LOCUS       NZ_CP100749             3428 bp    DNA     circular CON 23-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Montevideo strain
            R17.4849 plasmid pR17.4849_3.4k, complete sequence.
ACCESSION   NZ_CP100749
VERSION     NZ_CP100749.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29431221
            Assembly: GCF_024266285.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Montevideo
  ORGANISM  Salmonella enterica subsp. enterica serovar Montevideo
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3428)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Teng,R.H.
  TITLE     28 Salmonella enterica strains that have azithromycin resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3428)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Teng,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2022) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: flye v. 2.9; trycycler v. 0.5.3; medaka v. 1.6.0;
            homopolish v. 0.3.3; polca v. 4.0.5; polypolish v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 252x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/23/2023 02:08:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,632
            CDSs (total)                      :: 4,508
            Genes (coding)                    :: 4,371
            CDSs (with protein)               :: 4,371
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 60 of 137
            Pseudo Genes (incomplete)         :: 94 of 137
            Pseudo Genes (internal stop)      :: 25 of 137
            Pseudo Genes (multiple problems)  :: 38 of 137
            Pseudo Genes (short protein)      :: 1 of 137
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP100749.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3428
                     /organism="Salmonella enterica subsp. enterica serovar
                     Montevideo"
                     /mol_type="genomic DNA"
                     /strain="R17.4849"
                     /serovar="Montevideo"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:115981"
                     /plasmid="pR17.4849_3.4k"
                     /geo_loc_name="Taiwan: Taipei City"
                     /collection_date="2017"
                     /collected_by="Centers of Disease Control, Taiwan"
                     /subtype="ST4"
     gene            286..549
                     /locus_tag="NL707_RS23115"
                     /old_locus_tag="NL707_23115"
     CDS             286..549
                     /locus_tag="NL707_RS23115"
                     /old_locus_tag="NL707_23115"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_138627904.1"
                     /translation="MPLEQAAFLFSGVGGMLLTEMEISNTRNITLIARRLAWINAKRTH
                     IDIPSFAELLFSGQKALFFEQYNYFHSRRYTTAGTSKPPDLP"
                     /name="hypothetical protein"
     gene            741..929
                     /locus_tag="NL707_RS23120"
                     /old_locus_tag="NL707_23120"
     CDS             741..929
                     /locus_tag="NL707_RS23120"
                     /old_locus_tag="NL707_23120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_024157493.1"
                     /translation="MNRQESAVLNIAKFIRAQTLLLLERIDLLDFDDEATDCEQLHEQA
                     EALYRKLSARLESDITA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(<1494..1589)
                     /locus_tag="NL707_RS23125"
                     /old_locus_tag="NL707_23125"
                     /pseudo=""
     CDS             complement(<1494..1589)
                     /locus_tag="NL707_RS23125"
                     /old_locus_tag="NL707_23125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /name="plasmid mobilization relaxosome protein MobC"
     gene            2478..3175
                     /locus_tag="NL707_RS23130"
                     /old_locus_tag="NL707_23130"
     CDS             join(2478..2727,2727..3175)
                     /locus_tag="NL707_RS23130"
                     /old_locus_tag="NL707_23130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558153.1"
                     /ribosomal_slippage=""
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
                     /protein_id="WP_094106546.1"
                     /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTY
                     TASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHFKKLRPQSVTSRIQPGSDVIV
                     CAEMDEQWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVW
                     MTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVI
                     GHYLNIKHYQ"
