LOCUS       NZ_CP102741             4234 bp    DNA     circular CON 07-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain AH19MCS8
            plasmid pYUAHMCS8-2, complete sequence.
ACCESSION   NZ_CP102741
VERSION     NZ_CP102741.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30275502
            Assembly: GCF_024722455.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4234)
  AUTHORS   Wang,J.
  TITLE     whole genome sequences of Salmonella enterica serovar Kentucky
            AH19MCS8
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4234)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2022) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/06/2023 04:45:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,867
            CDSs (total)                      :: 4,743
            Genes (coding)                    :: 4,598
            CDSs (with protein)               :: 4,598
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 49 of 145
            Pseudo Genes (incomplete)         :: 102 of 145
            Pseudo Genes (internal stop)      :: 22 of 145
            Pseudo Genes (multiple problems)  :: 26 of 145
            Pseudo Genes (short protein)      :: 1 of 145
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP102741.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4234
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="AH19MCS8"
                     /serovar="Kentucky"
                     /isolation_source="chicken meat products"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pYUAHMCS8-2"
                     /geo_loc_name="China: Anhui"
                     /lat_lon="30.56 N 118.45 E"
                     /collection_date="2019"
                     /collected_by="Jing Wang"
     gene            225..1133
                     /locus_tag="NWA03_RS24215"
     CDS             225..1133
                     /locus_tag="NWA03_RS24215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009440807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_058657849.1"
                     /translation="MSAALQYFEENLPHRPYHTDDPAFGLRISGKGRALLARYIQQNQP
                     HAQHWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNLAVRTAPDASVKV
                     LKYAAAIERALCEKLDADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASE
                     RRSVDKHYGLGRNCHLFEITRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRKFSPEGFSAVQAARGRKGGLAKGEAYEDKRFMALCMLENGYSQ
                     KAIAAMLDVHRNTIRNWAMHK"
                     /name="replication initiation protein"
     gene            complement(1339..1614)
                     /locus_tag="NWA03_RS24220"
     CDS             complement(1339..1614)
                     /locus_tag="NWA03_RS24220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_052995416.1"
                     /translation="MSRTLEQKIAEAEARLQRLKAKSRSLDTAQKVIVGAAMLARVRRP
                     EEAQLRAFLLQFLRKEVTRQADVNRLQPLINELEKLPRPPAKPQNG"
                     /name="hypothetical protein"
     gene            1793..4012
                     /gene="mobQ"
                     /locus_tag="NWA03_RS24225"
     CDS             1793..4012
                     /gene="mobQ"
                     /locus_tag="NWA03_RS24225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_208207315.1"
                     /translation="MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRK
                     RGVDDAVILTPANAPSWCGDRSVLWNAVEKAEQRRNSQLAREIELAIPREISREAAREA
