LOCUS       NZ_CP100680             4697 bp    DNA     circular CON 23-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Anatum strain R17.0809
            plasmid pR17.0809_4.7k, complete sequence.
ACCESSION   NZ_CP100680
VERSION     NZ_CP100680.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29431218
            Assembly: GCF_024266145.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Anatum
  ORGANISM  Salmonella enterica subsp. enterica serovar Anatum
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4697)
  AUTHORS   Chiou,cs., Chen,bh., Wang,yw. and Teng,R.H.
  TITLE     28 Salmonella enterica strains that have azithromycin resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4697)
  AUTHORS   Chiou,cs., Chen,bh., Wang,yw. and Teng,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2022) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 212x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/23/2023 01:58:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,685
            CDSs (total)                      :: 4,570
            Genes (coding)                    :: 4,469
            CDSs (with protein)               :: 4,469
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 43 of 101
            Pseudo Genes (incomplete)         :: 74 of 101
            Pseudo Genes (internal stop)      :: 15 of 101
            Pseudo Genes (multiple problems)  :: 28 of 101
            Pseudo Genes (short protein)      :: 1 of 101
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP100680.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4697
                     /organism="Salmonella enterica subsp. enterica serovar
                     Anatum"
                     /mol_type="genomic DNA"
                     /strain="R17.0809"
                     /serovar="Anatum"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:58712"
                     /plasmid="pR17.0809_4.7k"
                     /geo_loc_name="Taiwan: Taipei City"
                     /collection_date="2017"
                     /collected_by="Centers of Disease Control, Taiwan"
                     /subtype="ST64"
     gene            75..350
                     /locus_tag="NL708_RS23385"
                     /old_locus_tag="NL708_23385"
     CDS             75..350
                     /locus_tag="NL708_RS23385"
                     /old_locus_tag="NL708_23385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001419705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_052977602.1"
                     /translation="MAYDEHSIRVMSADEIEQRFDWLRLENLAKEHRLPVDWVRRGFEA
                     CWRLGIEPDYFIDRYIFKRDVPLVPEFEVVFREIVNENRYRDRMRF"
                     /name="hypothetical protein"
     gene            682..1590
                     /locus_tag="NL708_RS23390"
                     /old_locus_tag="NL708_23390"
     CDS             682..1590
                     /locus_tag="NL708_RS23390"
                     /old_locus_tag="NL708_23390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009440807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_199371282.1"
                     /translation="MSAVLQRFREKLPHKPYCTNDFAYGVRILPKNIAILARFIQQNQP
                     HALYWLPFDVDRTGASIDWSDRNCPAPNITVKNPRNGHAHLLYALALPVRTAPDASASA
                     LRYAAAIERALCEKLGADVNYSGLICKNPCHPEWQVMEWREEAYTLDELADYLDLSASE
                     RRSVDKHYGLGRNCHLFEITRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRKFSPEGFSAVQAARGRKGGLAKGEAYEDKRFMALCMLENGYSQ
                     KAIAAMLDVHRNTIRNWAMHK"
                     /name="replication initiation protein"
     gene            complement(1796..2071)
                     /locus_tag="NL708_RS23395"
                     /old_locus_tag="NL708_23395"
     CDS             complement(1796..2071)
                     /locus_tag="NL708_RS23395"
                     /old_locus_tag="NL708_23395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_052995416.1"
                     /translation="MSRTLEQKIAEAEARLQRLKAKSRSLDTAQKVIVGAAMLARVRRP
                     EEAQLRAFLLQFLRKEVTRQADVNRLQPLINELEKLPRPPAKPQNG"
