LOCUS       NZ_CP098782             4995 bp    DNA     circular CON 03-APR-2024
DEFINITION  Enterobacter hormaechei strain YQ13422hy plasmid pYQ13422-3,
            complete sequence.
ACCESSION   NZ_CP098782
VERSION     NZ_CP098782.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28918927
            Assembly: GCF_023805415.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 4995)
  AUTHORS   qiao,j.
  TITLE     Genetic Characterization of Clinical Enterobacter hormaechei
            Strains, which harboring blaIMP-4, Belonging to rare Clone ST51
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4995)
  AUTHORS   qiao,j.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2022) clinical lab, The First Affiliated Hospital
            of Zheng Zhou University, Daxue Road, zhengzhou, henan 45000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: fyle v. v2.5; CANU v. v1.7.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023805415.1-RS_2024_04_03
            Annotation Date                   :: 04/03/2024 06:44:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,839
            CDSs (total)                      :: 4,723
            Genes (coding)                    :: 4,647
            CDSs (with protein)               :: 4,647
            Genes (RNA)                       :: 116
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 25 of 76
            Pseudo Genes (incomplete)         :: 55 of 76
            Pseudo Genes (internal stop)      :: 15 of 76
            Pseudo Genes (multiple problems)  :: 14 of 76
            Pseudo Genes (short protein)      :: 1 of 76
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP098782.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4995
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="YQ13422hy"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="pYQ13422-3"
                     /geo_loc_name="China"
                     /collection_date="2017-03"
     gene            300..632
                     /locus_tag="ND013_RS24125"
     CDS             300..632
                     /locus_tag="ND013_RS24125"
                     /inference="COORDINATES: protein motif:HMM:NF017757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_045332894.1"
                     /translation="MSNDENEYTFKPVNAQAIKALKSLPEWVQAAFVHALDSVFYGVDP
                     GMSIAHLTVIGPGVVELRINGRPAYRCVYRSKAPGQVDLLHAFVKTCQGPDKKNMATTA
                     SRYKLL"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(648..956)
                     /locus_tag="ND013_RS24130"
     CDS             complement(648..956)
                     /locus_tag="ND013_RS24130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003341209.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="WP_012477691.1"
                     /translation="MKNSFELISTDPVKFNTWSIKSKLIIIIRKLMIDNKWSQSEAAEK
                     LGISQPRVSNMLNGKLDKFSVDTLLEMVFKMGYKLDMDFTPLNTESPLTMVVKKAMV"
                     /name="helix-turn-helix transcriptional regulator"
     gene            complement(1306..1437)
                     /locus_tag="ND013_RS24220"
     CDS             complement(1306..1437)
                     /locus_tag="ND013_RS24220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058645281.1"
                     /translation="MHEPPVQSDCCACSGNYRLESNPEKHDLTPLAAATGKGCTRDN"
                     /name="hypothetical protein"
     gene            2086..2409
                     /locus_tag="ND013_RS24135"
     CDS             2086..2409
                     /locus_tag="ND013_RS24135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_012477689.1"
                     /translation="MLTMWVTEDEHRRLLERCDGRQLAAWMRQICLDEKPARSGKLPSI
                     SPALLRQLAGMGNNLNQIARRVNAGGGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2399..>3052
                     /locus_tag="ND013_RS24140"
                     /pseudo=""
     CDS             2399..>3052
                     /locus_tag="ND013_RS24140"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            3087..3578
                     /locus_tag="ND013_RS24145"
     CDS             3087..3578