                     VLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTTRAVGETGFAGKVRDWNDRALAET
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAMEKRGMETERGEQ
                     NRLINSLNLEIQVSRTRLAVIQVQENVRKRELSDAARRAAEALNLTIPAANASADTLRE
                     FIATLPQECGNAWEMTPEFVAMNGKANDIKREGNALVKERDILEKEMTGLRKARPVASI
                     LSELPLMTWAEPEYRKRQLRFWKLEKQIESLLRTYRAVKERDIPARRQAFETQWNTWIS
                     PGMAELKEKLSAREAERRREEAEAEARRKEQEYDARLKHHDNHRLSRETALAGVITELG
                     RAREPGTGRITRYMMLSNRAGEFTVWGDELAHYPQSVHDPVNVYLSPGGAVMVSDIREG
                     MPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPHHWPDNFYFSDDRRPVA
                     SPLPSAHRVDVTAYAAPEQLMPVVFSTERNSRTLNLLLCKGPEEMLVGFVRLEDELRPV
                     LALPSPDYSHLMVSIITENGIHLAGYGEAINRDADTPYPPEPKLMQFRLKGCQDTLFAA
                     INKPEEMPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHYRGMSM"
                     /name="mobQ"
     Typing          complement(1619..1792)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.0"
                     /coverage="98.0"
                     /evalue="1.23e-74"
     Typing          complement(1793..2151)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          226..953
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.376"
                     /coverage="96.0"
                     /evalue="0.0"
     Typing          1794..4009
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.369"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgtgtttttt gcgtcagaac gcgtctgaga gcgttttaag gggtacgtac aacaggagtt
       61 atggtaaatg gatcggtttt tcgggaagga tcgacaggat ttgccgttgg gtgtagtgta
      121 agcgactgaa aaacaaacgc ccctgaaatt cgtgtagatc cgccaagact ttcacgaaga
      181 tacaggggcg atgtcggtcg ataacctgga aggaatcgta acacatgagc gccgcgcttc
      241 aatacttcga agaaaattta cctcaccgtc cctatcacac ggatgatccc gctttcggcc
      301 ttcgcatctc cggcaaaggg cgtgcgcttc ttgcgcggta cattcagcag aaccagccac
      361 atgcgcaaca ctggctggtt tttgacgttg accgcgaggg ggctgcgatt gactggagcg
      421 accggaacgc ccccgcgccg aacatcaccg taaaaaatcc cgtgaatggg cacgctcacc
      481 tgctatacgc gctcaatctt gccgtgagaa ccgcgcctga tgcgtcggtt aaggtgctga
      541 aatacgccgc tgcaattgaa cgtgcgctgt gtgagaaact tgacgcagat gtgaactaca
      601 gcggactgat ttgcaaaaat ccgttccacc tggaatggca ggtgatggag tggcgcgagg
      661 aagcctatac cctcgatgaa ctggctgatt atctcgattt gagcgcctca gagcgtcgta
      721 gcgtcgataa acattacggg ctggggcgaa actgccacct gttcgaaata acgcgtaaat
      781 gggcttacag agcgattcgt cagggatggc cagcattctc acagtggctt gatgccgtga
      841 tccagcgtgt cgaaatgtac aacgcatcgc ttcccgttcc tctttcactg gctgaatgcc
      901 gggctattgg caagagcatt gcgaaataca cgcacagaaa attctcaccg gaaggctttt
      961 ccgctgtaca ggccgctcga ggccggaaag gtggccttgc taaaggcgaa gcctacgagg
     1021 acaagcgttt catggcgcta tgtatgctgg agaatggata ttctcagaaa gctattgcgg
     1081 cgatgctgga tgtacatcga aatacgatcc gtaattgggc aatgcacaaa tagccttatc
     1141 agataacagc gccttttcgg cgcttttttg agctgttggc gttcctgcgg tttttccggt
     1201 tccgcccagc aatggcgctg gtttcctcgt gattgcggtg gtagcgctcg ccgcagcctc
     1261 atgaccgagc gtagcgagcg aatgtgcgag gaagcgcaaa ggcgtccggt ggtgcatgtg
     1321 gcacttacgc gccggggctt atccgttctg cggtttcgca ggtggtcttg gtagcttctc
     1381 cagctcgtta atcagtggtt gtagccggtt cacatcggcc tgtcttgtga cttcctttcg
     1441 caggaactgg agcaggaacg cacgcagttg cgcctcttcc ggcctccgta ccctcgccag