                     /name="hypothetical protein"
     gene            2250..4469
                     /gene="mobQ"
                     /locus_tag="NL708_RS23400"
                     /old_locus_tag="NL708_23400"
     CDS             2250..4469
                     /gene="mobQ"
                     /locus_tag="NL708_RS23400"
                     /old_locus_tag="NL708_23400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_052995415.1"
                     /translation="MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRK
                     RGVDDAVILTPANAPSWCGDRSVLWNAVEKAEQRRNSQLAREIELAIPREISREAAREA
                     VLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTTRAVGETGFAGKVRDWNDRALAET
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAMEKRGMETERGEQ
                     NRLINSLNLEIQVSRTRLAVIQVQENVRKRELSDAARRAAEALNLTIPAANASADTLRE
                     FIATLPQECGNAWEMTPEFVAMNGKANDIKREGNALVKERDILEKEMTGLRKARPVASI
                     LSELPLMTWAEPEYRKRQLRFWKLEKQIESLLRTYRAVKERDIPARRQAFETQWNTWIS
                     PGMAELKEKLSAREAERRREEAEAEARRKEQEYDARLKHHDNHRLSRETALAGVITELG
                     RAREPGTGRITRYMMLSNRAGEFTVWGDELAHYPQSVHDPVNVYLSPGGAVMVSDIREG
                     MPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPHHWPDNFYFSDDRRPAA
                     SPLPSAHRVDVTAYAAPEQLMPVVFSTERNSRTLNLLLCKGPEEMLVGFVRLEDELRPV
                     LALPSPDYSHLMVSIITENGIHLAGYGEAINRDADTPYPPEPKLMQFRLKGCQDTLFAA
                     INKPEEMPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHYRGMSM"
                     /name="mobQ"
     Typing          complement(2076..2249)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.571"
                     /coverage="98.0"
                     /evalue="2.65e-76"
     Typing          complement(2250..2608)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          683..1410
                     /name="rep_cluster_2134"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.068"
                     /coverage="80.0"
                     /evalue="0.0"
     Typing          2251..4466
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.234"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttttgcgtca gaacgcgtct gagagcgttt taaggggtac gtacaacagg agttatggta
       61 aatcggaggt gtttatggct tacgacgaac attcgattcg cgtgatgtct gctgacgaga
      121 tcgagcaacg ttttgactgg ttgcgcctgg agaacctggc gaaggagcat cgcctacccg
      181 ttgactgggt ccgacgggga tttgaagcct gctggcgact gggtatcgag ccggattatt
      241 tcatcgacag gtatatcttc aaacgggatg tgccactggt gccggagttt gaggtcgtgt
      301 tcagggagat cgtgaacgaa aaccgataca gggatcggat gcgtttctga tatgcctcta
      361 aaaacgcctg taagcgattc tgacgcgttt ttctgatttg ggtgaggttt tttacgtcca
      421 tatccacttt tttgcgtcac agagcgattg agagcgtttt agagggtacg tacaacggga
      481 gttatggtaa atggatcggt ttttcgggaa ggatcgacag gatttgccgt tgggtgtagt
      541 gtaagcgact gaaaaacaaa cgccccgtaa atcgtgctct caccgccaag attgatcacg
      601 aaattacagg gcgccgggtt ccgcgtttcc cgatgggaaa gcgcggttag ttaaactgtg
      661 taccgagaga aatcgtatca catgagcgcc gtacttcaac gcttcaggga aaaattaccg
      721 cacaaaccgt actgtacgaa cgatttcgcg tacggcgttc gcattctgcc gaaaaacatt
      781 gccattcttg cccgtttcat ccagcagaac cagccacatg cactgtactg gcttcccttt
      841 gacgtggacc ggacgggggc atcaatcgac tggagcgacc ggaattgtcc ggccccgaac
      901 atcaccgtaa aaaatccccg taacgggcac gcgcatctgc tctacgcgct cgcccttcct
      961 gtgagaactg cgccggatgc atcggcttcg gcgctcagat acgctgccgc tattgagcgt
     1021 gcgttgtgtg aaaaactggg cgcggatgtg aattacagcg gcctgatctg caaaaatccg
     1081 tgccaccctg aatggcaggt gatggagtgg cgcgaggaag cctataccct cgatgaactg
     1141 gctgattatc tcgatttgag cgcctcagag cgtcgtagcg tcgataaaca ttacgggctg
     1201 gggcgaaact gccacctgtt cgaaataacg cgtaaatggg cttacagagc gattcgtcag
     1261 ggatggccag cattctcaca gtggcttgat gccgtgatcc agcgtgtcga aatgtacaac
     1321 gcatcgcttc ccgttcctct ttcactggct gaatgccggg ctattggcaa gagcattgcg
     1381 aaatacacgc acagaaaatt ctcaccggaa ggcttttccg ctgtacaggc cgctcgaggc
     1441 cggaaaggtg gccttgctaa aggcgaagcc tacgaggaca agcgtttcat ggcgctatgt
