LOCUS       NZ_CP098174             4167 bp    DNA     circular CON 12-JUN-2023
DEFINITION  Klebsiella pneumoniae strain Z0117KP0003 plasmid pZ0117KP0003-5,
            complete sequence.
ACCESSION   NZ_CP098174
VERSION     NZ_CP098174.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28703760
            Assembly: GCF_023657875.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4167)
  AUTHORS   Yoon,E.-J., Choi,Y.J., Won,D., Choi,J.R. and Jeong,S.H.
  TITLE     Klebsiella pneumoniae, a One Health interface shuttle organism for
            the genes of CTX-M ESBL
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4167)
  AUTHORS   Yoon,E.-J., Choi,Y.J., Won,D., Choi,J.R. and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2022) Research Institute of Bacterial Resistance,
            Yonsei University College of medicine, Gangnam Severance Hospital,
            Yonsei, Seoul, Select One 06273, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: other: SMRTLink v. v10.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 137x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/12/2023 04:13:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,799
            CDSs (total)                      :: 5,677
            Genes (coding)                    :: 5,528
            CDSs (with protein)               :: 5,528
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 59 of 149
            Pseudo Genes (incomplete)         :: 93 of 149
            Pseudo Genes (internal stop)      :: 26 of 149
            Pseudo Genes (multiple problems)  :: 26 of 149
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP098174.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="Z0117KP0003"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:573"
                     /plasmid="pZ0117KP0003-5"
                     /geo_loc_name="South Korea"
                     /collection_date="2017-07"
     gene            complement(267..509)
                     /locus_tag="NBY30_RS28930"
                     /old_locus_tag="NBY30_28925"
     CDS             complement(267..509)
                     /locus_tag="NBY30_RS28930"
                     /old_locus_tag="NBY30_28925"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_098963735.1"
                     /translation="MHSAEIHTIQPGEVLFPAFFSSENGERGRNLLRGREALPAQPENR
                     FSAPSGIGFVDGRQSRYGKSPDDSPHDSPAIRIVN"
                     /name="hypothetical protein"
     gene            complement(875..1507)
                     /locus_tag="NBY30_RS28935"
                     /old_locus_tag="NBY30_28930"
     CDS             complement(875..1507)
                     /locus_tag="NBY30_RS28935"
                     /old_locus_tag="NBY30_28930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_012579086.1"
                     /translation="MKDINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIDSFDEKESIFIILDADTSFSDTERSIIATLRELQISSPSSHNEIAMNGN
                     TKISFFIMPGKDKQGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDDISASDKEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKDFISKI"
                     /name="DUF3226 domain-containing protein"
     gene            complement(1507..2622)
                     /locus_tag="NBY30_RS28940"
                     /old_locus_tag="NBY30_28935"
     CDS             complement(1507..2622)
                     /locus_tag="NBY30_RS28940"