     1501 catggctgct cccacaatga ctttttgcgc agtgtccagg ctccggctct tcgccttcag
     1561 gcgctgcaat ctggcctcag cttcagcaat cttctgttcg agtgttctgc tcatttcgtg
     1621 actccttgcg cggtgaaaaa tcgcatttta gctcgtcact ggtagtttaa aaactgagct
     1681 ggcataatgc acggcatatc acgaagtgcg cacttataca atcttcactt cgtttcgatt
     1741 gtgtgcgccc tgcggggctg aaagaaaacg gcaaaaaggc attacggcag aaatggcgat
     1801 ttatcatctc agcatgaaaa tcatttcgcg aaaaaacggc tacagtgccg ttgcttctgc
     1861 tgcctaccgt tccggctctg tcatacccga tgaccgtacc ggattaatcc acgattacac
     1921 ccgtaaacgc ggcgttgatg atgcggtcat tctcacccct gcgaatgcac cgtcctggtg
     1981 tggtgaccgt tccgttctct ggaatgcggt cgagaaagcc gaacagcgcc ggaactccca
     2041 gctggcaagg gagattgaac tcgccattcc ccgtgagatt tcccgcgagg ccgcacggga
     2101 ggccgttctc gcttttgtcc gggaaaactt tgtcagtcgg ggcatgattg ccgatgtggc
     2161 gttccatcat atggaccgga ccaaccccca tgcacacatc atgctgacca cgagagctgt
     2221 cggggaaacg ggattcgcag gaaaggtcag ggactggaac gaccgggcac tcgccgagac
     2281 gtggcgcgca tcatgggctg accatgcgaa cagagcgctt gcgaacgccg gctaccagga
     2341 agagatagac catcgttcat acgagcgtca gggactggag aaagcgccgg gccttcacct
     2401 cggaaaggct gcctgtgcga tggaaaaacg gggcatggaa acagaacgcg gtgagcagaa
     2461 ccgcctgatt aacagcctta acctggaaat acaggtttcc cgcacaaggc tggcagtcat
     2521 ccaggtacag gagaacgtgc ggaaacggga actcagcgat gccgcacgtc gtgcagcgga
     2581 agcccttaat ctgaccattc ccgccgcgaa tgcctcagcg gataccctgc gggaattcat
     2641 tgccacactg ccgcaggaat gcgggaacgc atgggagatg acaccggagt tcgtggcgat
     2701 gaacgggaag gcaaacgaca tcaaacgtga ggggaatgcg ctggtgaaag agcgggatat
     2761 tctcgaaaaa gagatgaccg gactcagaaa agcccgtccg gtagcgtcca tcctgtcaga
     2821 gcttcccctg atgacatggg ctgaaccgga ataccgcaaa agacaactcc gcttctggaa
     2881 actcgagaaa cagattgaat ctcttctccg cacctacagg gccgtgaaag aacgggacat
     2941 tcccgcccgt cgtcaggcct ttgaaacgca gtggaatacg tggatttcgc cgggaatggc
     3001 agagctgaaa gaaaaactgt cagcacggga agcggagcgg cgcagggagg aagccgaagc
     3061 ggaagcgcgc cggaaggaac aggaatatga cgcacggctg aaacaccatg ataaccatcg
     3121 cctgagccga gaaacggcat tagccggggt tattacggag ctggggcgtg ccagagagcc
     3181 gggaacgggc aggataaccc gctacatgat gctgagtaac agagccggag aattcacggt
     3241 atggggtgat gagctggcgc attaccccca gagtgttcat gacccggtga atgtttacct
     3301 gtcgccaggc ggggctgtga tggtctcgga tatacgtgag ggaatgccag aatctcatga
     3361 gacgatggcg cggcctgagc gtgtgagaat gtattccggt gcgacggtcc ggcatgtact
     3421 ggaacagatg cgccaggggt ggccctctta cggttttccg gcgctgccgc atcactggcc
     3481 ggataatttt tatttcagcg acgaccgcag gcccgtagcc tctccgctgc cgtcagcgca
     3541 ccgggtggac gtcaccgctt atgcggcacc ggagcaactc atgcccgttg tcttttcgac
     3601 agagcgaaac agcaggacgc tgaatctgct gttgtgcaaa gggccggagg aaatgcttgt
     3661 cggttttgtg cgcctggagg acgagctgcg tcccgttctt gcgcttccgt cgccggatta
     3721 cagtcatctg atggtaagca tcatcacaga gaacgggata cacctggcag gctacggtga
     3781 ggccataaac cgtgatgctg atactccgta cccaccggaa ccgaagctga tgcagttcag
     3841 gcttaagggc tgtcaggaca cgctttttgc tgccatcaac aaaccggaag agatgccgga
     3901 ttatctcttc cgtcaactcg gatttaatca gacctggcat gaatggaagc gggacgaaca
     3961 gcacaggcaa caacaacgac gccccggaca ttaccggggc atgagtatgt gatatccggg
     4021 gctgcacccc gaaccccgcc aacgtctcac gggacacgaa aaaattccgc gtcccgtgag
     4081 gcgttttctg gatgagaaag tttgccgttt tgacccgttc gcgcttctga acggtcgaaa
     4141 ccgatcgcgc atcgctttcg tgaatagtta tgcagacccc tgaaaacgat tctgacgcgt
     4201 ttttctggtt tggcctggtg ttttcttgtc tttt
//
