LOCUS       NZ_CP102742             4197 bp    DNA     circular CON 07-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain AH19MCS8
            plasmid pYUAHMCS8-3, complete sequence.
ACCESSION   NZ_CP102742
VERSION     NZ_CP102742.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30275502
            Assembly: GCF_024722455.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4197)
  AUTHORS   Wang,J.
  TITLE     whole genome sequences of Salmonella enterica serovar Kentucky
            AH19MCS8
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4197)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2022) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/06/2023 04:45:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,867
            CDSs (total)                      :: 4,743
            Genes (coding)                    :: 4,598
            CDSs (with protein)               :: 4,598
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 49 of 145
            Pseudo Genes (incomplete)         :: 102 of 145
            Pseudo Genes (internal stop)      :: 22 of 145
            Pseudo Genes (multiple problems)  :: 26 of 145
            Pseudo Genes (short protein)      :: 1 of 145
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP102742.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4197
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="AH19MCS8"
                     /serovar="Kentucky"
                     /isolation_source="chicken meat products"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pYUAHMCS8-3"
                     /geo_loc_name="China: Anhui"
                     /lat_lon="30.56 N 118.45 E"
                     /collection_date="2019"
                     /collected_by="Jing Wang"
     gene            221..1240
                     /locus_tag="NWA03_RS24230"
     CDS             221..1240
                     /locus_tag="NWA03_RS24230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072650579.1"
                     /translation="MSAALQYFEENLPRRPYHTNDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDSSVKA
                     LKYAAAIERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASA
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSP
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSANQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAEAVGVSRWTVRRWMDSSVEWLLSKQIIKI"
                     /name="replication initiation protein"
     gene            complement(1501..1947)
                     /locus_tag="NWA03_RS24235"
     CDS             complement(1501..1947)
                     /locus_tag="NWA03_RS24235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_000184723.1"
                     /translation="MTNREEWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWERRGKELLTKDSA"
                     /name="conjugal transfer protein TraD"
     gene            2119..3978
                     /locus_tag="NWA03_RS24240"
     CDS             2119..3978
                     /locus_tag="NWA03_RS24240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000179380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_223545370.1"
                     /translation="MASYHCTVKTGAKGGALKHADYISRSGEYKNYKSREDLEFSSSGN