                     /old_locus_tag="NBY30_28935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_012579087.1"
                     /translation="MIKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKNRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGINYKFKTATIITTSRKINKEATITNVSSLLTQKRKKDILEN
                     LKKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            complement(2967..3080)
                     /locus_tag="NBY30_RS28945"
                     /old_locus_tag="NBY30_28940"
                     /pseudo=""
     CDS             complement(2967..3080)
                     /locus_tag="NBY30_RS28945"
                     /old_locus_tag="NBY30_28940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            3496..3687
                     /locus_tag="NBY30_RS28950"
                     /old_locus_tag="NBY30_28945"
     CDS             3496..3687
                     /locus_tag="NBY30_RS28950"
                     /old_locus_tag="NBY30_28945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3687..4088
                     /locus_tag="NBY30_RS28955"
                     /old_locus_tag="NBY30_28950"
     CDS             3687..4088
                     /locus_tag="NBY30_RS28955"
                     /old_locus_tag="NBY30_28950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(2968..3375)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.399"
                     /coverage="99.0"
                     /evalue="5.92e-171"
ORIGIN
        1 gctcctcacc actaaaaata cccacacccc acgcaaaatt aaaattttgc agattcctta
       61 tttacaacaa tgggttaatg aaaaataaat gtgcggtgat gtgttacaaa gtgcagatcc
      121 aagtcgtgga cgactctatg gcgaatcgct gacgaattgc ccacgattca tatgtgaatc
      181 acgctttatt atcatattgt tatgatgaat cgactcttga ttcaattcat cactttgggt
      241 gttttttgct catggtgact cttgattcaa ttcacgattc gaatcgccgg tgaatcgtgt
      301 ggtgagtcgt ccggcgactt gccataacgt gattgccggc cgtcgacgaa cccgattcct
      361 gaaggtgctg aaaaccggtt ttccggctgc gccggcaacg cttcacggcc acgcaataaa
      421 ttgcgtcccc gttcaccgtt ttcggaggag aagaacgccg gaaacaggac ttcccctggc
      481 tgaatggtgt gaatttccgc gctatgcact tgcgcgcata ctcatgcatg ccgtaaaaac
      541 agagcctgcg cgtttctggc gggttttcgg gtggtttgtt gcctgtttta ccggtttccc
      601 gtcagaaacg tcctgagtcc gttttagcgg tgcgtacaat tatgatttta tgttaaattg
      661 ttttaagtga atagagagaa tataacttaa gggagcatct tgtgctgggt cttttacatt
      721 agatctgcac aatcattgtt ttggcatctg gtgatgtctt taggacgttt gagattgctg
      781 ataactaaag tgtatgatgc tttctatacg ttatccggcg tttaataaca ccctggtgat
      841 aagccagccc gtgaagggct ggcttgattt ggatttatat ttttgaaata aaatctttta
      901 tttcatcaaa gcaattgtct gctgtgttta ttattccatt tttcatggat attcctattc
      961 ttgagtcgga ttctctattg cagctaagat agacttgtac cttagctttt ttttcgtttg
     1021 ttggataagt gtactctttg tcactcgctg agatgtcatc tttattattt ttaatttttt
     1081 cgaaaaattc tattatgtat tcatataacg ctcgagtgct tgcgtgttca attatcagat
     1141 cttcaatggc accttgcttg tcttttcctg gcattataaa gaaagaaatt tttgtattgc
     1201 cattcatagc tatctcgtta tgcgagctgg gggaggagat ttgtagttct cgcaatgtgg
     1261 caattattga tctttctgtg tcagaaaatg atgtgtcagc atctaatata ataaaaatac
     1321 tttctttttc atcgaaagaa tcaatgtttt tgaatgctct aagtgcttgt tttaattttg
     1381 attttccatt tattttttcg acaaaaacat cggtaatgcc ttgtatttca agtaggttgc
     1441 atagaaaatg aaaatcatca tcaccctcaa cgaaaatgat ctttttgcta ttatttatgt
