LOCUS       NZ_CP100721             4245 bp    DNA     circular CON 23-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Weltevreden strain
            R17.4942 plasmid pR17.4942_4.2k, complete sequence.
ACCESSION   NZ_CP100721
VERSION     NZ_CP100721.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29431223
            Assembly: GCF_024266505.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Weltevreden
  ORGANISM  Salmonella enterica subsp. enterica serovar Weltevreden
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4245)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Teng,R.H.
  TITLE     28 Salmonella enterica strains that have azithromycin resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4245)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Teng,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2022) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: flye v. 2.9; trycycler v. 0.5.3; medaka v. 1.6.0;
            homopolish v. 0.3.3; polca v. 4.0.5; polypolish v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 813x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/23/2023 02:10:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,997
            CDSs (total)                      :: 4,878
            Genes (coding)                    :: 4,689
            CDSs (with protein)               :: 4,689
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 189
            CDSs (without protein)            :: 189
            Pseudo Genes (ambiguous residues) :: 0 of 189
            Pseudo Genes (frameshifted)       :: 69 of 189
            Pseudo Genes (incomplete)         :: 136 of 189
            Pseudo Genes (internal stop)      :: 25 of 189
            Pseudo Genes (multiple problems)  :: 37 of 189
            Pseudo Genes (short protein)      :: 1 of 189
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP100721.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4245
                     /organism="Salmonella enterica subsp. enterica serovar
                     Weltevreden"
                     /mol_type="genomic DNA"
                     /strain="R17.4942"
                     /serovar="Weltevreden"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:57743"
                     /plasmid="pR17.4942_4.2k"
                     /geo_loc_name="Taiwan: Kaohsiung City"
                     /collection_date="2017"
                     /collected_by="Centers of Disease Control, Taiwan"
                     /subtype="ST365"
     gene            join(4221..4245,1..563)
                     /locus_tag="NL732_RS24960"
                     /old_locus_tag="NL732_24960"
     CDS             join(4221..4245,1..563)
                     /locus_tag="NL732_RS24960"
                     /old_locus_tag="NL732_24960"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_011017200.1"
                     /translation="MIRNIFFASAIVVAISGCTAMDKLAGMGVVSQQTSTFDNSTVIDV
                     SPNSLYDPNSTWGTQLQLGAIWSSSQPDQVGLILSYNSNVSNGSSAYLGFIGIDINIDG
                     KISSYKAQQLTNLSNSGYNTVSKTIYTSSKNTVVIPYEVLEKMVSAKNCRLRIHTTEGN
                     QDIDFSAASIPGGKATAIVSIKEFMTKVAKVK"
                     /name="hypothetical protein"
     gene            complement(793..1311)
                     /locus_tag="NL732_RS24965"
                     /old_locus_tag="NL732_24965"
     CDS             complement(793..1311)
                     /locus_tag="NL732_RS24965"
                     /old_locus_tag="NL732_24965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_011017199.1"
                     /translation="MKCFWACSVSVVLVMSFTVASAENITHTKPLARSDLYLTCKGYQV
                     KGASVINVEKPSYLEGTGEQVEFAIISLGDASDGLKVFFDSWGFSPFGLIESHVMHEHW
                     SLVHVGGRVSVKGEKIDYSFVDNQPQEGGSYKPKTGVFLYGCINSDKRPSWVEKIYTRT
                     GVFRGGIED"
