 ttgcctgtga gcggatgccg ggagcagaca agcccgccag ggcgcgtcag tgcgggtgtc
     3241 ggggcgcagc cctgacccag ttcacagagc gatagcgatg tgtatactgg ctttcctcat
     3301 tttgcatcgg tgcagagtgg atgggaagtg caccatgtca ggagtaaaaa gccgcacaga
     3361 tgcgtaaaaa cagc
//
