LOCUS       NZ_CP100684             3172 bp    DNA     circular CON 23-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Goldcoast strain
            R18.0450 plasmid pR18.0450_3.2k, complete sequence.
ACCESSION   NZ_CP100684
VERSION     NZ_CP100684.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11546974
            Assembly: GCF_024266185.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Goldcoast
  ORGANISM  Salmonella enterica subsp. enterica serovar Goldcoast
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Chiou,cs., Chen,bh., Wang,yw. and Teng,R.H.
  TITLE     28 Salmonella enterica strains that have azithromycin resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Chiou,cs., Chen,bh., Wang,yw. and Teng,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2022) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 105x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/23/2023 02:19:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,728
            CDSs (total)                      :: 4,613
            Genes (coding)                    :: 4,494
            CDSs (with protein)               :: 4,494
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 43 of 119
            Pseudo Genes (incomplete)         :: 83 of 119
            Pseudo Genes (internal stop)      :: 28 of 119
            Pseudo Genes (multiple problems)  :: 32 of 119
            Pseudo Genes (short protein)      :: 1 of 119
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP100684.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Salmonella enterica subsp. enterica serovar
                     Goldcoast"
                     /mol_type="genomic DNA"
                     /strain="R18.0450"
                     /serovar="Goldcoast"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:260678"
                     /plasmid="pR18.0450_3.2k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2018"
                     /collected_by="Centers of Disease Control, Taiwan"
                     /subtype="358"
     gene            join(2783..3172,1..6)
                     /locus_tag="FC623_RS23630"
                     /old_locus_tag="FC623_23630"
     CDS             join(2783..3172,1..6)
                     /locus_tag="FC623_RS23630"
                     /old_locus_tag="FC623_23630"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     gene            complement(1109..1639)
                     /locus_tag="FC623_RS23635"
                     /old_locus_tag="FC623_23635"
     CDS             complement(1109..1639)
                     /locus_tag="FC623_RS23635"
                     /old_locus_tag="FC623_23635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_140018423.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPAIGKSRKN"
                     /name="hypothetical protein"
     gene            complement(1651..2604)
                     /locus_tag="FC623_RS23640"
                     /old_locus_tag="FC623_23640"
     CDS             complement(1651..2604)
                     /locus_tag="FC623_RS23640"
                     /old_locus_tag="FC623_23640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001360358.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="MobA/MobL family protein"
     Typing          complement(1655..2604)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cattaattcc gctgcgtggt ggtgcgtttg cctgccggtg ttcaatgttt tcgatttcgc
       61 gacgcgctac gcgcggatct ggcataggtg cgtacgtgct caatgtggtt tccggttcac
      121 ttccgcttcc tcgcccactc gctcactacg ttcggtcgct ggggctgcgg cgagcggtgg
      181 gatcactctc acatgatgca gatccttttt tttttttgct ctggagttat cagttgttgc
