LOCUS       NZ_CP102493             2495 bp    DNA     circular CON 08-JAN-2024
DEFINITION  Klebsiella pneumoniae strain BA13643 plasmid pCol_pHAD28, complete
            sequence.
ACCESSION   NZ_CP102493
VERSION     NZ_CP102493.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21565548
            Assembly: GCF_026427615.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Veeraraghavan,B., Shankar,C., Teekaraman,M. and Shanmugam,S.
  TITLE     Klebsiella pneumoniae BA13643
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Veeraraghavan,B., Shankar,C., Teekaraman,M. and Shanmugam,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-AUG-2022) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method                   :: Unicycler v. September 2021
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 90.0x
            Sequencing Technology             :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 05:29:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,457
            CDSs (total)                      :: 5,333
            Genes (coding)                    :: 5,198
            CDSs (with protein)               :: 5,198
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 56 of 135
            Pseudo Genes (incomplete)         :: 75 of 135
            Pseudo Genes (internal stop)      :: 28 of 135
            Pseudo Genes (multiple problems)  :: 20 of 135
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP102493.1.
            Bacteria and source DNA available from Department of Clinical
            Microbiology, Christian Medical College, Vellore, India.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="BA13643"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pCol_pHAD28"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2020"
                     /collected_by="Department of Clinical Microbiology,
                     Christian Medical College, Vellore"
     gene            286..477
                     /locus_tag="LCN95_RS27225"
                     /old_locus_tag="LCN95_27230"
     CDS             286..477
                     /locus_tag="LCN95_RS27225"
                     /old_locus_tag="LCN95_27230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_021243041.1"
                     /translation="MTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQILSETEPAV
                     RTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            complement(768..953)
                     /locus_tag="LCN95_RS27230"
                     /old_locus_tag="LCN95_27235"
     CDS             complement(768..953)
                     /locus_tag="LCN95_RS27230"
                     /old_locus_tag="LCN95_27235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1319..1546)
                     /locus_tag="LCN95_RS27235"
                     /old_locus_tag="LCN95_27240"
     CDS             complement(1319..1546)
                     /locus_tag="LCN95_RS27235"
                     /old_locus_tag="LCN95_27240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          634..721
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          complement(1962..2490)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 atcacatttt ctcctgacgc gttttctttc actttctgcg cctgtcttat gtggcattaa
       61 tgctatgtgt tactgccatg ctacatctta agccagtata cactccgcta gtgctccgtg
      121 actggtccgg cgctgcgccc ggaacccgcc tgtaccggtt cagcagccgt tccggcctga
      181 ctgcaatttt ttttttttca tccctgcccg ctaccctgta aacctttctt ctgcgttgcc
      241 gttaacagta ggtaagccat gtttggtttt tcttccggag ccctgatgac tcttagtgat
      301 gatgagcgac acctgcttgt gtccgttgtt tcggtctggc tacggcgtgc cggaggggat
      361 gccggagcca tgatgctgga tgcataccgg cagattttgt ctgaaaccga accggccgta
      421 aggactgtca tgctcgaatt tcttgaatcc gttcgcattc attacatttc gtcctgagca
      481 ttttctgtat ttctgtccat acttaaacga ggcggccgtc acggacggtg gtcgtcgttc
      541 catgatgctg ttatggacga gtgagagtaa tctaatctaa cttgattgag ttccgggcgt
      601 gccgcccggt tttttttgct gtttcccggt gtccgttccg ggacaggatg tgcatttgta
      661 ataccgcgca cgcgccggca tcacaaatac cctggtcagg gctgcgcccc gacaccccgc
      721 catcgcctca cggccgcgca ctgaattgcg cacccgttca ccgattttca cgcattttcc
      781 tcgcctatct gtgcgttcag catggcgtaa agcgcttcgg cctgatcgtg caggtgctca
      841 cagcagccgg cagcctcatc cagatccatc tgctcgagcc gctcaaggag gagaagtgtc
      901 tgtgcgcgga taaatttggc catattgagg gcggcggatt cctgtctggt cactggtgat
      961 tttccccgtc tggtgatgat ttttgcgtga aaagagcatg gcgtcattct ggtgcatagt
     1021 catgcatgcc gttaaaattt aacaggcgcg tttctgacgg gttccggggt ggtttgttgt
     1081 ggtttttgtc atggtttcgt caggaacgcg ctgaacgcgt ctcaggcggt gcgggcaacg
     1141 gatgttatgg taaattcttg ggggcttgat tataaaatac cgcacttcct cttatgtctt
     1201 gtgcttttta gacaaccctg aaagctttta gctttggtga tgcaatttgc tgggattttg
     1261 gcggagaacc acaggtaaag aaaaaggcca cattagcggc ctttttcgga gaagatgctc
     1321 agtgcggaat ttcggagact tctttaacgt cggttttatt gatctgctgt ttgacaccat
     1381 tcgcgtctgt atagccaagc aggcctgagt ctgattcttt aggtttgccg tcgctgacaa
     1441 tagtgcgacc gtcattggtg tgtatggcat agcttgtgcg cgtgcagccg gtgagggctg
     1501 aaagcgcaac tgccgctgcg aacactgaaa caaaaatctt tttcaaagcc agctcctttt
     1561 atccatatca gttttggtca ctaaccatct aactataggt cattttttat gtgaaaagag
     1621 gcttgatggt gggctgtata tcgagttagg cgcgaggtgc tatggtcaaa gtgtggtgtc
     1681 aggcggggag gaggcttata tgagatgtaa tccggccgat acatatacca agatgattta
     1741 agtattcctc tttgtgaggt tggatgtcta atttataaag gatcttcttg agatcctttt
     1801 tttccgcgcg taatctcttg ccctgtaaac gaaaaaacca ccctggcagg tggtttttcg
     1861 aaggttaggt aatcctggca gatcccctaa ccgtggtaac agtcttgtgc gagacatgtc
     1921 accaaatttg tcctttcagt gtagcctcac taaggccgcc acttcaagaa ctcttgagac
     1981 atctctcgca catcctgttt gccaatggcc gttgccaatg gcgattagtc gtgtctttcc
     2041 gggttggact caagttgata gttaccggat aaggcgcagc ggtcggactg aacggggggt
     2101 tcgtgcatac agtccatcct ggagcgaact gccttcccgg aactgagtgt caggcgtgga
     2161 atgagaaacc gcggccataa cagcggagtg acaccggtaa accgaaaggc aggaatgcgg
     2221 gggagcacga gggagccacc agggggaaac gcctggtatc tttaagccgc atcgggtttc
     2281 gccaccactg atttgagcgt cagattctgt gatgcttgtc aggggggcgg agcctatgga
     2341 aaaacggctt tggcgcggcc ttatgctttc ttcgttaagt atcttcctgg catcccccag
     2401 gaaatttctg atccatccgt aagcccgtcc cgctcgccgc agccgaacga ccgagcggag
     2461 cgagtcagtg agcgaggaag cggaatatat tctgt
//
