LOCUS       NZ_CP100750             2965 bp    DNA     circular CON 23-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Montevideo strain
            R17.4849 plasmid pR17.4849_3.0k, complete sequence.
ACCESSION   NZ_CP100750
VERSION     NZ_CP100750.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29431221
            Assembly: GCF_024266285.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Montevideo
  ORGANISM  Salmonella enterica subsp. enterica serovar Montevideo
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2965)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Teng,R.H.
  TITLE     28 Salmonella enterica strains that have azithromycin resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2965)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Teng,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2022) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: flye v. 2.9; trycycler v. 0.5.3; medaka v. 1.6.0;
            homopolish v. 0.3.3; polca v. 4.0.5; polypolish v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 252x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/23/2023 02:08:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,632
            CDSs (total)                      :: 4,508
            Genes (coding)                    :: 4,371
            CDSs (with protein)               :: 4,371
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 60 of 137
            Pseudo Genes (incomplete)         :: 94 of 137
            Pseudo Genes (internal stop)      :: 25 of 137
            Pseudo Genes (multiple problems)  :: 38 of 137
            Pseudo Genes (short protein)      :: 1 of 137
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP100750.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2965
                     /organism="Salmonella enterica subsp. enterica serovar
                     Montevideo"
                     /mol_type="genomic DNA"
                     /strain="R17.4849"
                     /serovar="Montevideo"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:115981"
                     /plasmid="pR17.4849_3.0k"
                     /geo_loc_name="Taiwan: Taipei City"
                     /collection_date="2017"
                     /collected_by="Centers of Disease Control, Taiwan"
                     /subtype="ST4"
     gene            complement(join(2956..2965,1..311))
                     /locus_tag="NL707_RS23135"
                     /old_locus_tag="NL707_23135"
     CDS             complement(join(2956..2965,1..311))
                     /locus_tag="NL707_RS23135"
                     /old_locus_tag="NL707_23135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004028395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="WP_061341652.1"
                     /translation="MKKTFALAAMMAAIAPNLASAADKMIQTKYACEGGKTLDVVYVGD
                     YAVMLQMDELVPLKRAKSASGVRYISTSKNHSYELWGKNNDMNLSTHDGGKKQVVLSNC
                     KP"
                     /name="MliC family protein"
     gene            complement(<346..894)
                     /locus_tag="NL707_RS23140"
                     /old_locus_tag="NL707_23140"
                     /pseudo=""
     CDS             complement(<346..894)
                     /locus_tag="NL707_RS23140"
                     /old_locus_tag="NL707_23140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001722544.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     gene            1955..2929
                     /gene="mobV"
                     /locus_tag="NL707_RS23145"
                     /old_locus_tag="NL707_23145"
     CDS             1955..2929
                     /gene="mobV"
                     /locus_tag="NL707_RS23145"
                     /old_locus_tag="NL707_23145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_061341651.1"
                     /translation="MAAYAIMRCKKLSGMGSVAAALQHCYRERETPNADAERTPDNEHR
                     AATSTDAAMGRLRELLPEKRRKDAVLAVEYVMTASPEWWAKATPQQQAAFFDQAQGWLA
                     AKYGADRIVTASIHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRDKMRADQTSFAEVVR
