LOCUS       NZ_CP100751             2109 bp    DNA     circular CON 23-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Montevideo strain
            R17.4849 plasmid pR17.4849_2.1k, complete sequence.
ACCESSION   NZ_CP100751
VERSION     NZ_CP100751.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29431221
            Assembly: GCF_024266285.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Montevideo
  ORGANISM  Salmonella enterica subsp. enterica serovar Montevideo
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Teng,R.H.
  TITLE     28 Salmonella enterica strains that have azithromycin resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Teng,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2022) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: flye v. 2.9; trycycler v. 0.5.3; medaka v. 1.6.0;
            homopolish v. 0.3.3; polca v. 4.0.5; polypolish v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 252x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/23/2023 02:08:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,632
            CDSs (total)                      :: 4,508
            Genes (coding)                    :: 4,371
            CDSs (with protein)               :: 4,371
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 60 of 137
            Pseudo Genes (incomplete)         :: 94 of 137
            Pseudo Genes (internal stop)      :: 25 of 137
            Pseudo Genes (multiple problems)  :: 38 of 137
            Pseudo Genes (short protein)      :: 1 of 137
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP100751.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Salmonella enterica subsp. enterica serovar
                     Montevideo"
                     /mol_type="genomic DNA"
                     /strain="R17.4849"
                     /serovar="Montevideo"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:115981"
                     /plasmid="pR17.4849_2.1k"
                     /geo_loc_name="Taiwan: Taipei City"
                     /collection_date="2017"
                     /collected_by="Centers of Disease Control, Taiwan"
                     /subtype="ST4"
     gene            447..770
                     /gene="yecR"
                     /locus_tag="NL707_RS23150"
                     /old_locus_tag="NL707_23150"
     CDS             447..770
                     /gene="yecR"
                     /locus_tag="NL707_RS23150"
                     /old_locus_tag="NL707_23150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000716773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecR family lipoprotein"
                     /protein_id="WP_016245705.1"
                     /translation="MKKLVAIGLGVLILSGCATQKQMTPMGGSKADGTVKMGYTFGMFE
                     KPVVDLNSAKDLAGQKCKTWGYTGAEAFGGQTSTCAQVGAYGCEMTNVSIEYQCTGGKA
                     SEN"
                     /name="yecR"
     gene            complement(1560..1709)
                     /locus_tag="NL707_RS23155"
                     /old_locus_tag="NL707_23155"
     CDS             complement(1560..1709)
                     /locus_tag="NL707_RS23155"
                     /old_locus_tag="NL707_23155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_162846302.1"
                     /translation="MPSEYDEQRGSTDTQLPGEYDLFDLMAKVTEEILHAPVDSGPPVG
                     REAL"
                     /name="hypothetical protein"
     Typing          complement(1703..1918)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="90.826"
                     /coverage="100.0"
                     /evalue="3.36e-76"
ORIGIN
        1 tgtcactacc agcttaatac cattcaacga cattaaatcc acatctgcac ctaagacgct
       61 caggtctacg ccccggactc cggcaggata aacaggcaat tggtggaaac gtaacttaac
      121 cgcgaaagag ttaagctcta ccccgtctcg cagtacgata actggcacct gataaaatga
      181 gcgaaaaagg cagcagtacg cggtgatgtg agagacgtcg gacacaacac ccacacaatc
      241 aagccggttg cgcggcaaga aaaacaaaac aagagctaga cgaaggtcgc tccgctcccc
      301 gtatttttat atacccacca cgggggcatt aggctttctt tgattttttt atgggatacc
      361 tcaaataatc agaggattac agagggtgtt gccttgtgta aacttcccgt taagataatt
      421 ccgaacaatc atccgggaaa taaaaaatga aaaaactagt agcgatcggt ttaggcgttt
      481 taattctttc aggctgcgca acgcaaaaac aaatgacccc gatggggggg agtaaagctg
      541 atggtacagt gaaaatgggt tacacctttg ggatgtttga aaaacccgtt gttgatctga
      601 actcagctaa agatctggct ggacaaaaat gtaaaacatg gggatacact ggggctgagg
      661 catttggcgg ccaaacatcc acctgcgcac aggtcggggc ttatggttgt gagatgacca
      721 acgtttcaat cgagtaccaa tgcaccggtg ggaaagcttc agaaaactaa gttcaacatt
      781 taccataaca tctgttgcgt gcaccgccgc agaggccctc agcgcgtttc tgaggcctcc
      841 ggcctgaaac acacaccttt ctgtgcccat atcgagaaaa aacgcccctg atgattctgg
      901 cgcgactgca tggctatgca cggacatacc tggccgggat tttagcggct aaaatccgat
      961 gaacgccctg aaagccacca cgaaccaccc cgataacggt gaacggatgc gcaatttatt
     1021 gcgtggccgt gaggcgttgc cggcacagcc ggaaaaacca ttttcagcac gtgcaggagg
     1081 cccaggaaga ggggcggatg tacgaatagt tcagaggtca gatctgacgt aaaaatgatg
     1141 taaaagtgac gtaaaagtga tgtaattttg atgtactttt gatgtaattc tgttgtacac
     1201 ccgcgatctg acgtaaaagt gatgtaattt tgatgtactt ttgatgtaat tctgtagtca
     1261 ggaagaataa cccgttcatg caggcatgaa cgatacagtg aggaacgctt tttttgtcac
     1321 gatctcccct taacctgcgt aaatcaccct ccatagttga ttatttttca acctcaaaat
     1381 agtcatacac ctaacgcagc cgcgattttc atcgcaactg catgaattaa aagaaaaaaa
     1441 atgaatgttt cattttcacg agtaataccc aggtattaaa aacacactgt aattacatga
     1501 aaataaagaa ataaaaggta ataccggcgt attaccacgt acgcgggcaa gcgaaaaagc
     1561 tataacgctt cccggccgac aggcggccca gaatccacag gggcatgcag gatctcttca
     1621 gtaaccttcg ccattaaatc aaaaaggtca tattcgccgg gaagctgcgt atcagtcgaa
     1681 ccccgttgtt catcatattc agatggcatg gggtgatatc cagtagcaga gagattgtta
     1741 gcgggtttcg gggcgcagcc ctgaaccagt cacgtagcgc tagcggagtg tatactggct
     1801 taatatggta aagcgaagtg ggaattcagg gaagtgcttc atgtggcagg ggaaaaatgt
     1861 agctgcgggg cgtaagtgca acatgcaggt aaggatgaaa tgtcgcctcc tcgctcactc
     1921 ggtcgctgcg ctcctgccgt gagactgcgg cgggcgttac ataagttctg aagggatgtt
     1981 tttgattctc gggcgctaaa tgtacaaaag ccccgtgaca gaatcacagg gcttcggtac
     2041 tctaattctt cgcagatgcc tgccaggaat agacgtcaga aatcaaatcc tagcagggct
     2101 ggctagcct
//
