LOCUS       NZ_CP102743             3428 bp    DNA     circular CON 07-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain AH19MCS8
            plasmid pYUAHMCS8-4, complete sequence.
ACCESSION   NZ_CP102743
VERSION     NZ_CP102743.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30275502
            Assembly: GCF_024722455.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3428)
  AUTHORS   Wang,J.
  TITLE     whole genome sequences of Salmonella enterica serovar Kentucky
            AH19MCS8
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3428)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2022) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/06/2023 04:45:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,867
            CDSs (total)                      :: 4,743
            Genes (coding)                    :: 4,598
            CDSs (with protein)               :: 4,598
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 49 of 145
            Pseudo Genes (incomplete)         :: 102 of 145
            Pseudo Genes (internal stop)      :: 22 of 145
            Pseudo Genes (multiple problems)  :: 26 of 145
            Pseudo Genes (short protein)      :: 1 of 145
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP102743.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3428
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="AH19MCS8"
                     /serovar="Kentucky"
                     /isolation_source="chicken meat products"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pYUAHMCS8-4"
                     /geo_loc_name="China: Anhui"
                     /lat_lon="30.56 N 118.45 E"
                     /collection_date="2019"
                     /collected_by="Jing Wang"
     gene            complement(533..1230)
                     /locus_tag="NWA03_RS24245"
     CDS             complement(join(533..981,981..1230))
                     /locus_tag="NWA03_RS24245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558153.1"
                     /ribosomal_slippage=""
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
                     /protein_id="WP_094106546.1"
                     /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTY
                     TASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHFKKLRPQSVTSRIQPGSDVIV
                     CAEMDEQWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVW
                     MTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVI
                     GHYLNIKHYQ"
                     /name="IS1 family transposase"
     gene            2119..>2214
                     /locus_tag="NWA03_RS24250"
                     /pseudo=""
     CDS             2119..>2214
                     /locus_tag="NWA03_RS24250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /name="plasmid mobilization relaxosome protein MobC"
     gene            complement(2779..2967)
                     /locus_tag="NWA03_RS24255"
     CDS             complement(2779..2967)
                     /locus_tag="NWA03_RS24255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_024157493.1"
                     /translation="MNRQESAVLNIAKFIRAQTLLLLERIDLLDFDDEATDCEQLHEQA
                     EALYRKLSARLESDITA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(3159..3422)
                     /locus_tag="NWA03_RS24260"
     CDS             complement(3159..3422)
                     /locus_tag="NWA03_RS24260"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_138627904.1"
                     /translation="MPLEQAAFLFSGVGGMLLTEMEISNTRNITLIARRLAWINAKRTH
                     IDIPSFAELLFSGQKALFFEQYNYFHSRRYTTAGTSKPPDLP"
                     /name="hypothetical protein"
     Typing          1929..2013
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.954"
                     /coverage="100.0"
                     /evalue="1.43e-25"
ORIGIN
        1 catcaaggga aactacgtct tacgattcgt tttgaaccgg gacgctttgt tgctgcgaat
       61 cactaaccag ataatccacg ttttgtgagt gggtttaggt taaggcttca atagaacaat
      121 aataacgtta agtgattagg gcaacctgtg attgctaaaa tgatgaagtc ttcacatcat