                     DLGLERGIEGSRATHQRVQSYYGAIERQPGHATITPQAIEPRVLRKGIFSKDVETPEAV
                     AARVTAAVREGYGPTVAAAAGARQEREKARQAQETARSLRDRLKPVLDALGPLNRDMQA
                     KAAQIIKAVGEKLLAEQREATRQRQAQRLRSRGRDRDDGGLSR"
                     /name="mobV"
ORIGIN
        1 cagttactga gaacgacttg cttttttccg ccatcgtggg ttgaaaggtt catgtcgttg
       61 ttcttccccc agagttcgta ggagtggttt ttgctggtag agatgtagcg tactcctgat
      121 gcactcttgg cgcgtttcag cgggacaagc tcatccattt gcagcatcac ggcatagtct
      181 ccgacgtaca cgacatccaa cgtctttccg ccttcgcaag cgtacttggt ctggatcatc
      241 ttatccgccg ctgaagcaag attcggagcg attgccgcca tcatggcagc aagagcgaac
      301 gtttttttca taaagatttt ctccttcgtt tcgttgctca ttgtggggag tgccttcaaa
      361 catgtccagc gtgttcgggt cgcggtcgtc gtttggccgc tcttccgggc tgaacatcga
      421 catgatccgg cggcggatat cgccgtcctt gttgaccaag gttttggtca cgaaggccgc
      481 gtattccttg gcgttgtcgt agcccttcca gacctcgtga gggtccagcg cgtaggcgca
      541 aactcggcca gcgacaggga tgcggacaag cgcccggttt tcttccaggt aggcgagcca
      601 agaccggata gtcctggtag tcaccttcat gtgatcggcc aaaaactgct gatcgcagat
      661 caccgcgcca caagtcgggt cgatgtgctc ggcaaagagg gcgtacagac cggcagcgcc
      721 tgaattgccc gtagcaagct cccgtacgcg cctccaaccc ctcgaataca cctgtgtgaa
      781 ccccttgttc ttccgcgctt cctcgcgctc ctgagcctct ttctcgtcca gcatggccag
      841 ctcgcgctgg cgaatacgcc gttgagcgtc cgtcgctacc gtgatctgct gcatgggcat
      901 cccctcaaac cggaaacact gcatccggac aatcggacgt cagcttccta ttggtggaaa
      961 ttctattccg agtcgacagt cctatgcaag gatttttttt tcctattata ggaagtgagc
     1021 ggaagcaagc tgcttccggt tgtccggaag ccctgcttcc tattacatcc gcctaactta
     1081 ttgtttttat tcaaaatcag tatttttccc ttctcctcta aggggctgcc gccccgccgg
     1141 cggccgctgc gcggccttgg caccccgctg acggcccctg cggggcctct gaaaaaggcc
     1201 acccggccgg tggccgggtg acgttgtttg tggggcctcc ggcggccgct gcgcagcctt
     1261 ggggcggtgg gcgctgcccc ccgccacccc ccgcgttcgc cacgtggcag gggtgcaggg
     1321 gctacgggcc tgcggccctt cactcctgca cccctaccgg ggagcgtggg tcgttccagg
     1381 cgcgtcaagg gccgctgcgc tctccggggg tggcccgtgt cctcgccctg cgggctgcgg
     1441 gccgcgccag ccaccccctg cgcccttgac ccgccttcca ctccggcgct gtcggaaatt
     1501 tcctacccgg ccatgaggcg atttccgaca cgccagcggg ccactggctg acgccttcag
     1561 cggagggcag ggtcaagggc gcgcccgcag gccgcagccc ggagcgaagc gcagggaccg
     1621 ggcgaggacg cgggcgaagc cgaacccttg acgctgaccg cagcgcccca gcctgtgcga
     1681 gtgggggcag ggacgaaggg cgaagcccgc cacccctgcc ccccgagcct cccggcggcg
     1741 agggtgggga gtccagaggg gcaaagcccc tttgggcaag gccgaaggcc gccgcaggag
     1801 caagcccgaa gggcgctgca accgccgcag gcgggcacga ctttgcgaag caaagtctag
     1861 tgagtacact atcatctgat agtggcccgc cggaggcacc gccttgcgct gccccgactg
     1921 gccggattcg gacaccaaga ggggaggggc aagcatggcg gcctacgcga tcatgcgatg
     1981 caagaagctg tcggggatgg gcagcgtggc ggcggcgttg cagcactgct accgggagcg
     2041 cgagacgccc aacgctgacg ccgaacgcac gccggacaac gagcaccggg cggccacctc
     2101 gaccgatgcg gcgatggggc ggctgcgcga gttgctgccg gagaagcggc gcaaggacgc
     2161 ggtgctggcg gtcgaatacg tgatgacggc cagcccggaa tggtgggcca aggccacgcc
     2221 ccagcagcag gccgcgttct tcgaccaggc gcagggctgg ctggcggcca aatacggcgc
     2281 ggatcgcatc gtgacggcca gcatccaccg cgacgaggcc accccgcacc tgtcggcctt
     2341 cgtcgtgccg ctgacgcagg acgggcggct gtcggccaag gagttcatcg gtggccgcga
     2401 caagatgcgg gccgaccaga ccagctttgc cgaggtggtg agggatctcg ggctggaacg
     2461 cggcatcgag ggcagccggg ccacccatca gcgcgtccag agctactacg gcgccatcga
     2521 gcgccagccc gggcacgcca ccatcacgcc gcaggccatc gagccgcggg tgctgcgtaa
     2581 ggggattttc tcaaaggacg tggagacgcc ggaggccgtg gccgcccgcg tgaccgctgc
     2641 cgtcagggaa gggtatggcc cgaccgtcgc agcggccgca ggagcgcgtc aggagcgcga
     2701 gaaggcccgg caggcacagg agacagcccg gagcctgcgt gaccgcctga agcccgttct
     2761 ggacgctctg gggccgctta atcgcgatat gcaggccaag gcggcccaga tcatcaaggc
     2821 cgtgggcgag aagctgctcg ccgaacagcg cgaggcgaca cgccagcggc aggcccaacg
     2881 gcttcgcagt cgcggccggg atcgcgacga cggcgggctg tctcgttgac cctacaggtg
     2941 gctaacggaa ggtgtttatg gcttg
//