                     /locus_tag="ND013_RS24145"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000096688.1"
                     /translation="MSSLLTLAKDLEQQSKAQQQSTGEMLKAAFSEHEQSVRAELSASA
                     RRISDAILAHEQSMSEAMEKNRRSVLRTAGRTWLTILMVSALLIGTSGSILWWQGQQIT
                     DNYTHLRQQEDTLAKMTARTWGVRYQESSDGRRFLILPPGMQTEAIPYDGTTWIRLKQE
                     "
                     /name="MbeB family mobilization protein"
     gene            3585..3800
                     /locus_tag="ND013_RS24150"
     CDS             3585..3800
                     /locus_tag="ND013_RS24150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_029590204.1"
                     /translation="MTELEKQLLSALEQLQQDYSQRLDEWESAFAEWRSMCGLMQRENA
                     MLNERVSDLSTQVLSLSEQLRRLSGN"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(4287..4514)
                     /locus_tag="ND013_RS24155"
     CDS             complement(4287..4514)
                     /locus_tag="ND013_RS24155"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_053504437.1"
                     /translation="MGYHYKELTVIELTAEEFELHKEGYSLELLTNMRNEEHTKYWEVC
                     PSCEGKMDPEENQGHEGYCATCWLDNPDWW"
                     /name="hypothetical protein"
     gene            complement(4650..4853)
                     /locus_tag="ND013_RS24160"
     CDS             complement(4650..4853)
                     /locus_tag="ND013_RS24160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017191052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071686691.1"
                     /translation="MAIYVGPHSKVGRNGGSFQECDINTTNHTVTRKYGRYCTIRDNEY
                     APPTSVPGRHWLQIFRTPDNTE"
                     /name="hypothetical protein"
     Typing          1800..1973
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.571"
                     /coverage="100.0"
                     /evalue="2.6e-76"
     Typing          complement(1307..1833)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2400..3892
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 acacatgtaa ctgttaggtc ttctgcgcct aagtcaaatt gatttttttt tattcaaaca
       61 gacgtttgaa gcactaataa gaattgatga catataagaa tttatatact atggcatcgt
      121 tggcgagatt gccaatgaat tgttggttca acgagcaata accatgcgcg cactttccta
      181 aatatagggc ggtgtggttt ttttatgctc ataaatcaat caatcaatcg gagtttatat
      241 gcgaaacgtt ttaacaatag ttaagttgct aaaaatcaat aacctagatg aggatgttta
      301 tgtcaaacga cgaaaatgaa tacacgttca aacctgttaa tgcccaggct atcaaggcat
      361 taaaatcact cccagaatgg gttcaggctg cattcgtgca cgcattggat tcggtgttct
      421 acggggtgga tccggggatg tccatcgcac acttgacggt catcggcccc ggcgttgttg
      481 agttgagaat caatggtcgc ccagcttatc gctgtgtata ccgcagtaag gcacccggcc
      541 aggtggactt actgcatgcg tttgtgaaaa cgtgccaagg accagataag aaaaacatgg
      601 caaccacagc ttcgcgctac aagttgctct aatcaaattg gcgatggtta caccatcgcc
      661 ttttttacaa ccatagtcag gggcgactct gtgtttaatg gagtgaagtc catatccagc
      721 ttgtacccca tcttgaaaac catttccaac agcgtatcga cggagaattt gtccagtttt
      781 ccgttcagca tattgcttac tcttggttga ctgataccta acttttctgc cgcttctgat
      841 tgcgaccatt tgttatcaat cattagtttt ctaattatga taatgagttt tgacttgatc
      901 gaccatgtat tgaactttac tgggtctgta ctgatcagct caaatgaatt tttcatagaa
      961 cagctccact tcggattacc tgtatcgcaa tgataaaagt tccggcaagg aactccttat
     1021 atatatatac gggcggggca ttatacaagt aatgatattg ctttcaagag gaaaaagtgt
     1081 aaagacattt tgatctttta agtaaagctt attgtgttga cgtatcaatc cagcaaagag
     1141 tagtctttgc ccataaacga aaaaaccacc cggcaaggtg gtttttcgaa ggttcattaa
     1201 accggcaagt ttatgaaccg tggtaacagg gtgtacaaga ccgctgccac ctaattcgtc
     1261 cttccagttt agccgtagtt ggactgatac ttcaagaact ctgcatcagt tatctcttgt
     1321 acacccttta ccagtggctg ccgccagtgg cgttaagtcg tgcttttccg ggttggactc
     1381 aagtcgatag ttaccggaac aggcgcagca gtcggactga acggggggtt cgtgcataca
     1441 gtccagcttg gagcgaactg ccttcccgga accgagtgtc aggcgtggaa tgagataaac
     1501 gcggccataa cagcggagtg acaccggtaa accgaaaggc aggaacagga gagcgcacga
     1561 gggagccgcc agggggaaac gcctggtatc tttatagtcc tgtcgggttt cgccaccact
     1621 gatttgagcg tcagattttg tgatgcttgt caggggggcg gagcctatgg aaaaacggct
     1681 tcgccgcggc cttattgctt ccctgctaag tttcttcctg gcatcttcca ggacatttcc
