LOCUS       NZ_CP098144             4167 bp    DNA     circular CON 12-JUN-2023
DEFINITION  Klebsiella pneumoniae strain Z0117KP0025 plasmid pZ0117KP0025-4,
            complete sequence.
ACCESSION   NZ_CP098144
VERSION     NZ_CP098144.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28703770
            Assembly: GCF_023657695.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4167)
  AUTHORS   Yoon,E.-J., Choi,Y.J., Won,D., Choi,J.R. and Jeong,S.H.
  TITLE     Klebsiella pneumoniae, a One Health interface shuttle organism for
            the genes of CTX-M ESBL
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4167)
  AUTHORS   Yoon,E.-J., Choi,Y.J., Won,D., Choi,J.R. and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2022) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, Gangnam Severance Hospital,
            Yonsei, Seoul, Select One 06273, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: other: SMRTLink v. v10.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 149x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/12/2023 03:37:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,751
            CDSs (total)                      :: 5,629
            Genes (coding)                    :: 5,500
            CDSs (with protein)               :: 5,500
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 47 of 129
            Pseudo Genes (incomplete)         :: 83 of 129
            Pseudo Genes (internal stop)      :: 19 of 129
            Pseudo Genes (multiple problems)  :: 18 of 129
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP098144.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="Z0117KP0025"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:573"
                     /plasmid="pZ0117KP0025-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2017-09"
     gene            complement(341..583)
                     /locus_tag="NBY50_RS28695"
                     /old_locus_tag="NBY50_28680"
     CDS             complement(341..583)
                     /locus_tag="NBY50_RS28695"
                     /old_locus_tag="NBY50_28680"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_098963735.1"
                     /translation="MHSAEIHTIQPGEVLFPAFFSSENGERGRNLLRGREALPAQPENR
                     FSAPSGIGFVDGRQSRYGKSPDDSPHDSPAIRIVN"
                     /name="hypothetical protein"
     gene            complement(949..1581)
                     /locus_tag="NBY50_RS28700"
                     /old_locus_tag="NBY50_28685"
     CDS             complement(949..1581)
                     /locus_tag="NBY50_RS28700"
                     /old_locus_tag="NBY50_28685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_012579086.1"
                     /translation="MKDINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIDSFDEKESIFIILDADTSFSDTERSIIATLRELQISSPSSHNEIAMNGN
                     TKISFFIMPGKDKQGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDDISASDKEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKDFISKI"
                     /name="DUF3226 domain-containing protein"
     gene            complement(1581..2696)
                     /locus_tag="NBY50_RS28705"
                     /old_locus_tag="NBY50_28690"
     CDS             complement(1581..2696)
                     /locus_tag="NBY50_RS28705"
