LOCUS       NZ_CP100688             3172 bp    DNA     circular CON 23-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Goldcoast strain
            R18.1297 plasmid pR18.1297_3.2k, complete sequence.
ACCESSION   NZ_CP100688
VERSION     NZ_CP100688.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11546981
            Assembly: GCF_024266205.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Goldcoast
  ORGANISM  Salmonella enterica subsp. enterica serovar Goldcoast
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Teng,R.H.
  TITLE     28 Salmonella enterica strains that have azithromycin resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Teng,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2022) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: flye v. 2.9; trycycler v. 0.5.3; medaka v. 1.6.0;
            homopolish v. 0.3.3; polca v. 4.0.5; polypolish v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 224x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/23/2023 02:03:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,819
            CDSs (total)                      :: 4,704
            Genes (coding)                    :: 4,574
            CDSs (with protein)               :: 4,574
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 45 of 130
            Pseudo Genes (incomplete)         :: 93 of 130
            Pseudo Genes (internal stop)      :: 30 of 130
            Pseudo Genes (multiple problems)  :: 34 of 130
            Pseudo Genes (short protein)      :: 1 of 130
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP100688.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Salmonella enterica subsp. enterica serovar
                     Goldcoast"
                     /mol_type="genomic DNA"
                     /strain="R18.1297"
                     /serovar="Goldcoast"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:260678"
                     /plasmid="pR18.1297_3.2k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2018"
                     /collected_by="Centers of Disease Control, Taiwan"
                     /subtype="358"
     gene            complement(1065..1460)
                     /locus_tag="FC640_RS24085"
                     /old_locus_tag="FC640_24085"
     CDS             complement(1065..1460)
                     /locus_tag="FC640_RS24085"
                     /old_locus_tag="FC640_24085"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     gene            1639..2592
                     /locus_tag="FC640_RS24090"
                     /old_locus_tag="FC640_24090"
     CDS             1639..2592
                     /locus_tag="FC640_RS24090"
                     /old_locus_tag="FC640_24090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001360358.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="MobA/MobL family protein"
     gene            2604..3134
                     /locus_tag="FC640_RS24095"
                     /old_locus_tag="FC640_24095"
     CDS             2604..3134
                     /locus_tag="FC640_RS24095"
                     /old_locus_tag="FC640_24095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_140018423.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPAIGKSRKN"
                     /name="hypothetical protein"
     Typing          1640..2589
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aattccgcgt cccgttcacc gttttctgat gagaaagttt gctgttttga cccgttcgcc
       61 cttctgaacg ctcgaaacag atcgcgcatt gctttcgtga atagttatgc aggctcatga
      121 aaacgattct gacgcgtttt ttgaggtagg ggtgggggaa agcatggttt tttgatgttt
      181 tgagcgtaaa agcgtgaaaa atcgcgttat tgtgcttgcg atctttcgtc agggagcgta