      181 ttcggtgaag gcgatatgtg ttacaccacg tattgagaga cctgcatgcc ctttacaggt
      241 gaacgggaac gggaatagag cggcgattta gccagagatg ggtttcataa cactgtaatt
      301 catatcacaa ttattataac tggcggtatt tttttaacct ttgcaattcg ttttatctga
      361 tgtttatgat aattttcaaa aagttggccc cctgacatca ccgggagcca aaaaaaatac
      421 accagttatt attgtggcta tattatttca tgagtaaaca aatatgtcag gcgtatattt
      481 gtttactcaa attgcttgtt ttttagtcat cgtgatgggt aatgactcca acttactgat
      541 agtgttttat gttcagataa tgcccgatga ccttgtcatg cagctccacc gattttgaga
      601 acgacagtga cttccgtccc agccttgcca gatgttgtct cagattcagg ttatgtcgct
      661 caatgcgctg cgtatatcgc ttgctgataa cgtgcagctt tcccttcagg cgtgattcat
      721 acagcggcca gccatccgtc atccatacca cgacctcaaa ggccgacagc aggctcagaa
      781 gacgctccag tgtggccaga gtgcgttcac cgaagacgtg cgccacaacc gtcctccgta
      841 tcctgtcata cgcgtaaaac agccagcgct gacgtgattt agcaccgacg tagccccact
      901 gttcgtccat ttcagcgcag acaatcacat cactgcccgg ttgtatgcgc gaggttaccg
      961 actgcggcct gagtttttta agtgacgtaa aaccgtgttg aggccaacgc ccataatgcg
     1021 tgcactggcg cgacatccga cgccattcat ggccatatca atgattttct ggtgcgtacc
     1081 gggctgagag gcggtgtaag tgaactgtag ttgccatgtt ttacggcaat gagagcagag
     1141 atagcgctga tgtccggcag tgcttttgcc gttacgcacc acgccttcag tagcggagca
     1201 ggaaggacat ctgatggaaa tggaagccac gcaagcacct taaaatcacc atcatacact
     1261 aaatcagtaa gttggcagca ttacccggat ttgagagtcg caaacccata ttagggcaaa
     1321 gaaagcctaa tgcccccgtg gtgggtacac cagaaaacgg ggagcgaagc gaccagcatc
     1381 aggccgttcg tatgctgctt cgattttgtg ggtgttgcgc cagaccttgg caatcacgct
     1441 tcaccgcaac cgctgccttc actctcactt tatcaggtac gttattggtt aacgtgagac
     1501 cgggtagagc cagcttcttt cccgagctgg tcaggttccc accgcttgcc tgtttatcct
     1561 gccggagtcc ggggcgtaga cctgagagtc aaggtgcaga tatgggttta atgtcgttga
     1621 atggtattaa gctggtagtg acattcctag ccagccctgc taggatttga ttgcggtctg
     1681 atccgagcag gtatctgcac gaattagagt actcaagccc tgtgattctg tcacggggct
     1741 tttgtacatc tagagccaga aaaatcatta tcactcagtc agatcaccgc aacgcccgcc
     1801 acagcttcat gaccgaacgt agtgagcgaa tgagcgagga ggcgtcattt tcaccgtccg
     1861 cccatcattc tgcttatgct tcgaagccgc attttcctct gccacatagc ccgatttctg
     1921 tcaatttccg cacagtgtta aaatagataa gccagtatac actccgctag cgctatgtga
     1981 ctggttcagg gctgcgcccc gaaacccgcc aaaagcctga cgcgcctgcg gcttgtccaa
     2041 ccccgcgccg accgggaaag ggtttcccgc ccgtcacggc gttatcagga gactggtttg
     2101 tccgagaaac ggaacaagat actcaccatg tgggtgacgg aggatgagta ccggctactg
     2161 ctggaacgct gcgggggtac acagctttct gcatgggtgc gcccgtctgc tatgtctgtt
     2221 cctcctagtt ttggtgggtg cttatatctc tgctcaatgg cataacatgt cactattaac
     2281 cgcgatgcta aagcgggctg tttttcacag tattaccggc tcccgtgccg gttttttttc
     2341 ttaccggaag ggacttcgtg tttattgatg ttctgatttt cggagggtgt actgatcgcc
     2401 ttgcaaggga cacgatgagg attgtagccc gcgaggaagg aaagacttac gacgaggtac
     2461 tttctgacat cagggaaggt ggggcagatg agctgaccca gatacatttc tggcgtgtcg
     2521 ttagtgcatt atatcccggg gcatttaacc gtattgatta cctctctgag tctcggaaat
     2581 accgtctctg gttatcctga tttttaatct cgtcactgct tgcttacagt tccagtctgt
     2641 attgtctgca tttttctttc atactgagtg cctcacgacc cgtaataaat tccgtgtccg
     2701 ttcatccttg agcgacgact ggaggatgaa gatctctcaa aagatgatgt ggatgccatg
     2761 atgcaggcga cggaaaggct aagccgttat gtctgattcc agtcgggcgc tgagcttccg
     2821 gtaaagcgct tcggcctgct catgcagctg ttcgcagtct gtcgcttcgt catcgaagtc
     2881 gagcaggtca attctttcca gcaggaggag tgtctgggcg cggataaatt tagctatgtt
     2941 gagaacggcg gattcctggc ggttcatgtg tgttttcctg tgtcttgtga tgattttgat
     3001 gtgaaaacag gatgccgtca ttctggtgca tagtcatgca tggcgttaaa atttacctgg
     3061 cacgtttctg gcggcttttc gggtggtttg ttacctgttt taccgtaccg ccgtcagaaa
     3121 cgccctgagg gcgcctgagg cggtgctgat aacggatgtt atggtaaatc cggtggcttt
     3181 gacgtgcctg ccgttgtgta ccgtcgtgag tgaaaataat tatattgttc gaagaacagc
     3241 gctttttggc cggagaaaag cagttctgca aacgatggta tatcgatatg agttcttttg
     3301 gcattaatcc aggcaagacg ccgggcaata agcgtaatat tccgggtgtt acttatttcc
     3361 atttctgtca acagcatccc ccccacgccg gagaataaaa aagccgcctg ttccagcggc
     3421 aagcccta
//