                     /old_locus_tag="NBY50_28690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_012579087.1"
                     /translation="MIKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKNRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGINYKFKTATIITTSRKINKEATITNVSSLLTQKRKKDILEN
                     LKKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            complement(3041..3154)
                     /locus_tag="NBY50_RS28710"
                     /old_locus_tag="NBY50_28695"
                     /pseudo=""
     CDS             complement(3041..3154)
                     /locus_tag="NBY50_RS28710"
                     /old_locus_tag="NBY50_28695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            3570..3761
                     /locus_tag="NBY50_RS28715"
                     /old_locus_tag="NBY50_28700"
     CDS             3570..3761
                     /locus_tag="NBY50_RS28715"
                     /old_locus_tag="NBY50_28700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3761..4162
                     /locus_tag="NBY50_RS28720"
                     /old_locus_tag="NBY50_28705"
     CDS             3761..4162
                     /locus_tag="NBY50_RS28720"
                     /old_locus_tag="NBY50_28705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     Typing          complement(3042..3449)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.399"
                     /coverage="99.0"
                     /evalue="5.92e-171"
ORIGIN
        1 tcatgcttca gttttcctct ccggccatcc cagggagttc ctgaaccttc ccaaaaatcg
       61 tcagatctct gaacgctcct caccactaaa aatacccaca ccccacgcaa aattaaaatt
      121 ttgcagattc cttatttaca acaatgggtt aatgaaaaat aaatgtgcgg tgatgtgtta
      181 caaagtgcag atccaagtcg tggacgactc tatggcgaat cgctgacgaa ttgcccacga
      241 ttcatatgtg aatcacgctt tattatcata ttgttatgat gaatcgactc ttgattcaat
      301 tcatcacttt gggtgttttt tgctcatggt gactcttgat tcaattcacg attcgaatcg
      361 ccggtgaatc gtgtggtgag tcgtccggcg acttgccata acgtgattgc cggccgtcga
      421 cgaacccgat tcctgaaggt gctgaaaacc ggttttccgg ctgcgccggc aacgcttcac
      481 ggccacgcaa taaattgcgt ccccgttcac cgttttcgga ggagaagaac gccggaaaca
      541 ggacttcccc tggctgaatg gtgtgaattt ccgcgctatg cacttgcgcg catactcatg
      601 catgccgtaa aaacagagcc tgcgcgtttc tggcgggttt tcgggtggtt tgttgcctgt
      661 tttaccggtt tcccgtcaga aacgtcctga gtccgtttta gcggtgcgta caattatgat
      721 tttatgttaa attgttttaa gtgaatagag agaatataac ttaagggagc atcttgtgct
      781 gggtctttta cattagatct gcacaatcat tgttttggca tctggtgatg tctttaggac
      841 gtttgagatt gctgataact aaagtgtatg atgctttcta tacgttatcc ggcgtttaat
      901 aacaccctgg tgataagcca gcccgtgaag ggctggcttg atttggattt atatttttga
      961 aataaaatct tttatttcat caaagcaatt gtctgctgtg tttattattc catttttcat
     1021 ggatattcct attcttgagt cggattctct attgcagcta agatagactt gtaccttagc
     1081 ttttttttcg tttgttggat aagtgtactc tttgtcactc gctgagatgt catctttatt
     1141 atttttaatt ttttcgaaaa attctattat gtattcatat aacgctcgag tgcttgcgtg
     1201 ttcaattatc agatcttcaa tggcaccttg cttgtctttt cctggcatta taaagaaaga
     1261 aatttttgta ttgccattca tagctatctc gttatgcgag ctgggggagg agatttgtag
     1321 ttctcgcaat gtggcaatta ttgatctttc tgtgtcagaa aatgatgtgt cagcatctaa
     1381 tataataaaa atactttctt tttcatcgaa agaatcaatg tttttgaatg ctctaagtgc
     1441 ttgttttaat tttgattttc catttatttt ttcgacaaaa acatcggtaa tgccttgtat