      241 gaacgaaaaa agcccgccgt taggcgagct tcttcgggtt cattgaggtt ttcgacctcc
      301 tcaatgttcc tgtggagtct gttgcggcga caacggaaac cagttcattc agtttgcatg
      361 aaccttctgt attcttcaag cattaccgac cgcacagcct ccccagaatc ccgaaaaaat
      421 cctgtttttg cagatgattg cgtgtttgca aagaccgttt gcggttgggg gagctgtgac
      481 gacggcaacc gcacgcgtga gagttccgct accggcgcag agagtttcat cgacagcgga
      541 cacctgatga gttgccacaa aaaccgtatg tagcgcggct agattggttg agttagacct
      601 tggcggcagt tcccggtatg tggtggcgtg acgggtgaga tggtgcggcg aagacgcata
      661 cgtcacgcag gcgcgggttc ttccaccgac gcgccccgtg atcgatggcc ttggctccgt
      721 ccggcatatc gagagcggca aactacccgt cccttcactg ggaggggtga gttgttgccg
      781 ttccctccga ccttccacca tccagcatat cgcacgatcc catgagcacc gcaacaactg
      841 ataactccag agcaaaaaaa aaaaaggatc tgcatcatgt gagagtgatc ccaccgctcg
      901 ccgcagcccc agcgaccgaa cgtagtgagc gagtgggcga ggaagcggaa gtgaaccgga
      961 aaccacattg agcacgtacg cacctatgcc agatccgcgc gtagcgcgtc gcgaaatcga
     1021 aaacattgaa caccggcagg caaacgcacc accacgcagc ggaattaatg atgatctggg
     1081 cttgtttcaa gatcgagcct gattgcctta agtttctgta atatattgtc ttttgggtat
     1141 ctcagttcgc ctgtttttgt gtccactagt ccggcctcga tcagtaaccc cgccgcaaga
     1201 aacaggcggt gattgcgttc ccgtcgttgt gttttcccct ccatccgttt ttggttggcc
     1261 tgtttgcgtg cgttctcctg tgcctgtagc tcgttttttt ctgcggttgc caggacgtgg
     1321 agtagtttgc gctcctgttc tgttagtccg gcttcgttat cgagcaggtc aatgatctgc
     1381 ctctgtcgtg cggtctgttc tccgagcttc ctgataaagc cgattcgttt cttcaaccag
     1441 tcgatgttgc tgatgcgcat gtttgggatg ctccctggtg ttttttgcgg tgtgttgggg
     1501 ttgtgcagta tatcgcttgc ggtcggtggg tgcagggggt atcttccgtg ctaattcgta
     1561 aaattagaag gaagcgcact tatatgtttc ttcgccgttg gctcagaaac atgtgcgctc
     1621 ctgcggaggg ctaacaccgt ggcaacctat cacctcaatg taaaatttgg cggcaaggga
     1681 caggccggaa accatgccga ttacatcgaa cgcaaaggcg agtacgagaa acgaaaagat
     1741 ctggaatact cagagcacgg gaatatgcca ggctgggcgc gagataatcc ctcccatttc
     1801 tggcaagcgg ctgatcagtt tgaacgtgcg aatggttcga cttatcggga gatcgaaatc
     1861 gccttgccgc gtgaactgac accggatcag cgcattgaac tggtgcagga ttttgtgcgt
     1921 caggtagctg gagaacggca cgcctatagc tttgccattc acaatccaaa agcgagcatt
     1981 gacggagggg aacagcctca tgcgcatatc atgatgagcc agcgtattaa cgatggtatg
     2041 gaacgttcgc cggaacagta tttccggcgt tataacgcca agaatcccga acggggaggc
     2101 gcaaaaaaag attcaggcaa tctgacaccg actcagcaaa aagagcaatt gcggacgtta
     2161 cgggcgagct ggtcagcgtt acagaacgag catttagcgc gtcatggtca cagggtgcgc
     2221 gttgaccatc gctcactgga agaacgcgga attaaacgca caccagaacg gcatttcgga
     2281 tttgccgcct catcacggct tgatcatgcg cagcgccgcg aaatcctgca aaaccgagcg
     2341 cagccgctcg aacattttct agagaaagcg cattcggttc gtcatcaatt tgatgcacaa
     2401 gttcagcaaa aagagttagt taaaacgctt ttacaggacg tcgcacggga gcgagggcac
     2461 gcgcttacgg caagaataaa taaaacaggt gaagttgaat ttgaacgtgc gccaacgcgg
     2521 acgcggagta acacgcgagg gcacggcatg ggcattcgtg acaactcacg cgggtacgac
     2581 tacgaacgtt aaaaggggac tgtatggcga gtacagaaga ggggttgctc acgctcttgt
     2641 tgtccgttga gcatttgaaa aacactgcga tagaacaaca gaaagcggtt gcagacacgc
     2701 tggcggtcgc aagggaaaca ctgcgggggt atcgggatat ttctgacagt gttgtaaaac
     2761 aggttagcga tgaagtcaga aaaggggtac agaaaacgga cattgcgggg ctgatgggtg
     2821 agcgcatgac ccaggatttt cagcgtcttg aagagactgt ggcaaagatg agagccaacg
     2881 cggaggcgct taacaaggac attgcgacaa ttcatcacaa tgttgttaaa gaatacaaca
     2941 cgctcaataa atacagtctg aaatggttta tcggtgttac ggtcagtttt ctggtcatgt
     3001 tctcgttgct tggctggttt accaaaacgt tgatcgacag gaactacacc gcgacggagg
     3061 tcgtgtatca gaaaattgtt gatattgaaa agaaactgga caaaccagca atagggaaga
     3121 gccggaaaaa ctgacgcgct tcgcttgtcc aacgcctcac gggacgcgaa aa
//
