LOCUS       NZ_CP098126             4167 bp    DNA     circular CON 25-JUN-2024
DEFINITION  Klebsiella pneumoniae strain Z0117KP0042 plasmid pZ0117KP0042-3,
            complete sequence.
ACCESSION   NZ_CP098126
VERSION     NZ_CP098126.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28703774
            Assembly: GCF_023657615.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4167)
  AUTHORS   Yoon,E.-J., Choi,Y.J., Won,D., Choi,J.R. and Jeong,S.H.
  TITLE     Klebsiella pneumoniae, a One Health interface shuttle organism for
            the genes of CTX-M ESBL
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4167)
  AUTHORS   Yoon,E.-J., Choi,Y.J., Won,D., Choi,J.R. and Jeong,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2022) Research Institute of Bacterial Resistance,
            Yonsei University College of Medicine, Gangnam Severance Hospital,
            Yonsei, Seoul, Select One 06273, South Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: other: SMRTLink v. v10.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 169x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023657615.1-RS_2024_06_25
            Annotation Date                   :: 06/25/2024 04:19:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,431
            CDSs (total)                      :: 5,309
            Genes (coding)                    :: 5,169
            CDSs (with protein)               :: 5,169
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 59 of 140
            Pseudo Genes (incomplete)         :: 78 of 140
            Pseudo Genes (internal stop)      :: 21 of 140
            Pseudo Genes (multiple problems)  :: 16 of 140
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP098126.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="Z0117KP0042"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:573"
                     /plasmid="pZ0117KP0042-3"
                     /geo_loc_name="South Korea"
                     /collection_date="2017-11"
     gene            join(4057..4167,1..1005)
                     /locus_tag="NBY58_RS27010"
                     /old_locus_tag="NBY58_26995"
     CDS             join(4057..4167,1..1005)
                     /locus_tag="NBY58_RS27010"
                     /old_locus_tag="NBY58_26995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_012579087.1"
                     /translation="MIKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKNRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGINYKFKTATIITTSRKINKEATITNVSSLLTQKRKKDILEN
                     LKKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            1005..1637
                     /locus_tag="NBY58_RS27015"
                     /old_locus_tag="NBY58_27000"
     CDS             1005..1637
                     /locus_tag="NBY58_RS27015"
                     /old_locus_tag="NBY58_27000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_012579086.1"
                     /translation="MKDINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIDSFDEKESIFIILDADTSFSDTERSIIATLRELQISSPSSHNEIAMNGN
                     TKISFFIMPGKDKQGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDDISASDKEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKDFISKI"
                     /name="DUF3226 domain-containing protein"
     gene            2003..2245
                     /locus_tag="NBY58_RS27020"
                     /old_locus_tag="NBY58_27005"