                     MPSWAKENPTELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPEQGGAKKARF
                     GETQQERKAALVALRSRWADVQNEHLARHGHESRVDHRSLKEQGINRTPEVHLGPVQAA
                     SLNGEQIVAIQERRNAERELKTARDAANAIQPEQEQKQKIKAVEPVRSARLMDEYRDVA
                     RKVITLETRQNESQELALKHHLFMKAEAKEQELAKLKEQLKKMDEQRSVYKNKIDEKKQ
                     NITALVEQKKSLERSFIGLFKGGMKRELEEQIKTQVSQLEKAEHEMKQLDENYQQLQMQ
                     ADNEQKNFSHSPEYQYSEAVLSGIPRSILKLQFALLPSESTIAFNKNALDVEQRKEAAI
                     AAELCLSEDERRQIRREIQDVLNGDACEGQQTETLQQKRPEKDAHIEWEREESPQVVIP
                     KTYVFFSACRGVKTEIRPFESCDDAIEWGLVECELHERFKRDLIVYRVDAELIGKGDDT
                     VMKNAERIDLTDKLEGWNQQTHIEKESLFERVQQRSQDDELEM"
                     /name="MobA/MobL family protein"
     Typing          222..997
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.044"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          2120..3975
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.738"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gttttttgcg tcagaacgcg tctgagagcg ttttaagggg tgcgtacaac gggagttatg
       61 gtaaatggat cggttttgcg ggaagactcg acaggttttg tcgttggggg tagtgtaagc
      121 gactgaaaaa caaacgcccc tgaaattcgt gtctctccgc caagattgtc acgaaaatac
      181 aggggcgtgt gggtcgtaac acacggagga atcctaacac atgagcgccg cgcttcaata
      241 cttcgaagaa aatttacccc gccgtcccta tcacacgaat gatctcgctt ttggtcttcg
      301 catctccggc aaagggcgtg cgctgcttgc gcggtacatc cagcagaacc agcctcatgc
      361 gcagttctgg ctggtttttg acgttgaccg cgagggggcc gcgattgact ggagcgaccg
      421 gaacgccccc gcgccgaaca tcaccgtaaa aaatcctgtg aacggtcatg ctcacctgct
      481 ctacgcactc aatatcgccg tgagaaccgc gccggacagc tcggttaagg cgctgaaata
      541 tgccgccgcg attgaacgtt cgctgtgtga gaaactttgt gctgatgtga actacagcgg
      601 actgatttgc aaaaatccgt tccacctgga atggcaggtg atggagtggc gcgaggaagc
      661 ctataccctc gatgaactgg cagattatct cgatttgagc gcctcagcgc gtcgtagcat
      721 cgataaacat tacgggatgg ggcgaaactg ccacctgttt gaaatgacgc gcaaatgggc
      781 ttacagggcg attcgtcagg gctggccagc attctcacag tggcttgatg ccgtgatcca
      841 gcgtgtcgaa atgtataacg catcgcttcc cgttccgctt tcaccggctg aatgtcgggc
      901 tattggcaag agcattgcga aatacacgca caggaacttc acgccagaaa ctttcgcaca
      961 gtatgtggct gatacgcaca cgccagaaat tcaagccgca cgaggtcgca agggcggtaa
     1021 ggccaattca tcagcaaatc agtcggacaa agggaaaaaa agcgccgctg ttcgatggac
     1081 tgctaacgat gacaagcgtc gtagggcgct tgatatgtac atcttgggag cctcaacaga
     1141 agatattgca gaggcggttg gtgttagccg ttggactgtt cgacgctgga tggatagctc
     1201 tgtagaatgg ctactgagta aacaaataat taaaatttaa ttaacaaaaa gaacacatcc
     1261 ccccccttgt tttgttattt ttttgttaat tttgggtgca tgaacaagcc tatatcagat
     1321 aacagcgtct ttcggcgtct ttttgagccg cgggctttcc ggcggttttc tcctgtcagc
     1381 ccagcaatgg tgcggcttac cgcatgattg ctgtggttgt gctcgccgca gtctcatgac
     1441 cgagcgtagc gagcgaatga gcgaggaagc accagggaac cggaacgtaa acggaggctc
     1501 ttacgcactg tctttggtga gtagctcctt cccgcgtctt tcccattcct gccattttgg
     1561 atggttgcgc ggtagctctg cgattcctgc gagtgcgcct accagttcgg cagcactaaa
     1621 ctttggtttt ccggttttgc tgtccaccag tcctgccaca atcatgaggc ctgcggcctt
