LOCUS       NZ_CP098139             4167 bp    DNA     circular CON 25-JUN-2024
DEFINITION  Klebsiella pneumoniae strain Z0117KP0027 plasmid pZ0117KP0027-4,
            complete sequence.
ACCESSION   NZ_CP098139
VERSION     NZ_CP098139.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28703771
            Assembly: GCF_023657675.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4167)
  AUTHORS   Yoon,E.-J., Choi,Y.J., Won,D., Choi,J.R. and Jeong,S.H.
  TITLE     Klebsiella pneumoniae, a One Health interface shuttle organism for
            the genes of CTX-M ESBL
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4167)
  AUTHORS   Yoon,E.-J., Choi,Y.J., Won,D., Choi,J.R. and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2022) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, Gangnam Severance Hospital,
            Yonsei, Seoul, Select One 06273, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: other: SMRTLink v. v10.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 124x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023657675.1-RS_2024_06_25
            Annotation Date                   :: 06/25/2024 04:42:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,758
            CDSs (total)                      :: 5,636
            Genes (coding)                    :: 5,497
            CDSs (with protein)               :: 5,497
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 51 of 139
            Pseudo Genes (incomplete)         :: 90 of 139
            Pseudo Genes (internal stop)      :: 20 of 139
            Pseudo Genes (multiple problems)  :: 19 of 139
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP098139.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="Z0117KP0027"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:573"
                     /plasmid="pZ0117KP0027-4"
                     /geo_loc_name="South Korea"
                     /collection_date="2017-09"
     gene            join(3783..4167,1..17)
                     /locus_tag="NBY52_RS28675"
                     /old_locus_tag="NBY52_28665"
     CDS             join(3783..4167,1..17)
                     /locus_tag="NBY52_RS28675"
                     /old_locus_tag="NBY52_28665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(363..605)
                     /locus_tag="NBY52_RS28680"
                     /old_locus_tag="NBY52_28670"
     CDS             complement(363..605)
                     /locus_tag="NBY52_RS28680"
                     /old_locus_tag="NBY52_28670"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_098963735.1"
                     /translation="MHSAEIHTIQPGEVLFPAFFSSENGERGRNLLRGREALPAQPENR
                     FSAPSGIGFVDGRQSRYGKSPDDSPHDSPAIRIVN"
                     /name="hypothetical protein"
     gene            complement(971..1603)
                     /locus_tag="NBY52_RS28685"
                     /old_locus_tag="NBY52_28675"
     CDS             complement(971..1603)
                     /locus_tag="NBY52_RS28685"
                     /old_locus_tag="NBY52_28675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_012579086.1"
                     /translation="MKDINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIDSFDEKESIFIILDADTSFSDTERSIIATLRELQISSPSSHNEIAMNGN
                     TKISFFIMPGKDKQGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDDISASDKEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKDFISKI"
