LOCUS       NZ_CP102076             2278 bp    DNA     circular CON 20-AUG-2023
DEFINITION  Enterococcus faecalis strain JF3A-4253 plasmid pJF3A-4253-7,
            complete sequence.
ACCESSION   NZ_CP102076
VERSION     NZ_CP102076.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30011847
            Assembly: GCF_024579795.1
KEYWORDS    RefSeq.
SOURCE      Enterococcus faecalis
  ORGANISM  Enterococcus faecalis
            Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae;
            Enterococcus.
REFERENCE   1  (bases 1 to 2278)
  AUTHORS   Chae,J., Oh,J. and Jeong,J.
  TITLE     Enterococcus faecalis JF3A-4253 complete genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2278)
  AUTHORS   Chae,J., Oh,J. and Jeong,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JUL-2022) Division of Biotechnology, Jeonbuk National
            University, Kobongro, Iksan 54596, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.9.4b
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 103.0x
            Sequencing Technology :: Illumina iSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/20/2023 05:03:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,008
            CDSs (total)                      :: 2,927
            Genes (coding)                    :: 2,882
            CDSs (with protein)               :: 2,882
            Genes (RNA)                       :: 81
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 11 of 45
            Pseudo Genes (incomplete)         :: 31 of 45
            Pseudo Genes (internal stop)      :: 6 of 45
            Pseudo Genes (multiple problems)  :: 3 of 45
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP102076.1.
            Bacteria and source DNA available from Bacteria.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2278
                     /organism="Enterococcus faecalis"
                     /mol_type="genomic DNA"
                     /strain="JF3A-4253"
                     /isolation_source="Rectal swab"
                     /host="Pig"
                     /db_xref="taxon:1351"
                     /plasmid="pJF3A-4253-7"
                     /geo_loc_name="South Korea"
                     /collection_date="2020"
     gene            complement(join(2175..2278,1..292))
                     /locus_tag="NP948_RS14995"
     CDS             complement(join(2175..2278,1..292))
                     /locus_tag="NP948_RS14995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016177733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_155282203.1"
                     /translation="MNKFVNWYKKLNAVGRVLLTLVLLGVFNWVLSLLFHTLFDWLSIL
                     YYGGYALLILGVLKLNLRTSISWVIYWLTPFIAWNLSSIYVHHNFKGFQTIIISLLSTF
                     AFSVMLLALSEAFKEAFKESKEDGNNG"
                     /name="hypothetical protein"
     gene            complement(295..1116)
                     /locus_tag="NP948_RS15000"
     CDS             complement(295..1116)
                     /locus_tag="NP948_RS15000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017369815.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_129217739.1"
                     /translation="MAKKQNYIWRNDRNFALDEYEQQQYYYVVESNDIINKARHDLTAR
                     ELKIMDFVISKIQPEDTQFNVIKTSMYELTKVLNIKQNGKNYGDMAKAIGDLRKKEVLV
                     YDEERKVITQTGWVQSADYHENGQVEIELSPKLAPHLLGLKNHYTQHLLIDTTKLKSRY
                     SILLYKLMRECDKDKGKSIAILQGTPEEFKEWLGAPKDYDYRRLKENILKKAVEEINLK
                     IDDMDLEILQGRYGRKVVQVEIHNNWTVGRATKENAEYVESITTHDWLNGE"
                     /name="replication initiation protein"
ORIGIN
        1 ttataatggt ttggaagcct ttaaaattat gatggacata aattgaagat aagttccacg
       61 caataaaagg agtaagccaa taaatcaccc atgaaatact cgttcgtaaa ttaagtttta
      121 aaacaccaag gattaacaag gcgtatcccc cataataaag aatacttaac cagtcgaata
      181 aagtatgaaa gagtaacgat aatacccagt taaacacccc taataaaaca agtgttaata
      241 atacacgacc aacagcattc agcttcttat accaatttac aaatttattc atttttactc
      301 tccattcaac caatcatgag tcgtaatact ttcaacgtat tccgcatttt ctttagttgc
      361 tcgtcctact gtccaattat tatgaatttc aacttgaacc actttgcgac cataccgccc
      421 ttgtaaaatt tccaagtcca tatcatcaat ttttagatta atttcttcaa ctgccttttt
      481 taatatattt tcttttaatc ttctgtagtc ataatctttg ggagctccta gccactcttt
      541 aaattcttct ggtgtccctt gtaagattgc aattgacttt cctttgtcct tgtcacactc
      601 gcgcatcaat ttataaagca aaattgaata cctactttta agctttgtgg tatcaatcaa
      661 caagtgctgg gtgtaatgat ttttaagccc tagcaaatga ggagctagct taggagaaag
      721 ttctatttct acttgaccat tttcatgata atcggcagat tgcacccaac ctgtttgagt
      781 gataactttt cgttcttcat cgtaaactaa aacttctttt tttcgtaaat caccaatggc
      841 ttttgccata tctccatagt ttttcccatt ctgcttaata tttaaaacct tagttaattc
      901 atacattgaa gtcttaatca cgttaaattg agtatcttct ggctgaatct ttgaaatgac
      961 aaagtccata attttcaatt ctctagctgt taaatcatgt ctagccttat tgataatatc
     1021 attagactca acaacgtagt aatactgttg ttgctcatat tcatccaaag caaagtttcg
     1081 gtcattccgc cagatataat tttgtttttt tgccataaat attgtccttt caaacagacg
     1141 attttatcat attgtgacat tatataataa aatgactatg aaatcaaatg caaaaaaaaa
     1201 cagactggca cgtcatgtac tttttactgg cacgtcatgt actttttact ggcacgtcat
     1261 gtacttttta ctggcacgtc atgtactttt tactggcacg ttatgctctt aaacactgat
     1321 ataaagccat tcttatttcc ctaagtatta taaagtacta aagaattatt atataaatat
     1381 aaagagcgcg cgtaggcgtg tgttttgttt ctctattcta agaacaaaaa cgacaaacga
     1441 aaaagataaa aaaggagtga ggggaaatca ccctcacatt ttacttgcag cgttcacttc
     1501 gttcactcgc gaaaagaaaa gatcaacccc tcttttagga atgactttgg atagctctaa
     1561 ttgctcgcct atcctgtttt aactgtttga ctagataaat atgcttaata agcaatcagg
     1621 cgccttacag gcggtcaggg caagccctaa caacccaaaa gcaactaaaa atcaatttaa
     1681 aacagcatat tttgcgtttt aagcggtttt tagttaaaaa caagtaaatc gatagctaac
     1741 aagcttaaaa cgtcttagag acgattttag agactgattt atgcaaatct ttaccagtca
     1801 tttttgtctt taattttttt taggcaggct acgtgtttgg aaatttctta aaaccttaaa
     1861 aaaattagaa cgactaaagt ttaatttttt tatgtcgctt tgctcgattt tgtaactaga
     1921 aattttgttt agttttaaag attaaaaaag attgacgaga attatcctaa gtgcgcactt
     1981 atacgcagta aaaaaatcta ccgatttttt tctacgttgt gctaaaagcg cacttacacc
     2041 caccaaattt ttcttacgaa aaattgctgt gtttgtgcta aaaaagagta cagatcactt
     2101 tcatgaactt gtactctttt ttcgtcaggc gtgttggtta aaattcgctt cgctcatgta
     2161 gtaatttaca tttattatcc attgtttcca tcttcttttg actctttaaa tgcctcttta
     2221 aatgcctcag atagggcgag caacataact gaaaaagcga acgttgataa caaactaa
//