     1741 gccccgccag taagccattt ccgctcgccg cagccgaacg accgagcgca gcgagtcagt
     1801 gagcgaggaa gcggaatata tcctgtatcg catattctgc tgacgcgccg gtgccgtatt
     1861 ttttctcctt ccacatgaag cacttcactg acatccgcat tcgtgccaac atagtaagcc
     1921 agtatacact ccgctagcgc tacgtgactg gttcagggct gcgccccgaa acccgccaaa
     1981 agcctgacgc gcctgcggct tgtccaaccc cgcgccgatc gggaaaggct ttcccgcccg
     2041 tcccggcgtt atcaggaggc tggtttgtca gagaaacgga gcaagatgct caccatgtgg
     2101 gtgacggagg acgagcaccg gcggctgctc gagcgctgtg acggcaggca gctggcggcg
     2161 tggatgcggc agatctgcct ggacgaaaag ccggcacgtt ccggaaagct cccctcgatc
     2221 tcgccggcgc tgctgcgcca gcttgccggc atgggcaata acctgaacca gatagcccgc
     2281 cgtgttaacg ccggcggcgg caccggccat gacagggtac agattgtggc ggcgctgatg
     2341 gccatcgatg ccggccttga gcggctgcgg cacgccgttc ttgagaaagg aacggacgat
     2401 gatcgttaaa tttcatccgc gcggccgcgg cggtggcgcc gggccggtgg actatctgct
     2461 gggtaaagat cggcagcgtg aaggcgccac cgtcctgcag gggaagccgg aagaagtccg
     2521 ggagctgatt gacgcgtcgc cttacgttaa gaaatacacc tccggcgttc tgtcgtttgc
     2581 ggaggccgat ctgcctcccg gccagcggga aaaactgata gccagcttcg agcgggttct
     2641 gatgcccgga ctcgataaag atcagtacag cattctgtgg gtggagcacg cggacaaggg
     2701 gcgtctggag ctgaactttc tgatccccaa taccgagctg ctgaccggca ggcggctcca
     2761 gccttactac gaccgcgccg accggccgcg catcgatgcc tggcagacta tcgtgaacgg
     2821 cagactgggg ctgcacgacc cgaacgcgcc ggaaaaccgc cgggcgctgg tcacgccgtc
     2881 cgggctgccg aaaacgaagc aggaggccgc agaagccatt acccggggac tgctgaccct
     2941 tgcttcgtcc ggggagctga aaagccgtca ggatgtcact gacactcttg aaggtgcagg
     3001 ttttgaggtg gtgcgcacca cgaaaagcag tatcagcatt gccgacccgg acggggggcg
     3061 aaacatccga ctgaagggag ccatctatga gcagtctttt aacgctggcg aaggacttag
     3121 agcagcaatc gaaagcgcag cagcagagta ccggcgagat gctgaaagcc gcattcagcg
     3181 agcacgagca gtctgtcaga gcggaactga gcgcaagcgc gaggagaatc agcgacgcca
     3241 tcctcgccca cgagcagagt atgagcgagg cgatggagaa aaaccggcgg agcgtactgc
     3301 ggactgccgg gcggacatgg ctcaccatcc tgatggtgtc agcgctgctg atcggcacga
     3361 gcgggagcat tctgtggtgg caggggcagc agataaccga caattacacg catcttcgtc
     3421 agcaggaaga taccctggcg aaaatgaccg cccggacgtg gggagtgcgc tatcaggaga
     3481 gcagcgacgg ccggaggttt cttatcctgc cgccggggat gcaaaccgaa gccatcccct
     3541 acgacgggac gacatggatc cgcctgaaac aggagtagcg gaaaatgaca gagctggaaa
     3601 agcagttgct gagcgcatta gagcagctac agcaggacta ctcgcaaagg ctggacgaat
     3661 gggagagcgc cttcgcggaa tggcggagca tgtgtgggct tatgcaacgg gagaacgcga
     3721 tgctgaacga gcgcgtgtcg gacttgagca cgcaggtgct gagtttaagc gagcagctgc
     3781 gccgcttgtc cgggaactga atgccatcga gctccggcag agggagaatg agtatcagaa
     3841 aacactggag ctggagcgcc agccgcagaa aacctaccgc gggccgacac tttaaaccat
     3901 ccaggcagct gacaacccgc acgaagaggg gctcttattt ctcccgctaa ataggttcgt
     3961 gatcaaaaag gtcacgactt attcaggagc gggaaatgaa gctgttaaat cttattgaat
     4021 cattgcttaa ctgcctgtat ctggcggcgg agctgtggga ctggctggag aagcatttgt
     4081 cggtttttaa ggcattggcg cggattttag tgtgacttta acatccatgc atctggctgc
     4141 atgactatgc accagtgtaa tattcagcgg ctgcgtttct ggtgtttttt cgttatgtct
     4201 gtcgccactt tctcgcgtct ggcaccggaa acgcagccaa ccccgtttca gcggtgcggg
     4261 caacggatgt tatggtaaat tattaactac caccagtcag ggttatcgag ccagcatgtg
     4321 gcacagtaac cttcatgccc ttgattttct tctggatcca tttttccttc gcaggaaggg
     4381 caaacttccc aatacttggt gtgttcttca tttctcatgt tagttaaaag ctctaaagag
     4441 tatccctctt tatgaagctc aaactcttcc gcagttaatt cgatgacggt taattccttg
     4501 taatggtaac ccattcgctt gcctcgcttt atgcagctca atactaagat actgaaaagc
     4561 attaaatgtc aggtttttca gtatcttaca atgataatcc tatccggttt atacaaggga
     4621 tattaccgct ttactaagca gaagatgaat tactctgtgt tatctggcgt gcggaaaatt
     4681 tgcagccaat ggcggcctgg aacgctggtt ggaggggcgt actcattatc gcggattgtg
     4741 cagtagcggc catattttcg ggttaccgta tgattcgttg tgttgatatc acattcctgg
     4801 aatgaaccac cattacgacc tactttgctg tgaggaccaa cataaatagc cattctaagc
     4861 tccttcgtca gatagttgat taccagtatc taagtagatt ttattaattt ctatatttat
     4921 caatatcata gtgtgctttg ttggctttcc acattgcgtc gataaaatcc tcatatcttg
     4981 atgtaaggaa aacca
//
