LOCUS       NZ_CP100677             1304 bp    DNA     circular CON 23-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Mbandaka strain R17.0904
            plasmid pR17.0904_1.3k, complete sequence.
ACCESSION   NZ_CP100677
VERSION     NZ_CP100677.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29431219
            Assembly: GCF_024266165.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Mbandaka
  ORGANISM  Salmonella enterica subsp. enterica serovar Mbandaka
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1304)
  AUTHORS   Chiou,cs., Chen,bh., Wang,yw. and Teng,R.H.
  TITLE     28 Salmonella enterica strains that have azithromycin resistance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1304)
  AUTHORS   Chiou,cs., Chen,bh., Wang,yw. and Teng,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2022) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 196x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/23/2023 02:20:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,803
            CDSs (total)                      :: 4,684
            Genes (coding)                    :: 4,565
            CDSs (with protein)               :: 4,565
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 43 of 119
            Pseudo Genes (incomplete)         :: 84 of 119
            Pseudo Genes (internal stop)      :: 24 of 119
            Pseudo Genes (multiple problems)  :: 30 of 119
            Pseudo Genes (short protein)      :: 1 of 119
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP100677.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Salmonella enterica subsp. enterica serovar
                     Mbandaka"
                     /mol_type="genomic DNA"
                     /strain="R17.0904"
                     /serovar="Mbandaka"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:192954"
                     /plasmid="pR17.0904_1.3k"
                     /geo_loc_name="Taiwan: Chiayi County"
                     /collection_date="2017"
                     /collected_by="Centers of Disease Control, Taiwan"
                     /subtype="ST413"
     gene            1..531
                     /locus_tag="NL713_RS24005"
                     /old_locus_tag="NL713_24005"
     CDS             1..531
                     /locus_tag="NL713_RS24005"
                     /old_locus_tag="NL713_24005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001473090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_137445334.1"
                     /translation="MISVLDKRSQRRMREIDLERAKEAQERREDQKNSKFTQVSPKGWE
                     RIRELSKDKQGVAAIALYSFLAEHIDPTCGAVVAEQQFLADKLNVSRSTIKRWLNYLET
                     KNAVVRIPVAGNVCAYALDPHEVWKGYNSSKGYAAFVSKTLVNVDGDVQRRIVAMFKGQ
                     EGDAKDQCDLPLE"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 atgatttcgg tgttagacaa acgatctcaa agacggatga gagagatcga tttagagcgc
       61 gctaaagagg cccaggaacg gcgtgaagac caaaagaaca gtaagttcac ccaagtatcc
      121 ccaaagggct gggaacgcat tagagagctt tctaaggaca aacagggtgt ggctgcaatc
      181 gcgctgtact cgtttttagc tgagcacatc gatccaacgt gtggggctgt cgttgctgaa
      241 caacagtttt tggctgacaa actgaacgtt agcaggagca cgatcaagcg ttggttaaac
      301 taccttgaga ccaaaaatgc ggtagtaaga atcccagttg ccggcaacgt ctgcgcctat
      361 gcgctagacc cccatgaggt ttggaagggt tacaactcca gcaaaggcta tgcagcattc
      421 gtaagcaaaa cgttggttaa cgttgacggt gatgtacagc gccgaatcgt tgccatgttc
      481 aaagggcagg aaggcgacgc taaagaccaa tgcgacctgc ctttagagtg aaagccggtc
      541 aagggcgcgt agcggcgtag cgcacccttg acgggctgta acgaccccca cacttggcaa
      601 aggtggttgt gatcacgcag tgagcgcaac cacctgttaa gccgcccttg acgttgacct
      661 tccgggtaaa aaacactgcg atgcaggata gggcaaacgc cgcaaaatga cgtcatccga
      721 catcattccg ccgcgttcgc ccagtgacct acagtcggct ctggggtgtc ggggctgtgc
      781 cctgaccagg cgttttggag tatcgccacc gtggtggcgg tgctacaaaa catatcctgt
      841 cccttccttg gcatctctga agtttagcca gtatacactc cgctagcgct acgtgactgg
      901 ttcagggctg cgccccgaaa cccgcaaagg tcaaaaccaa aagcgtctga caggtggttg
      961 cgctcactgc gtgatcacaa ccacctcctg gcagcatgct gggcaatttt gagcgtcaag
     1021 gtcgggccgc ttcgcggtcg ctaaagcgaa ccttgacccc caaaaatgcc cgccgaaagg
     1081 cgggaggtaa ctttagccct gggtgttgaa tttaggtttt taaagattag ataagcggaa
     1141 aactataagt atctgattta tatacatttc aataaatgag ctagaccaca catgcgtgag
     1201 ctagctctag accatgcatg cgtgagctag cttgagctaa gatagtttac ttttgagcta
     1261 aggtagctta tttttgagct accaatggct catgaggaat agcg
//