                     /name="hypothetical protein"
     gene            complement(1440..1655)
                     /locus_tag="NL732_RS24970"
                     /old_locus_tag="NL732_24970"
     CDS             complement(1440..1655)
                     /locus_tag="NL732_RS24970"
                     /old_locus_tag="NL732_24970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_058671277.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSDQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1659..2144)
                     /locus_tag="NL732_RS24975"
                     /old_locus_tag="NL732_24975"
     CDS             complement(1659..2144)
                     /locus_tag="NL732_RS24975"
                     /old_locus_tag="NL732_24975"
                     /inference="COORDINATES: protein motif:HMM:NF016710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_023139312.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMVRMVSQTWLTIVLVSALLTASGASILWWQGQQIL
                     DNYTTIREQKRTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<2179..2613)
                     /locus_tag="NL732_RS24980"
                     /old_locus_tag="NL732_24980"
                     /pseudo=""
     CDS             complement(<2179..2613)
                     /locus_tag="NL732_RS24980"
                     /old_locus_tag="NL732_24980"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2822..3145)
                     /locus_tag="NL732_RS24985"
                     /old_locus_tag="NL732_24985"
     CDS             complement(2822..3145)
                     /locus_tag="NL732_RS24985"
                     /old_locus_tag="NL732_24985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001347450.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSL
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(3260..3432)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.828"
                     /coverage="100.0"
                     /evalue="9.34e-71"
     Typing          3357..3902
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.078"
                     /coverage="90.0"
                     /evalue="0.0"
     Typing          complement(1349..2832)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.313"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ctgcgatcgt agtagccatc tctggctgta cagcaatgga taaactggcg ggaatgggtg
       61 tggtttctca acaaacatcc acttttgaca actcaactgt catagatgtc tctccaaatt
      121 cgctatacga cccgaacagc acttggggaa cacaacttca gttaggagca atatggtcca
      181 gctcccaacc agatcaagta gggctgatcc tttcctacaa ttcaaatgta tctaatggaa
      241 gttccgcata cttaggtttc ataggaatag atataaatat tgatggcaag atatctagct
      301 ataaagcaca gcaactaact aatctaagta acagtggata caatactgta tccaaaacga
      361 tctacacatc cagcaaaaat accgttgtta tcccatatga agtgctagaa aagatggtgt
      421 cggctaaaaa ctgccgcctt cgcatacata caactgaagg taatcaagac atcgatttct
      481 cagctgcaag tatccctggg gggaaagcta ctgcgattgt ttccattaaa gaattcatga
      541 ctaaagtggc aaaagttaaa taggtaacta agccgccatt acaggcggca cttcacacta
      601 tttaccataa catcccttgg gcgcaccgct cagacgcgct cagggcgttt ttccgtcctg
      661 agccacaaaa gagcccgtct tctcaccgaa aaccgcccgg aatcgcgctg ataagttttg
      721 cgtgtatgca tagccatgca cgaaaatgaa ctaacactct gttcaatgaa ttttcatgct
      781 gtacgcagta ttttagtctt ctatgccccc tcgaaacacg cctgttcttg tgtagatttt
      841 ttcgacccaa gatggccttt tatcagagtt aatgcagcca tacaggaaca cacctgtttt
      901 gggtttatag ctcccaccct cctgtggctg gttatctaca aatgaataat caatcttttc
      961 acccttgact gaaacacgcc ccccaacatg aactaaagac cagtgctcat gcattacatg
     1021 actttcaatc aatccaaaag gagaaaaacc ccatgaatca aaaaaaacct tgagtccatc
     1081 agatgcatca ccgagagaaa tgattgcaaa ctcaacctgc tcacctgtac cttcaaggta
     1141 agaaggtttc tcgacgttaa ttacagacgc ccccttcacc tgataacctt tacaggtaag