                     /name="IS1 family transposase"
     Typing          complement(1696..1780)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.954"
                     /coverage="100.0"
                     /evalue="1.43e-25"
ORIGIN
        1 atctctggct aaatcgccgc tctattcccg ttcccgttca cctgtaaagg gcatgcaggt
       61 ctctcaatac gtggtgtaac acatatcgcc ttcaccgaaa tgatgtgaag acttcatcat
      121 tttagcaatc acaggttgcc ctaatcactt aacgttatta ttgttctatt gaagccttaa
      181 cctaaaccca ctcacaaaac gtggattatc tggttagtga ttcgcagcaa caaagcgtcc
      241 cggttcaaaa cgaatcgtaa gacgtagttt cccttgatgt agggcttgcc gctggaacag
      301 gcggcttttt tattctccgg cgtggggggg atgctgttga cagaaatgga aataagtaac
      361 acccggaata ttacgcttat tgcccggcgt cttgcctgga ttaatgccaa aagaactcat
      421 atcgatatac catcgtttgc agaactgctt ttctccggcc aaaaagcgct gttcttcgaa
      481 caatataatt attttcactc acgacggtac acaacggcag gcacgtcaaa gccaccggat
      541 ttaccataac atccgttgcc cgcaccgcct caggcgccct cagggcgttt ctgacggcgg
      601 tacggtaaaa caggtaacaa accacccgaa aagccgccag aaacgtgcca ggtaaatttt
      661 aacgccatgc atgactatgc accagaatga cggcatcctg ttttcacatc aaaatcatca
      721 caagacacag gaaaacacac atgaaccgcc aggaatccgc cgttctcaac atagctaaat
      781 ttatccgcgc ccagacactc ctcctgctgg aaagaattga cctgctcgac ttcgatgacg
      841 aagcgacaga ctgcgaacag ctgcatgagc aggccgaagc gctttaccgg aagctcagcg
      901 cccgactgga atcagacata acggcttagc ctttccgtcg cctgcatcat ggcatccaca
      961 tcatcttttg agagatcttc atcctccagt cgtcgctcaa ggatgaacgg acacggaatt
     1021 tattacgggt cgtgaggcac tcagtatgaa agaaaaatgc agacaataca gactggaact
     1081 gtaagcaagc agtgacgaga ttaaaaatca ggataaccag agacggtatt tccgagactc
     1141 agagaggtaa tcaatacggt taaatgcccc gggatataat gcactaacga cacgccagaa
     1201 atgtatctgg gtcagctcat ctgccccacc ttccctgatg tcagaaagta cctcgtcgta
     1261 agtctttcct tcctcgcggg ctacaatcct catcgtgtcc cttgcaaggc gatcagtaca
     1321 ccctccgaaa atcagaacat caataaacac gaagtccctt ccggtaagaa aaaaaaccgg
     1381 cacgggagcc ggtaatactg tgaaaaacag cccgctttag catcgcggtt aatagtgaca
     1441 tgttatgcca ttgagcagag atataagcac ccaccaaaac taggaggaac agacatagca
     1501 gacgggcgca cccatgcaga aagctgtgta cccccgcagc gttccagcag tagccggtac
     1561 tcatcctccg tcacccacat ggtgagtatc ttgttccgtt tctcggacaa accagtctcc
     1621 tgataacgcc gtgacgggcg ggaaaccctt tcccggtcgg cgcggggttg gacaagccgc
     1681 aggcgcgtca ggcttttggc gggtttcggg gcgcagccct gaaccagtca catagcgcta
     1741 gcggagtgta tactggctta tctattttaa cactgtgcgg aaattgacag aaatcgggct
     1801 atgtggcaga ggaaaatgcg gcttcgaagc ataagcagaa tgatgggcgg acggtgaaaa
     1861 tgacgcctcc tcgctcattc gctcactacg ttcggtcatg aagctgtggc gggcgttgcg
     1921 gtgatctgac tgagtgataa tgatttttct ggctctagat gtacaaaagc cccgtgacag
     1981 aatcacaggg cttgagtact ctaattcgtg cagatacctg ctcggatcag accgcaatca
     2041 aatcctagca gggctggcta ggaatgtcac taccagctta ataccattca acgacattaa
     2101 acccatatct gcaccttgac tctcaggtct acgccccgga ctccggcagg ataaacaggc
     2161 aagcggtggg aacctgacca gctcgggaaa gaagctggct ctacccggtc tcacgttaac
     2221 caataacgta cctgataaag tgagagtgaa ggcagcggtt gcggtgaagc gtgattgcca
     2281 aggtctggcg caacacccac aaaatcgaag cagcatacga acggcctgat gctggtcgct
     2341 tcgctccccg ttttctggtg tacccaccac gggggcatta ggctttcttt gccctaatat
     2401 gggtttgcga ctctcaaatc cgggtaatgc tgccaactta ctgatttagt gtatgatggt
     2461 gattttaagg tgcttgcgtg gcttccattt ccatcagatg tccttcctgc tccgctactg
     2521 aaggcgtggt gcgtaacggc aaaagcactg ccggacatca gcgctatctc tgctctcatt
     2581 gccgtaaaac atggcaacta cagttcactt acaccgcctc tcagcccggt acgcaccaga
     2641 aaatcattga tatggccatg aatggcgtcg gatgtcgcgc cagtgcacgc attatgggcg
     2701 ttggcctcaa cacggtttta cgtcacttaa aaaactcagg ccgcagtcgg taacctcgcg
     2761 catacaaccg ggcagtgatg tgattgtctg cgctgaaatg gacgaacagt ggggctacgt
     2821 cggtgctaaa tcacgtcagc gctggctgtt ttacgcgtat gacaggatac ggaggacggt
     2881 tgtggcgcac gtcttcggtg aacgcactct ggccacactg gagcgtcttc tgagcctgct
     2941 gtcggccttt gaggtcgtgg tatggatgac ggatggctgg ccgctgtatg aatcacgcct
     3001 gaagggaaag ctgcacgtta tcagcaagcg atatacgcag cgcattgagc gacataacct
     3061 gaatctgaga caacatctgg caaggctggg acggaagtca ctgtcgttct caaaatcggt
     3121 ggagctgcat gacaaggtca tcgggcatta tctgaacata aaacactatc agtaagttgg
     3181 agtcattacc catcacgatg actaaaaaac aagcaatttg agtaaacaaa tatacgcctg
     3241 acatatttgt ttactcatga aataatatag ccacaataat aactggtgta ttttttttgg
     3301 ctcccggtga tgtcaggggg ccaacttttt gaaaattatc ataaacatca gataaaacga
     3361 attgcaaagg ttaaaaaaat accgccagtt ataataattg tgatatgaat tacagtgtta
     3421 tgaaaccc
//
