LOCUS       NZ_CP101381             3136 bp    DNA     circular CON 31-JUL-2023
DEFINITION  Salmonella enterica strain SC2016290 plasmid pSC2016090-3k, complete
            sequence.
ACCESSION   NZ_CP101381
VERSION     NZ_CP101381.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29630312
            Assembly: GCF_024364945.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3136)
  AUTHORS   Peng,K., Li,R. and Yang,X.
  TITLE     The genomic epidemiology of mcr-positive Salmonella enterica in
            clinical patients from 2014 to 2017 in Sichuan, China and global
            epidemiological features
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3136)
  AUTHORS   Peng,K., Li,R. and Yang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JUL-2022) College of Veterinary Medicine, Yangzhou
            University, No. 48, Wenhui East Road, Hanjiang District, Yangzhou,
            Sichuan 225000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Oxford Nanopore MinION; BGISEQ-50
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/31/2023 03:27:06
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,115
            CDSs (total)                      :: 4,992
            Genes (coding)                    :: 4,847
            CDSs (with protein)               :: 4,847
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 39 of 145
            Pseudo Genes (incomplete)         :: 116 of 145
            Pseudo Genes (internal stop)      :: 19 of 145
            Pseudo Genes (multiple problems)  :: 28 of 145
            Pseudo Genes (short protein)      :: 1 of 145
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP101381.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3136
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SC2016290"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="pSC2016090-3k"
                     /geo_loc_name="China: Ya'an"
                     /lat_lon="29.67 N 102.57 E"
                     /collection_date="2016-11-01"
                     /collected_by="Center for Disease Control and Prevention of
                     Sichuan Province"
     gene            complement(315..710)
                     /locus_tag="NMU35_RS25545"
                     /old_locus_tag="NMU35_25535"
     CDS             complement(315..710)
                     /locus_tag="NMU35_RS25545"
                     /old_locus_tag="NMU35_25535"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     gene            886..1812
                     /locus_tag="NMU35_RS25550"
                     /old_locus_tag="NMU35_25540"
     CDS             886..1812
                     /locus_tag="NMU35_RS25550"
                     /old_locus_tag="NMU35_25540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001314449.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKEKYRDRQDLEYSAHGNMPE
                     WARDNPSHFWQAADQFERANGSTYRELEIALPRELTAEQRLELVQDFVRQEAGERHAWS
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERTPEQYFRRYNARYPERGGAKKDSGSLT
                     LTQQKEQLRELRKRWEVKHNEHMRKHGFERGFIDCRTLKEQGIERRPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGHDIREWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQNRTEPERVKSPSRGFSMGF"
                     /name="MobA/MobL family protein"
     gene            1815..2348
                     /locus_tag="NMU35_RS25555"
                     /old_locus_tag="NMU35_25545"
     CDS             1815..2348
                     /locus_tag="NMU35_RS25555"
                     /old_locus_tag="NMU35_25545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_142595565.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQKLDVAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGWVSVAFLVMFCVLGWGMKTMLDRNYNATAAVYQKVVTLED
                     KLAEKPATGKSRKN"
                     /name="hypothetical protein"
     Typing          887..1809
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.052"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cccttcactg ggaggggtga gttgttgccg ttccctccga ccttccacca tccagcatat