     1501 atgctggaga atggatattc tcagaaagct attgcggcga tgctggatgt acatcgaaat
     1561 acgatccgta attgggcaat gcacaaatag ccttatcaga taacagcgcc ttttcggcgc
     1621 ttttttgagc tgttggcgtt cctgcggttt ttccggttcc gcccagcaat ggcgctggtt
     1681 tcctcgtgat tgcggtggta gcgctcgccg cagcctcatg accgagcgta gcgagcgaat
     1741 gtgcgaggaa gcgcaaaggc gtccggtggt gcatgtggca cttacgcgcc ggggcttatc
     1801 cgttctgcgg tttcgcaggt ggtcttggta gcttctccag ctcgttaatc agtggttgta
     1861 gccggttcac atcggcctgt cttgtgactt cctttcgcag gaactggagc aggaacgcac
     1921 gcagttgcgc ctcttccggc ctccgtaccc tcgccagcat ggctgctccc acaatgactt
     1981 tttgcgcagt gtccaggctc cggctcttcg ccttcaggcg ctgcaatctg gcctcagctt
     2041 cagcaatctt ctgttcgagt gttctgctca tttcgtgact ccttgcgcgg tgaaaaatcg
     2101 cattttagct cgtcactggt agtttaaaaa ctgagctggc ataatgcacg gcacatcacg
     2161 aagtgcgcac ttatacaatc ttcacttcgt ttcgattgtg tgcgccctgc ggggctgaaa
     2221 gaaaacggca aaaaggcatt acggaagaaa tggcgattta tcatctcagc atgaaaatca
     2281 tttcgcgaaa aaacggctac agtgccgttg cttctgctgc ctaccgttcc ggctctgtca
     2341 tacccgatga ccgtaccgga ttaatccacg attacacccg taaacgcggc gttgatgatg
     2401 cggtcattct cacccctgcg aatgcaccgt cctggtgtgg tgaccgttcc gttctctgga
     2461 atgcggtcga gaaagccgaa cagcgccgga actcccagct ggcaagggag attgaactcg
     2521 ccattccccg tgagatttcc cgcgaggccg cacgggaggc cgttctcgct tttgtccggg
     2581 aaaactttgt cagtcggggc atgattgccg atgtggcgtt ccatcatatg gaccggacca
     2641 acccccatgc acacatcatg ctgaccacga gagctgtcgg ggaaacggga ttcgcaggaa
     2701 aggtcaggga ctggaacgac cgggcactcg ccgagacgtg gcgcgcatca tgggctgacc
     2761 atgcgaacag agcgcttgcg aacgccggct accaggaaga gatagaccat cgttcatacg
     2821 agcgtcaggg actggagaaa gcgccgggcc ttcacctcgg aaaggctgcc tgtgcgatgg
     2881 aaaaacgggg catggaaaca gaacgcggtg agcagaaccg cctgattaac agccttaacc
     2941 tggaaataca ggtttcccgc acaaggctgg cagtcatcca ggtacaggag aacgtgcgga
     3001 aacgggaact cagcgatgcc gcacgtcgtg cagcggaagc ccttaatctg accattcccg
     3061 ccgcgaatgc ctcagcggat accctgcggg aattcattgc cacactgccg caggaatgcg
     3121 ggaacgcatg ggagatgaca ccggagttcg tggcgatgaa cgggaaggca aacgacatca
     3181 aacgtgaggg gaatgcgctg gtgaaagagc gggatattct cgaaaaagag atgaccggac
     3241 tcagaaaagc ccgtccggta gcgtccatcc tgtcagagct tcccctgatg acatgggctg
     3301 aaccggaata ccgcaaaaga caactccgct tctggaaact cgagaaacag attgaatctc
     3361 ttctccgcac ctacagggcc gtgaaagaac gggacattcc cgcccgtcgt caggcctttg
     3421 aaacgcagtg gaatacgtgg atttcgccgg gaatggcaga gctgaaagaa aaactgtcag
     3481 cacgggaagc ggagcggcgc agggaggaag ccgaagcgga agcgcgccgg aaggaacagg
     3541 aatatgacgc acggctgaaa caccatgata accatcgcct gagccgtgaa acggcattag
     3601 ccggggttat tacggagctg gggcgtgcca gagagccggg aacgggcagg ataacccgct
     3661 acatgatgct gagtaacaga gccggagaat tcacggtatg gggtgatgag ctggcgcatt
     3721 acccccagag tgttcatgac ccggtgaatg tttacctgtc gccaggcggg gctgtgatgg
     3781 tctcggatat acgtgaggga atgccagaat ctcatgagac gatggcgcgg cctgagcgtg
     3841 tgagaatgta ttccggtgcg acggtccggc atgtactgga acagatgcgc caggggtggc
     3901 cctcttacgg ttttccggcg ctgccgcatc actggccgga taatttttat ttcagcgacg
     3961 accgcaggcc cgcagcctct ccgctgccgt cagcgcaccg ggtggacgtc accgcttatg
     4021 cggcaccgga gcaactcatg cccgttgtct tttcgacaga gcgaaacagc aggacgctga
     4081 atctgctgtt gtgcaaaggg ccggaggaaa tgcttgtcgg ttttgtgcgc ctggaggacg
     4141 agctgcgtcc cgttcttgcg cttccgtcgc cggattacag tcatctgatg gtaagcatca
     4201 tcacagagaa cgggatacac ctggcaggct acggtgaggc cataaaccgt gatgctgata
     4261 ctccgtaccc accggaaccg aagctgatgc agttcaggct taagggctgt caggacacgc
     4321 tttttgctgc catcaacaaa ccggaagaga tgccggatta tctcttccgt caactcggat
     4381 ttaatcagac ctggcatgaa tggaagcggg acgaacagca caggcaacaa caacgacgcc
     4441 ccggacatta ccggggcatg agtatgtgat atccggggct gcaccccgaa ccccgccaac
     4501 gtctcacggg acacgaaaaa attccgcgtc ccgtgaggcg ttttctggat gagaaagttt
     4561 gccgttttga cccgttcgcg cttctgaacg gtcgaaaccg atcgcgcatc gctttcgtga
     4621 atagttatgc agacccctga aaacgattct gacgcgtttt tctggtttgg cctggtgttt
     4681 tcttgtcttt ttgtgtt
//