     1681 gtagagttca tgatcccgcg cctttcgttc cgcccttgcg gctgccttcc gttctgccgc
     1741 tatgattgcc gttaccctgg cttttgctgc ggctgctttc tctgcggttt tttctgcccg
     1801 tatcagtgcg gacaacgttt tttcatccgt cgttgttcgg ttttttttct ctgccagtaa
     1861 cacaagtaat ctctgctgct ctgacggtga tttcagtccg ttgatgtagg caatttttgc
     1921 acttaaccac tcttcacgat ttgtcattct tacctctgca cttttgccgt taatgtgagt
     1981 tgttattgtg cataatatca ccttgtctgc ctgcgtgtga gaccgtaaaa tcatccctga
     2041 ttaattcagg gatgcgcact tagacgtttc tctccttcgt cgagaaacag tgcgctcctg
     2101 cggagggctg aacggcagat ggcaagctac cattgcaccg ttaaaacggg cgcaaaaggc
     2161 ggagccttaa aacatgctga ttacatttcc agatccggcg aatataagaa ctacaaatcg
     2221 cgggaggatc tggagttttc gtcatccggt aatatgccat cgtgggcaaa ggaaaatcct
     2281 actgagctat ggaaagccgc agacgaattt gaaagaaaaa acgggacggc ataccgtgaa
     2341 attgagatcg cgttaccgcg tgaactgaca cgcgaacaac ggatagaact tgttgaagat
     2401 ttcgtgcaaa aggaacttgg cgatcgccat gcctaccagt acgcgatcca caatccgcca
     2461 ggtgcgatag acggaaagga gcagccacac gcgcatatca tgttttgcga gcggattaat
     2521 gatggtattg aacgcgatcc gcagcaattt tttaaacgtg ccaacagcaa atcaccagag
     2581 cagggaggcg caaaaaaagc acgctttggc gaaacacaac aagagcgaaa agccgccctt
     2641 gttgcgctgc gttcccgctg ggcagatgta cagaatgagc accttgcgcg acacggtcac
     2701 gagtcgcgcg tagatcatcg ttcgctgaaa gaacagggta tcaatcgcac gccggaagtt
     2761 catcttggcc ccgttcaggc cgccagtctg aatggggagc aaattgttgc aatccaggaa
     2821 cggaggaatg ccgagcggga actcaagacc gccagagatg ccgcaaatgc cattcagccg
     2881 gaacaggagc aaaagcaaaa aatcaaggca gttgagcctg ttcgttctgc ccgattaatg
     2941 gatgagtatc gggatgttgc ccggaaagtg atcacactgg agacaagaca gaatgagagt
     3001 caggaactgg cgctaaaaca ccacttgttt atgaaggcag aagcgaaaga gcaagaactg
     3061 gcgaaactga aagaacaact aaaaaaaatg gacgagcagc gttctgttta taagaacaag
     3121 attgatgaga aaaaacagaa tattacagcg ctagttgaac agaaaaaatc gctcgaaaga
     3181 agttttattg gcctgtttaa aggcgggatg aaacgtgagc ttgaggaaca aatcaagaca
     3241 caggtcagcc aactggaaaa ggccgagcac gagatgaagc agttggacga gaattatcag
     3301 cagcttcaga tgcaggctga taatgaacag aagaatttct cacactcacc ggaatatcag
     3361 tattcggaag cggttttgag cggaatacct cgttcgattt taaaactgca attcgctctg
     3421 ttgcccagtg agagcactat cgccttcaac aagaatgctc tggacgtaga acaacgaaaa
     3481 gaagctgcta tagctgccga actttgcctt agtgaagatg agcggcggca aatcaggcga
     3541 gagattcagg atgttctaaa cggggacgcc tgcgaagggc agcagacaga aactctccag
     3601 cagaaacgtc ccgagaaaga tgcgcacatc gagtgggaac gggaagaatc tccgcaagtc
     3661 gtcatcccaa aaacttatgt ttttttctct gcgtgcaggg gcgttaagac agaaatcagg
     3721 ccgtttgagt cgtgcgatga tgctatcgag tgggggttgg ttgagtgtga actgcatgag
     3781 cgttttaagc gtgatctcat tgtttatcga gttgatgctg aattgatagg aaaaggtgac
     3841 gatacagtga tgaaaaatgc cgaacgcatt gatctcactg ataaacttga aggatggaat
     3901 cagcaaacac acatcgaaaa agagagcctt tttgaacgag tacagcagcg gtcacaagat
     3961 gatgagctgg agatgtagtt actgacgcgc ttcgcttgtc caacgcctca cggaacgcga
     4021 aaaaattccg cgtcccgttc accgttttct gatgagaaag tttgctgttt tgacccgttc
     4081 gcccttctga acgctcgaaa cagatcgcgc attgctttcg tgcatagtta tgcaggctcc
     4141 tgaaaacgat tctggcgcgt ttttctggtt ttgcctggtg tttcattgtc tttttgc
//