       61 cgcacgatcc catgagcacc gcaacaactg ataactccag agcaaaaaaa aaaaaggatc
      121 tgcatcatgt gagagtgatc ccaccgctcg ccgcagcccc agcgaccgaa cgtagtgagc
      181 gagtgggcga ggaagcggaa gtgaaccgga aaccacattg agcacgtacg cacctatgcc
      241 agatccgcgc gtagcgcgtc gcgaaatcga aaacattgaa caccggcagg caaacgcacc
      301 accacgcagc ggaattaatg atgatctggg cttgtttcaa gatcgagcct gattgcctta
      361 agtttctgta atatattgtc ttttgggtat ctcagttcgc ctgtttttgt gtccactagt
      421 ccggcctcga tcagtaaccc cgccgcaaga aacaggcggt gattgcgttc ccgtcgttgt
      481 gttttcccct ccatccgttt ttggttggcc tgtttgcgtg cgttctcctg tgcctgtagc
      541 tcgttttttt ctgcggttgc caggacgtgg agtagtttgc gctcctgttc tgttagtccg
      601 gcttcgttat cgagcaggtc aatgatctgc ctctgtcgtg cggtctgttc tccgagcttc
      661 ctgataaagc cgattcgttt cttcaaccag tcgatgttgc tgatgcgcat gtttgggatg
      721 ctccctggtg ttttttgcgg tgtgttgggg ttgtgcagta tatcgcttgc ggtcggtggg
      781 tgcagggggt atcttccgtg ctaattcgta aaattagaag gaagcgcact tatatgtttc
      841 tctccttcgt cgagaaacag tgcgctcctg cggagggctg aaaccgtggc aacctatcac
      901 ctcagcgtta aatttggtgg caaggggcag gctgcaaacc acgccgatta catcgagcgc
      961 aaagagaaat accgcgaccg tcaggatttg gaatattccg cacacggaaa catgccggaa
     1021 tgggcgcgag ataatccctc acatttctgg caggcggctg accagtttga acgtgcgaac
     1081 ggttcgacct atcgggaact tgaaattgca ttaccccgtg aactgacagc ggaacagcgc
     1141 cttgaactgg tgcaggattt tgtacgtcag gaagctggcg aacggcacgc ctggagtttt
     1201 gccattcaca atccgaaagc gagcattgac ggcggcgaac agcctcatgc gcatatcatg
     1261 atgagccagc gtgtgaatga tggcattgaa cgtacaccgg aacagtattt ccggcgctat
     1321 aacgccaggt atcccgagcg gggaggtgcg aaaaaggatt ccggaagcct gactctcact
     1381 cagcaaaaag agcagttgcg ggaattgcga aaacgctggg aggtgaagca caacgaacat
     1441 atgagaaagc atggctttga aaggggcttc attgactgcc ggacgctgaa agaacagggc
     1501 attgaacgac gtcccgaagt gcatctgggt tttgaagctg ccggacggct tgatgatgcc
     1561 cagcgtcatg acatcatgca aaaacggtct gaaccggact attcccgcca tcttgaacag
     1621 gcgcgaacgg tcgggcatga catcagggaa tggctggaca ctccggttaa gcaacatgaa
     1681 ctggtcagaa ggctgcaaca tgatgttgcg cgggagcatg gctttgacat gagagacaga
     1741 gtgagcagac agaaccgaac tgaacctgaa cgggttaaat caccgtcacg tggattttct
     1801 atgggattct gaacatggcc agcacagaag aaaaattact cacgctcctg ttatcggtgg
     1861 agcatctgca acataccgca atggagcaac agaaagctgt tgctgattct ctggctgtgg
     1921 caagggaaac acttcgcgga tatcgggata tttctgacgg tgtggcaaaa caggtcaggg
     1981 atgaagtcag aaacgaggtg cagaagctgg atgttgcagg gctgataggt gagcgcatca
     2041 gccaggattt tcagcggctg gaagagtcag tcgcaaacat gaaggcaaac gcggatgccc
     2101 tgaacaggga tattgcgaca attcacagca atatcgtgca ggaatacaac acccttaaag
     2161 ggtatagctg gaaatggctg ggttgggtgt cagtggcttt tctggttatg ttctgtgtgc
     2221 ttggatgggg aatgaaaaca atgctcgaca ggaactacaa cgccacagcg gcggtgtatc
     2281 agaaagttgt gacactggaa gataaactgg cggagaaacc agcaacaggg aagagccgga
     2341 aaaactgacg cgcttcgctt gtccaacgcc tcacgggacg cgaaaaaatt ccgcgtcccg
     2401 ttcaccgttt tctgatgaga aagtttgccg ttttgacccg ttcggtgctc agatttggcg
     2461 aaattgattc cgaatcactt ttgtgaatag ttatgcaagc ccctggaaac gtttctgacg
     2521 cgttttttga ggtaggggtg ggggaaagca tggttttttg atgttttgag cgtaaaagcg
     2581 tgaaaaatcg cgttattgtg cttgcgatct ttcgtcaggg agcgtagaac gaaaaaagcc
     2641 cgccgttagg cgagcttctt cgggttcatt gaggttttcg acctcctcaa tgttcctgtg
     2701 gagtctgttg cggtgacaac ggaaaccagt tcattcagtt tgcatgaacc ttctgtattc
     2761 ttcaagcatt accgaccgca cagcctcccc agaatcccga aaaaatcctg tttttgcaga
     2821 tgattgcgtg tttgcaaaga ccgtttgcgg ttgggggagc tgtgacgacg gcaaccgcac
     2881 gcgtgagagt tccgctaccg gcgcagagag tttcatcgac agcggacacc tgatgagttg
     2941 ccacaaaaac cgtatgtagc gcggctagat tggttgagtt agaccttggc ggcagttccc
     3001 ggtatgtggt ggcgtgacgg gtgagatggt gcggcgaaga cgcatacgtc acgcaggcgc
     3061 gggttcttcc accgacgcgc cccgtgatcg atggccttgg ctccgtccgg catatcgaga
     3121 gcggcaaact acccgt
//