     CDS             2003..2245
                     /locus_tag="NBY58_RS27020"
                     /old_locus_tag="NBY58_27005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_098963735.1"
                     /translation="MHSAEIHTIQPGEVLFPAFFSSENGERGRNLLRGREALPAQPENR
                     FSAPSGIGFVDGRQSRYGKSPDDSPHDSPAIRIVN"
                     /name="hypothetical protein"
     gene            complement(2591..2992)
                     /locus_tag="NBY58_RS27025"
                     /old_locus_tag="NBY58_27010"
     CDS             complement(2591..2992)
                     /locus_tag="NBY58_RS27025"
                     /old_locus_tag="NBY58_27010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2992..3183)
                     /locus_tag="NBY58_RS27030"
                     /old_locus_tag="NBY58_27015"
     CDS             complement(2992..3183)
                     /locus_tag="NBY58_RS27030"
                     /old_locus_tag="NBY58_27015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3599..3712
                     /locus_tag="NBY58_RS27035"
                     /old_locus_tag="NBY58_27020"
                     /pseudo=""
     CDS             3599..3712
                     /locus_tag="NBY58_RS27035"
                     /old_locus_tag="NBY58_27020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     Typing          3305..3712
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.399"
                     /coverage="99.0"
                     /evalue="5.92e-171"
ORIGIN
        1 atactggatg ctattttttg tttttatgat gtaaaaaacc cggctgtttt gttaaacatt
       61 caagcattca gaaaagaaat ggcagaaata aacaaaaaca agccattttg ggttagttac
      121 tttcatgata tggacacatc acaaaagatg tccatagtca ttcgagatga acgctctgaa
      181 gtaacacaaa catatgaaac agaaacaaat cagagattag aatcaagttt gtctctaaac
      241 gttgacaccg tactatctaa ccaaaacata cctcgtcaaa ctatcggttc tcaggccaca
      301 gtaaactctt taaaaataaa tgtgaccgag acacccaatg cgaaaaacag ggtttccaat
      361 aagcttttct ctatgcaatt gaaagaagat ggcgtagaaa taaaatccga aataaaaaac
      421 gaaagggatg ggattaatta taaatttaag acagcaacaa taataacaac atccagaaag
      481 ataaacaaag aggcaacaat tacaaatgta tctagcctac taacacaaaa aaggaaaaaa
      541 gacatactag aaaacttaaa aaaaatagat gacagaattg tagatatagc aatatctgcg
      601 ataggtaaca ataaggaaat atatttagac attggattta gtgagctaaa tgaaatatca
      661 atgcttggcg agggtatcag tcgagcatta tcttttatca gctcagtgct ggtacaggaa
      721 aactcaatta ttcttattga tgaaatcgag aacggaatac attactcagt aattaaagac
      781 ataataaaat cattaatttc atctgcaaaa caaaacaaca atcaaatatt tgcaacaact
      841 catagtcaag atgtgatacg agcaataaac gaaatagata gcaaaaatga agatatcgct
      901 tatattagac taggaagaga aaagaactcc ctaaaaccaa cagccgtaca attcaatatg
      961 gatgatttct cctactcagt tgagaacgac tgggaggtaa gataatgaaa gacataaata
     1021 atagcaaaaa gatcattttc gttgagggtg atgatgattt tcattttcta tgcaacctac
     1081 ttgaaataca aggcattacc gatgtttttg tcgaaaaaat aaatggaaaa tcaaaattaa
     1141 aacaagcact tagagcattc aaaaacattg attctttcga tgaaaaagaa agtattttta
     1201 ttatattaga tgctgacaca tcattttctg acacagaaag atcaataatt gccacattgc
     1261 gagaactaca aatctcctcc cccagctcgc ataacgagat agctatgaat ggcaatacaa
     1321 aaatttcttt ctttataatg ccaggaaaag acaagcaagg tgccattgaa gatctgataa
     1381 ttgaacacgc aagcactcga gcgttatatg aatacataat agaatttttc gaaaaaatta
     1441 aaaataataa agatgacatc tcagcgagtg acaaagagta cacttatcca acaaacgaaa