                     /name="DUF3226 domain-containing protein"
     gene            complement(1603..2718)
                     /locus_tag="NBY52_RS28690"
                     /old_locus_tag="NBY52_28680"
     CDS             complement(1603..2718)
                     /locus_tag="NBY52_RS28690"
                     /old_locus_tag="NBY52_28680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_012579087.1"
                     /translation="MIKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKNRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGINYKFKTATIITTSRKINKEATITNVSSLLTQKRKKDILEN
                     LKKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            complement(3063..3176)
                     /locus_tag="NBY52_RS28695"
                     /old_locus_tag="NBY52_28685"
                     /pseudo=""
     CDS             complement(3063..3176)
                     /locus_tag="NBY52_RS28695"
                     /old_locus_tag="NBY52_28685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            3592..3783
                     /locus_tag="NBY52_RS28700"
                     /old_locus_tag="NBY52_28690"
     CDS             3592..3783
                     /locus_tag="NBY52_RS28700"
                     /old_locus_tag="NBY52_28690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(3064..3471)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.399"
                     /coverage="99.0"
                     /evalue="5.92e-171"
ORIGIN
        1 tctggaaaaa atcctgaccc cgtcatgctt cagttttcct ctccggccat cccagggagt
       61 tcctgaacct tcccaaaaat cgtcagatct ctgaacgctc ctcaccacta aaaataccca
      121 caccccacgc aaaattaaaa ttttgcagat tccttattta caacaatggg ttaatgaaaa
      181 ataaatgtgc ggtgatgtgt tacaaagtgc agatccaagt cgtggacgac tctatggcga
      241 atcgctgacg aattgcccac gattcatatg tgaatcacgc tttattatca tattgttatg
      301 atgaatcgac tcttgattca attcatcact ttgggtgttt tttgctcatg gtgactcttg
      361 attcaattca cgattcgaat cgccggtgaa tcgtgtggtg agtcgtccgg cgacttgcca
      421 taacgtgatt gccggccgtc gacgaacccg attcctgaag gtgctgaaaa ccggttttcc
      481 ggctgcgccg gcaacgcttc acggccacgc aataaattgc gtccccgttc accgttttcg
      541 gaggagaaga acgccggaaa caggacttcc cctggctgaa tggtgtgaat ttccgcgcta
      601 tgcacttgcg cgcatactca tgcatgccgt aaaaacagag cctgcgcgtt tctggcgggt
      661 tttcgggtgg tttgttgcct gttttaccgg tttcccgtca gaaacgtcct gagtccgttt
      721 tagcggtgcg tacaattatg attttatgtt aaattgtttt aagtgaatag agagaatata
      781 acttaaggga gcatcttgtg ctgggtcttt tacattagat ctgcacaatc attgttttgg
      841 catctggtga tgtctttagg acgtttgaga ttgctgataa ctaaagtgta tgatgctttc
      901 tatacgttat ccggcgttta ataacaccct ggtgataagc cagcccgtga agggctggct
      961 tgatttggat ttatattttt gaaataaaat cttttatttc atcaaagcaa ttgtctgctg
     1021 tgtttattat tccatttttc atggatattc ctattcttga gtcggattct ctattgcagc
     1081 taagatagac ttgtacctta gctttttttt cgtttgttgg ataagtgtac tctttgtcac
     1141 tcgctgagat gtcatcttta ttatttttaa ttttttcgaa aaattctatt atgtattcat
     1201 ataacgctcg agtgcttgcg tgttcaatta tcagatcttc aatggcacct tgcttgtctt
     1261 ttcctggcat tataaagaaa gaaatttttg tattgccatt catagctatc tcgttatgcg
     1321 agctggggga ggagatttgt agttctcgca atgtggcaat tattgatctt tctgtgtcag
     1381 aaaatgatgt gtcagcatct aatataataa aaatactttc tttttcatcg aaagaatcaa
     1441 tgtttttgaa tgctctaagt gcttgtttta attttgattt tccatttatt ttttcgacaa