     1201 atataagtcg ctcctggcta acggttttgt gtgtgtaatg ttctccgcag aagcgactgt
     1261 aaatgacata accaaaacta ctgagactga gcaagcccag aaacacttca taacgcatcc
     1321 cttttcattg attaactaca ttccaagctc aaaacctttc tgccgctgcg atcgttccag
     1381 ctccagcgtt ttctgatgct gcgccgcccg ctcctgctgc ctgtgtgctt caatcgagtt
     1441 cagcctttcg acaaccggcg cagctgatcg ctcaaactct gcacctgcct gctcaagccc
     1501 gtgacgcgct cgctcagcgc cgcgttctcc cgttgcataa gaccagacat cgtccgccat
     1561 tccgcgaagg cgttctccca ctcgtccagc cttttcgagt agtcctgctg tagctgctct
     1621 aatgcgctca gcaactgttt ttccagctcc gtcatgtgct atttccccgc cagtatcatc
     1681 cagctcgaat cctctccgaa ccgtcccgct tccgggttca ccctcacgca gcggcgtctc
     1741 tgctctccgc aggtcgagag ctgcacgccg ctgttcctct cggacagcat ggcctgcgtg
     1801 cgcttctgct cccggatagt cgtgtaattg tcgagtatct gctgcccctg ccaccacaga
     1861 atgcttgcgc ccgatgctgt cagcagtgca gacaccagga cgatggtcag ccacgtctgg
     1921 ctgaccatac gcaccatgcc tttcgtgcgc tggctcatgg ctgaggacag cttccggtcg
     1981 tggtcgagga tggcggcgct gattctcttc tcgctttcgc tcagttccgc tctgacagac
     2041 ttctcgtgct cgctgaatgc ggctttcagc atctcgccgg tactctgctg ctgcgctttc
     2101 gatttctgct ctaagtcctt tgccagcgtt aaaagactgt tcatagatgg ctcccttcag
     2161 tcggatgttt cgccccccgt ccgggtcggc aatgctgatg ctgctttttg tggtgcgtac
     2221 cacctcaaaa cctgcgcttt ccagcgcctc agtgacgtcc tggcgggttt tcagctcccc
     2281 ggacgaggct aaggccagta aaccccgtgt aattgcctga gcggcttcct gcttcgtttc
     2341 cggcagcgcg gacggcgtga ccagcgcccg ccggttttca ggcgcgttcg ggtcatgcag
     2401 ccccagcctg ccgttcacga tggtctgcca ggcatcaatg cgcggacggt cggcgcggtc
     2461 gtaatacggc tggagacgcc tgccggtcag cagctccgtg ttcgggatca ggaagttcag
     2521 ctccagccgc cccttatcct ggtgctcaac ccacaacacg ctgtactggt ctttatcgag
     2581 tccgggcatc agaacccgtt caaagctcgc catcagcttt tcgcgctgcc cgggcggtaa
     2641 atccttttcg gcaaaggaca ggacgccgga tgtgtacttt tttgcgtagg gcgaggcgtc
     2701 gataagctcc ctgacttctt ccggcttccc ctgcagaacg gtggcgccgt cgcgctgtcg
     2761 gtctttcccc agcagataat ccaccggacc ggcgccaccg ccgcgccctc gcgggtgaaa
     2821 cttaacgatc atcgtctgca cccttttcca gcacggcatg ccgcagccgc tcgagtccgg
     2881 catctatggc catcagcgcg gcgacgacct gcacgcggtc gtgcccgctg ccaccaccgg
     2941 cgttaacctg ccgggcaatc tggttgaggt tgttccccat gccggcaagc tgacgaagca
     3001 gcgccggcga gagcgaggga agcttgccgg cgcgggcggg tttctcgtcc aggcacgtct
     3061 ggcgcatcca ggctgcaagc tgtttaccgt cgcagcgctc cagcagacgg cggtgctcat
     3121 cttcggtcac ccacatcgtg agcattttgc tgcgtttgtc tgccaatccg gcctcctgat
     3181 aacgccggga cgggcgggaa atcttttccc ggtcggcgcg gtgttggaca agccgcaggc
     3241 gcgtcagtgg ttttagcggg tttcggggcg cagccctgaa ccagtcacgt agcgctagcg
     3301 gagtgtatac tggcttacta tgttggcacg ggtgcgggaa tcagtgaagc gcttcatgtg
     3361 gcaggagaaa aatgcagcag cggagcgtaa gcagaatata tgagacagga tatattccgc
     3421 ttcctcgctc actgactcgc tgcgctcggt cgttcggctg cggcgagcgg tgcgggctta
     3481 cgaatagggc ggaagtttcc tggtaaatgc caagaaggaa cttaacaggg aaatgagaag
     3541 gccgcggcga agccgttttt ccataggctc cgcccccctg acaagcatca cgaaatctga
     3601 cgctcaaatc agtggtggcg aaacccgaca ggacttaaag ataccaggcg tttccccctg
     3661 gtggctccct cgtgcgctct cctgttcctg cctttcggtt taccggtgtc attccgctgt
     3721 tatggccgcg tttatctcat tccacgcctg acactcagtt ccgggtaggc agttcgctcc
     3781 aagctggact gtatgcacga accccccgtt cagtccgacc gctgcgcctt gtccggtaac
     3841 tatcatcttg agtccaaccc ggaaagacat gcaaaagcgc cactggcagc agccactgat
     3901 aactgattta gaggagttag tcttgaagtt atgcgccggt taaggctaaa ctgaaaggac
     3961 aagttttggt gactgcgctc ctccaagcca gttacctcgg ttcaaagagt tggtagctct
     4021 gagaaccttc gaaaaaccgc cctgcaaggc ggttttttcg tttcgtggtc aagagattac
     4081 gacgctcgct taaggatctc aagaagatct gcccgtatcc tttcaaaatc cttcttaaaa
     4141 agaaaatcgc gtgcaaaata gtttcggtaa tacgatgctt ttttcactct ctggtaacaa
     4201 gaaaaaaata ggataacgaa atgataagga atattttttt tgctt
//