     1501 aaaaagctaa ggtacaagtc tatcttagct gcaatagaga atccgactca agaataggaa
     1561 tatccatgaa aaatggaata ataaacacag cagacaattg ctttgatgaa ataaaagatt
     1621 ttatttcaaa aatataaatc caaatcaagc cagcccttca cgggctggct tatcaccagg
     1681 gtgttattaa acgccggata acgtatagaa agcatcatac actttagtta tcagcaatct
     1741 caaacgtcct aaagacatca ccagatgcca aaacaatgat tgtgcagatc taatgtaaaa
     1801 gacccagcac aagatgctcc cttaagttat attctctcta ttcacttaaa acaatttaac
     1861 ataaaatcat aattgtacgc accgctaaaa cggactcagg acgtttctga cgggaaaccg
     1921 gtaaaacagg caacaaacca cccgaaaacc cgccagaaac gcgcaggctc tgtttttacg
     1981 gcatgcatga gtatgcgcgc aagtgcatag cgcggaaatt cacaccattc agccagggga
     2041 agtcctgttt ccggcgttct tctcctccga aaacggtgaa cggggacgca atttattgcg
     2101 tggccgtgaa gcgttgccgg cgcagccgga aaaccggttt tcagcacctt caggaatcgg
     2161 gttcgtcgac ggccggcaat cacgttatgg caagtcgccg gacgactcac cacacgattc
     2221 accggcgatt cgaatcgtga attgaatcaa gagtcaccat gagcaaaaaa cacccaaagt
     2281 gatgaattga atcaagagtc gattcatcat aacaatatga taataaagcg tgattcacat
     2341 atgaatcgtg ggcaattcgt cagcgattcg ccatagagtc gtccacgact tggatctgca
     2401 ctttgtaaca catcaccgca catttatttt tcattaaccc attgttgtaa ataaggaatc
     2461 tgcaaaattt taattttgcg tggggtgtgg gtatttttag tggtgaggag cgttcagaga
     2521 tctgacgatt tttgggaagg ttcaggaact ccctgggatg gccggagagg aaaactgaag
     2581 catgacgggg tcaggatttt ttccagaatt tccaccatgg cgccggggat tcagttaatt
     2641 ttgcctggtg attttcaaga aggagcatgg cctgtttcag gctgtcaatg tgcgaatcct
     2701 tggacaaaag taaggtgttc aggtgttcaa tctcctgttt cagatgacgg atcacctgtt
     2761 cactctggtc agcagaggct gtatcacgct gtccagagac ctgtccagaa tggtgttcac
     2821 ccttcggttg ctcaaagggg ccaaagacac gtaaaagctc tgaagtatct accatttttg
     2881 cattgcgctc accgctacag gtggacaggt cacctgcttt aattaacctg tgcagtgttg
     2941 ttctactctt acccgtcagt cgggcagcct cactaataga cactctggcc atcagttacc
     3001 atcctgtaat gcatccagtc tcgaggacag tgtacggaaa agatgctccg catcatcgtg
     3061 gagtttctca caaaggtcgg cctcgacatc gagatcaagc tcgttaagct tctccagcag
     3121 gagcagagac tgattctgga tgaatttagc catgttcagc gctgttttct gttgtttcgt
     3181 cataagaggc ctcagagcgt cagtggtcag tgtagggatc tcctcttttc cgcttcctcg
     3241 ctcactcagt cgctacgctc ctgccgttcg gctgcggcga gcggcaggag catgcgtaga
     3301 aacgctcgag aaaaccgagt aatcgcatgg aggaaagaag gaaaggccgc acagcggccg
     3361 tttttccata ggctccgccc ccctgacgag catcacggaa tctgacgctc aaatcagtgg
     3421 tggcgaaacc cgacaggact ataaagatac caggcgtttc cccctgatgg ctccctcgtg
     3481 cgctctcctg ttcctgcctt tcggtttacc ggtgtcattc cgctgttatg gccgcgtttg
     3541 tctcattcca cgcctgacac tcagttccgg gtaggcagtt cgctccaagc tggactgtat
     3601 gcacgaaccc cccgttcagt ccgactgctg cgcctaatcc ggtaactatc gtcttgagtc
     3661 caacccggaa agacacgaca aagcgccact ggcagcagcc actggtaact gatttaggga
     3721 gttagtcttg aagttatacg ccagttaaag ctaaactaaa cgaacagttt tggtgactgc
     3781 gctcccttta agccagttac ctcggttcat agagcgccaa ctctactgaa cctttcgaaa
     3841 aaaccgcccg ccaaggcggt ttttttcgtt cacagccgga agcttacggc tgctgccaga
     3901 taatctcaag aagaaagtaa aaaaaatcga ttaaaacaca agcaatcaaa gttaatcttt
     3961 gacataaagt ctagctaatc acaatgaaag ctgtacattt tattaaggta ctaacaaatc
     4021 gtatggcata taacaaaaac acgaacagag gctatcatga taaaggaaat aagtttaaag
     4081 aacttcaaat gcttcaatga gctatatcta aagcaattaa agactttaaa tatcatagct
     4141 gggaaaaaca actacgggaa aacatct
//