      241 ggtgctcatg ggatcgtgcg atatgctgga tggtggaagg tcggagggaa cggcaacaac
      301 tcacccctcc cagtgaaggg acgggtagtt tgccgctctc gatatgccgg acggagccaa
      361 ggccatcgat cacggggcgc gtcggtggaa gaacccgcgc ctgcgtgacg tatgcgtctt
      421 cgccgcacca tctcacccgt cacgccacca cataccggga actgccgcca aggtctaact
      481 caaccaatct agccgcgcta catacggttt ttgtggcaac tcatcaggtg tccgctgtcg
      541 atgaaactct ctgcgccggt agcggaactc tcacgcgtgc ggttgccgtc gtcacagctc
      601 ccccaaccgc aaacggtctt tgcaaacacg caatcatctg caaaaacagg attttttcgg
      661 gattctgggg aggctgtgcg gtcggtaatg cttgaagaat acagaaggtt catgcaaact
      721 gaatgaactg gtttccgttg tcgccgcaac agactccaca ggaacattga ggaggtcgaa
      781 aacctcaatg aacccgaaga agctcgccta acggcgggct tttttcgttc tacgctccct
      841 gacgaaagat cgcaagcaca ataacgcgat ttttcacgct tttacgctca aaacatcaaa
      901 aaaccatgct ttcccccacc cctacctcaa aaaacgcgtc agaatcgttt tcatgagcct
      961 gcataactat tcacgaaagc aatgcgcgat ctgtttcgag cgttcagaag ggcgaacggg
     1021 tcaaaacagc aaactttctc atcagaaaac ggtgaacggg acgcggaatt ttttcgcgtc
     1081 ccgtgaggcg ttggacaagc gaagcgcgtc agtttttccg gctcttccct attgctggtt
     1141 tgtccagttt cttttcaata tcaacaattt tctgatacac gacctccgtc gcggtgtagt
     1201 tcctgtcgat caacgttttg gtaaaccagc caagcaacga gaacatgacc agaaaactga
     1261 ccgtaacacc gataaaccat ttcagactgt atttattgag cgtgttgtat tctttaacaa
     1321 cattgtgatg aattgtcgca atgtccttgt taagcgcctc cgcgttggct ctcatctttg
     1381 ccacagtctc ttcaagacgc tgaaaatcct gggtcatgcg ctcacccatc agccccgcaa
     1441 tgtccgtttt ctgtacccct tttctgactt catcgctaac ctgttttaca acactgtcag
     1501 aaatatcccg atacccccgc agtgtttccc ttgcgaccgc cagcgtgtct gcaaccgctt
     1561 tctgttgttc tatcgcagtg tttttcaaat gctcaacgga caacaagagc gtgagcaacc
     1621 cctcttctgt actcgccata cagtcccctt ttaacgttcg tagtcgtacc cgcgtgagtt
     1681 gtcacgaatg cccatgccgt gccctcgcgt gttactccgc gtccgcgttg gcgcacgttc
     1741 aaattcaact tcacctgttt tatttattct tgccgtaagc gcgtgccctc gctcccgtgc
     1801 gacgtcctgt aaaagcgttt taactaactc tttttgctga acttgtgcat caaattgatg
     1861 acgaaccgaa tgcgctttct ctagaaaatg ttcgagcggc tgcgctcggt tttgcaggat
     1921 ttcgcggcgc tgcgcatgat caagccgtga tgaggcggca aatccgaaat gccgttctgg
     1981 tgtgcgttta attccgcgtt cttccagtga gcgatggtca acgcgcaccc tgtgaccatg
     2041 acgcgctaaa tgctcgttct gtaacgctga ccagctcgcc cgtaacgtcc gcaattgctc
     2101 tttttgctga gtcggtgtca gattgcctga atcttttttt gcgcctcccc gttcgggatt
     2161 cttggcgtta taacgccgga aatactgttc cggcgaacgt tccataccat cgttaatacg
     2221 ctggctcatc atgatatgcg catgaggctg ttcccctccg tcaatgctcg cttttggatt
     2281 gtgaatggca aagctatagg cgtgccgttc tccagctacc tgacgcacaa aatcctgcac
     2341 cagttcaatg cgctgatccg gtgtcagttc acgcggcaag gcgatttcga tctcccgata
     2401 agtcgaacca ttcgcacgtt caaactgatc agccgcttgc cagaaatggg agggattatc
     2461 tcgcgcccag cctggcatat tcccgtgctc tgagtattcc agatcttttc gtttctcgta
     2521 ctcgcctttg cgttcgatgt aatcggcatg gtttccggcc tgtcccttgc cgccaaattt
     2581 tacattgagg tgataggttg ccacggtgtt agccctccgc aggagcgcac atgtttctga
     2641 gccaacggcg aagaaacata taagtgcgct tccttctaat tttacgaatt agcacggaag
     2701 ataccccctg cacccaccga ccgcaagcga tatactgcac aaccccaaca caccgcaaaa
     2761 aacaccaggg agcatcccaa acatgcgcat cagcaacatc gactggttga agaaacgaat
     2821 cggctttatc aggaagctcg gagaacagac cgcacgacag aggcagatca ttgacctgct
     2881 cgataacgaa gccggactaa cagaacagga gcgcaaacta ctccacgtcc tggcaaccgc
     2941 agaaaaaaac gagctacagg cacaggagaa cgcacgcaaa caggccaacc aaaaacggat
     3001 ggaggggaaa acacaacgac gggaacgcaa tcaccgcctg tttcttgcgg cggggttact
     3061 gatcgaggcc ggactagtgg acacaaaaac aggcgaactg agatacccaa aagacaatat
     3121 attacagaaa cttaaggcaa tcaggctcga tcttgaaaca agcccagatc at
//