     1501 aaacatcggt aatgccttgt atttcaagta ggttgcatag aaaatgaaaa tcatcatcac
     1561 cctcaacgaa aatgatcttt ttgctattat ttatgtcttt cattatctta cctcccagtc
     1621 gttctcaact gagtaggaga aatcatccat attgaattgt acggctgttg gttttaggga
     1681 gttcttttct cttcctagtc taatataagc gatatcttca tttttgctat ctatttcgtt
     1741 tattgctcgt atcacatctt gactatgagt tgttgcaaat atttgattgt tgttttgttt
     1801 tgcagatgaa attaatgatt ttattatgtc tttaattact gagtaatgta ttccgttctc
     1861 gatttcatca ataagaataa ttgagttttc ctgtaccagc actgagctga taaaagataa
     1921 tgctcgactg ataccctcgc caagcattga tatttcattt agctcactaa atccaatgtc
     1981 taaatatatt tccttattgt tacctatcgc agatattgct atatctacaa ttctgtcatc
     2041 tatttttttt aagttttcta gtatgtcttt tttccttttt tgtgttagta ggctagatac
     2101 atttgtaatt gttgcctctt tgtttatctt tctggatgtt gttattattg ttgctgtctt
     2161 aaatttataa ttaatcccat ccctttcgtt ttttatttcg gattttattt ctacgccatc
     2221 ttctttcaat tgcatagaga aaagcttatt ggaaaccctg tttttcgcat tgggtgtctc
     2281 ggtcacattt atttttaaag agtttactgt ggcctgagaa ccgatagttt gacgaggtat
     2341 gttttggtta gatagtacgg tgtcaacgtt tagagacaaa cttgattcta atctctgatt
     2401 tgtttctgtt tcatatgttt gtgttacttc agagcgttca tctcgaatga ctatggacat
     2461 cttttgtgat gtgtccatat catgaaagta actaacccaa aatggcttgt ttttgtttat
     2521 ttctgccatt tcttttctga atgcttgaat gtttaacaaa acagccgggt tttttacatc
     2581 ataaaaacaa aaaatagcat ccagtataga tgttttcccg tagttgtttt tcccagctat
     2641 gatatttaaa gtctttaatt gctttagata tagctcattg aagcatttga agttctttaa
     2701 acttatttcc tttatcatga tagcctctgt tcgtgttttt gttatatgcc atacgatttg
     2761 ttagtacctt aataaaatgt acagctttca ttgtgattag ctagacttta tgtcaaagat
     2821 taactttgat tgcttgtgtt ttaatcgatt ttttttactt tcttcttgag attatctggc
     2881 agcagccgta agcttccggc tgtgaacgaa aaaaaccgcc ttggcgggcg gttttttcga
     2941 aaggttcagt agagttggcg ctctatgaac cgaggtaact ggcttaaagg gagcgcagtc
     3001 accaaaactg ttcgtttagt ttagctttaa ctggcgtata acttcaagac taactcccta
     3061 aatcagttac cagtggctgc tgccagtggc gctttgtcgt gtctttccgg gttggactca
     3121 agacgatagt taccggatta ggcgcagcag tcggactgaa cggggggttc gtgcatacag
     3181 tccagcttgg agcgaactgc ctacccggaa ctgagtgtca ggcgtggaat gagacaaacg
     3241 cggccataac agcggaatga caccggtaaa ccgaaaggca ggaacaggag agcgcacgag
     3301 ggagccatca gggggaaacg cctggtatct ttatagtcct gtcgggtttc gccaccactg
     3361 atttgagcgt cagattccgt gatgctcgtc aggggggcgg agcctatgga aaaacggccg
     3421 ctgtgcggcc tttccttctt tcctccatgc gattactcgg ttttctcgag cgtttctacg
     3481 catgctcctg ccgctcgccg cagccgaacg gcaggagcgt agcgactgag tgagcgagga
     3541 agcggaaaag aggagatccc tacactgacc actgacgctc tgaggcctct tatgacgaaa
     3601 caacagaaaa cagcgctgaa catggctaaa ttcatccaga atcagtctct gctcctgctg
     3661 gagaagctta acgagcttga tctcgatgtc gaggccgacc tttgtgagaa actccacgat
     3721 gatgcggagc atcttttccg tacactgtcc tcgagactgg atgcattaca ggatggtaac
     3781 tgatggccag agtgtctatt agtgaggctg cccgactgac gggtaagagt agaacaacac
     3841 tgcacaggtt aattaaagca ggtgacctgt ccacctgtag cggtgagcgc aatgcaaaaa
     3901 tggtagatac ttcagagctt ttacgtgtct ttggcccctt tgagcaaccg aagggtgaac
     3961 accattctgg acaggtctct ggacagcgtg atacagcctc tgctgaccag agtgaacagg
     4021 tgatccgtca tctgaaacag gagattgaac acctgaacac cttacttttg tccaaggatt
     4081 cgcacattga cagcctgaaa caggccatgc tccttcttga aaatcaccag gcaaaattaa
     4141 ctgaatcccc ggcgccatgg tggaaat
//