     1501 ttcaagtagg ttgcatagaa aatgaaaatc atcatcaccc tcaacgaaaa tgatcttttt
     1561 gctattattt atgtctttca ttatcttacc tcccagtcgt tctcaactga gtaggagaaa
     1621 tcatccatat tgaattgtac ggctgttggt tttagggagt tcttttctct tcctagtcta
     1681 atataagcga tatcttcatt tttgctatct atttcgttta ttgctcgtat cacatcttga
     1741 ctatgagttg ttgcaaatat ttgattgttg ttttgttttg cagatgaaat taatgatttt
     1801 attatgtctt taattactga gtaatgtatt ccgttctcga tttcatcaat aagaataatt
     1861 gagttttcct gtaccagcac tgagctgata aaagataatg ctcgactgat accctcgcca
     1921 agcattgata tttcatttag ctcactaaat ccaatgtcta aatatatttc cttattgtta
     1981 cctatcgcag atattgctat atctacaatt ctgtcatcta ttttttttaa gttttctagt
     2041 atgtcttttt tccttttttg tgttagtagg ctagatacat ttgtaattgt tgcctctttg
     2101 tttatctttc tggatgttgt tattattgtt gctgtcttaa atttataatt aatcccatcc
     2161 ctttcgtttt ttatttcgga ttttatttct acgccatctt ctttcaattg catagagaaa
     2221 agcttattgg aaaccctgtt tttcgcattg ggtgtctcgg tcacatttat ttttaaagag
     2281 tttactgtgg cctgagaacc gatagtttga cgaggtatgt tttggttaga tagtacggtg
     2341 tcaacgttta gagacaaact tgattctaat ctctgatttg tttctgtttc atatgtttgt
     2401 gttacttcag agcgttcatc tcgaatgact atggacatct tttgtgatgt gtccatatca
     2461 tgaaagtaac taacccaaaa tggcttgttt ttgtttattt ctgccatttc ttttctgaat
     2521 gcttgaatgt ttaacaaaac agccgggttt tttacatcat aaaaacaaaa aatagcatcc
     2581 agtatagatg ttttcccgta gttgtttttc ccagctatga tatttaaagt ctttaattgc
     2641 tttagatata gctcattgaa gcatttgaag ttctttaaac ttatttcctt tatcatgata
     2701 gcctctgttc gtgtttttgt tatatgccat acgatttgtt agtaccttaa taaaatgtac
     2761 agctttcatt gtgattagct agactttatg tcaaagatta actttgattg cttgtgtttt
     2821 aatcgatttt ttttactttc ttcttgagat tatctggcag cagccgtaag cttccggctg
     2881 tgaacgaaaa aaaccgcctt ggcgggcggt tttttcgaaa ggttcagtag agttggcgct
     2941 ctatgaaccg aggtaactgg cttaaaggga gcgcagtcac caaaactgtt cgtttagttt
     3001 agctttaact ggcgtataac ttcaagacta actccctaaa tcagttacca gtggctgctg
     3061 ccagtggcgc tttgtcgtgt ctttccgggt tggactcaag acgatagtta ccggattagg
     3121 cgcagcagtc ggactgaacg gggggttcgt gcatacagtc cagcttggag cgaactgcct
     3181 acccggaact gagtgtcagg cgtggaatga gacaaacgcg gccataacag cggaatgaca
     3241 ccggtaaacc gaaaggcagg aacaggagag cgcacgaggg agccatcagg gggaaacgcc
     3301 tggtatcttt atagtcctgt cgggtttcgc caccactgat ttgagcgtca gattccgtga
     3361 tgctcgtcag gggggcggag cctatggaaa aacggccgct gtgcggcctt tccttctttc
     3421 ctccatgcga ttactcggtt ttctcgagcg tttctacgca tgctcctgcc gctcgccgca
     3481 gccgaacggc aggagcgtag cgactgagtg agcgaggaag cggaaaagag gagatcccta
     3541 cactgaccac tgacgctctg aggcctctta tgacgaaaca acagaaaaca gcgctgaaca
     3601 tggctaaatt catccagaat cagtctctgc tcctgctgga gaagcttaac gagcttgatc
     3661 tcgatgtcga ggccgacctt tgtgagaaac tccacgatga tgcggagcat cttttccgta
     3721 cactgtcctc gagactggat gcattacagg atggtaactg atggccagag tgtctattag
     3781 tgaggctgcc cgactgacgg gtaagagtag aacaacactg cacaggttaa ttaaagcagg
     3841 tgacctgtcc acctgtagcg gtgagcgcaa tgcaaaaatg gtagatactt cagagctttt
     3901 acgtgtcttt ggcccctttg agcaaccgaa gggtgaacac cattctggac aggtctctgg
     3961 acagcgtgat acagcctctg ctgaccagag tgaacaggtg atccgtcatc tgaaacagga
     4021 gattgaacac ctgaacacct tacttttgtc caaggattcg cacattgaca gcctgaaaca
     4081 ggccatgctc cttcttgaaa atcaccaggc aaaattaact gaatccccgg cgccatggtg
     4141 gaaattctgg aaaaaatcct gaccccg
//