     1501 ctttcattat cttacctccc agtcgttctc aactgagtag gagaaatcat ccatattgaa
     1561 ttgtacggct gttggtttta gggagttctt ttctcttcct agtctaatat aagcgatatc
     1621 ttcatttttg ctatctattt cgtttattgc tcgtatcaca tcttgactat gagttgttgc
     1681 aaatatttga ttgttgtttt gttttgcaga tgaaattaat gattttatta tgtctttaat
     1741 tactgagtaa tgtattccgt tctcgatttc atcaataaga ataattgagt tttcctgtac
     1801 cagcactgag ctgataaaag ataatgctcg actgataccc tcgccaagca ttgatatttc
     1861 atttagctca ctaaatccaa tgtctaaata tatttcctta ttgttaccta tcgcagatat
     1921 tgctatatct acaattctgt catctatttt ttttaagttt tctagtatgt cttttttcct
     1981 tttttgtgtt agtaggctag atacatttgt aattgttgcc tctttgttta tctttctgga
     2041 tgttgttatt attgttgctg tcttaaattt ataattaatc ccatcccttt cgttttttat
     2101 ttcggatttt atttctacgc catcttcttt caattgcata gagaaaagct tattggaaac
     2161 cctgtttttc gcattgggtg tctcggtcac atttattttt aaagagttta ctgtggcctg
     2221 agaaccgata gtttgacgag gtatgttttg gttagatagt acggtgtcaa cgtttagaga
     2281 caaacttgat tctaatctct gatttgtttc tgtttcatat gtttgtgtta cttcagagcg
     2341 ttcatctcga atgactatgg acatcttttg tgatgtgtcc atatcatgaa agtaactaac
     2401 ccaaaatggc ttgtttttgt ttatttctgc catttctttt ctgaatgctt gaatgtttaa
     2461 caaaacagcc gggtttttta catcataaaa acaaaaaata gcatccagta tagatgtttt
     2521 cccgtagttg tttttcccag ctatgatatt taaagtcttt aattgcttta gatatagctc
     2581 attgaagcat ttgaagttct ttaaacttat ttcctttatc atgatagcct ctgttcgtgt
     2641 ttttgttata tgccatacga tttgttagta ccttaataaa atgtacagct ttcattgtga
     2701 ttagctagac tttatgtcaa agattaactt tgattgcttg tgttttaatc gatttttttt
     2761 actttcttct tgagattatc tggcagcagc cgtaagcttc cggctgtgaa cgaaaaaaac
     2821 cgccttggcg ggcggttttt tcgaaaggtt cagtagagtt ggcgctctat gaaccgaggt
     2881 aactggctta aagggagcgc agtcaccaaa actgttcgtt tagtttagct ttaactggcg
     2941 tataacttca agactaactc cctaaatcag ttaccagtgg ctgctgccag tggcgctttg
     3001 tcgtgtcttt ccgggttgga ctcaagacga tagttaccgg attaggcgca gcagtcggac
     3061 tgaacggggg gttcgtgcat acagtccagc ttggagcgaa ctgcctaccc ggaactgagt
     3121 gtcaggcgtg gaatgagaca aacgcggcca taacagcgga atgacaccgg taaaccgaaa
     3181 ggcaggaaca ggagagcgca cgagggagcc atcaggggga aacgcctggt atctttatag
     3241 tcctgtcggg tttcgccacc actgatttga gcgtcagatt ccgtgatgct cgtcaggggg
     3301 gcggagccta tggaaaaacg gccgctgtgc ggcctttcct tctttcctcc atgcgattac
     3361 tcggttttct cgagcgtttc tacgcatgct cctgccgctc gccgcagccg aacggcagga
     3421 gcgtagcgac tgagtgagcg aggaagcgga aaagaggaga tccctacact gaccactgac
     3481 gctctgaggc ctcttatgac gaaacaacag aaaacagcgc tgaacatggc taaattcatc
     3541 cagaatcagt ctctgctcct gctggagaag cttaacgagc ttgatctcga tgtcgaggcc
     3601 gacctttgtg agaaactcca cgatgatgcg gagcatcttt tccgtacact gtcctcgaga
     3661 ctggatgcat tacaggatgg taactgatgg ccagagtgtc tattagtgag gctgcccgac
     3721 tgacgggtaa gagtagaaca acactgcaca ggttaattaa agcaggtgac ctgtccacct
     3781 gtagcggtga gcgcaatgca aaaatggtag atacttcaga gcttttacgt gtctttggcc
     3841 cctttgagca accgaagggt gaacaccatt ctggacaggt ctctggacag cgtgatacag
     3901 cctctgctga ccagagtgaa caggtgatcc gtcatctgaa acaggagatt gaacacctga
     3961 acaccttact tttgtccaag gattcgcaca ttgacagcct gaaacaggcc atgctccttc
     4021 ttgaaaatca ccaggcaaaa ttaactgaat ccccggcgcc atggtggaaa ttctggaaaa
     4081 aatcctgacc ccgtcatgct tcagttttcc tctccggcca tcccagggag ttcctgaacc
     4141 ttcccaaaaa tcgtcagatc tctgaac
//
