LOCUS       NZ_CP097856             2097 bp    DNA     circular CON 05-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain SSSE-03
            plasmid pSSSE-03_c_RI, complete sequence.
ACCESSION   NZ_CP097856
VERSION     NZ_CP097856.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08387019
            Assembly: GCF_036821985.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Chaturongakul,S. and Supa-Amornkul,S.
  TITLE     Genotypic and phenotypic characterization of multidrug resistant
            Salmonella Kentucky in Thailand
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Chaturongakul,S. and Supa-Amornkul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2022) Microbiology, Mahidol University, Rama VI,
            Thung Phaya Thai, Bangkok 10400, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 26-MAR-2022
            Assembly Method                   :: Unicycler v. 0.4.8.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 218.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036821985.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 15:54:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,740
            CDSs (total)                      :: 4,623
            Genes (coding)                    :: 4,505
            CDSs (with protein)               :: 4,505
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 38 of 118
            Pseudo Genes (incomplete)         :: 84 of 118
            Pseudo Genes (internal stop)      :: 22 of 118
            Pseudo Genes (multiple problems)  :: 24 of 118
            Pseudo Genes (short protein)      :: 1 of 118
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP097856.1.
            Bacteria and source DNA available from Institute of Molecular
            Biosciences, Mahidol University, Bangkok, Thailand.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="SSSE-03"
                     /serovar="Kentucky"
                     /isolation_source="cloacal swab live chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pSSSE-03_c_RI"
                     /geo_loc_name="Thailand"
                     /collection_date="2016-10-27"
                     /collected_by="Department of Microbiology, Faculty of
                     Science, Mahidol University"
     gene            88..1077
                     /locus_tag="NAB19_RS23700"
                     /old_locus_tag="NAB19_23685"
     CDS             88..1077
                     /locus_tag="NAB19_RS23700"
                     /old_locus_tag="NAB19_23685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001362017.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          1080..1161
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(804..995)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 ttcgaattgg tgatacgact aacacaacag gtgatatggc aatgataaca cgtcagatga
       61 gccatcgccc actatcgggt ggtgcgcatg aaaaaccctg atctccagaa cctcacggac
      121 tattccccct cagatgcgcc ctgggacgct cacagaagcg tttctgatga cgtgggaggg
      181 atttacctgc ttgcagccga atatgagcgc tacggggcgc gtatggccct ctgtggtggt
      241 ttactgcgtt tcgggtggtc taccctcaag gaaaccggag aaacgcgtct gaggctgcgt
      301 gaggcgcatt tctgccgtgt ccggcattgt cctgtctgcc agtggaggcg ctccctgatg
      361 tggcaagccc gtttctacca gtccctgccg cgtatcgtgg cggattatcc cgatgcccgc
      421 tggatgttcc tgactctgac cgtgcgcaac tgtgcgatcg gggagctggg cgagatgctg
      481 aaccggatga atgcagcttt tcagcgcatg aaggttcgca aggagttccg gcctgtgcag
      541 ggctggatac gtaccacgga agtcacccgc gggagcgacg gcagcgcaca cccgcacttc
      601 cacaccctga tgatggtgcc gcctggcatg ctaaatggga aaagttacgt caggcatgaa
      661 cgctgggttg aactctggcg ggagtgtctg cgggtcgatt atgacccgaa tgttgatgtc
      721 cgggcagtga aacctcgtaa gccgaaggac ggcgaatcgc tggcctgcgc gaccgccgaa
      781 ctggtgcgcg gtgcggtggc cgaaaccctg aaatattcca cgaagccggc tgacatggtg
      841 gccgatcctg aatggttcct cgaactgact cgccagacgc acaaacgccg ctttgtggcg
      901 accggcggcg cactcaaaga cgtgctgaaa ctcgatcagg aaaccgacgc cgacatggtg
      961 atcggggatg atatttccga gggcgacgat gacggttcac gcatcgcgtt cgagtggaaa
     1021 accgaggtca gaaagtaccg tcgctcaccg acgaaagata aaactgaatc aggctagcgg
     1081 ggtgtcgggg tgcacccctg accagatggc aattgtgata gcgtcgcgtg tgacggtatt
     1141 acaattacac atcctgtccc gaaaattccc gccgtttctc ggttttttga gcgtcgcaga
     1201 ccgcacgaca aacgaaccta aggtgagttt gtataagtgc gcacttcgtg agattccctg
     1261 actgccagtt tgtcgattgc gcggaacggc tgcggcacga aaacggcaaa atgatttact
     1321 cgccgtttgt gtgggttgtt ttgtggggtg tcaatggggt tgtggtcttt tttgtgggtt
     1381 aaagtgtggg tgattgtgtg ggctgtgtgt tttgagttgt gggtgattat gtgggtcatt
     1441 gtgtgggctg tatgcacggc atttttttgt tctcctaaaa cacaggcacg ataagcggcg
     1501 tacacaaaac ggggcgtttc gctccgtcgc ttgtgccaaa ggggacaccc ctttgcaacc
     1561 ctgtgcggtt ctacgaacca ggtcaggact gcgccccgac accccgccaa cgcctcacgg
     1621 aacgcgaaaa aattccgcgt accgttcacc gttccctgat tcgtcaaaca gaaaatcgcg
     1681 ggggcccgcg cctccggcgt gggttccgat tttgtgattg acgacggcac gggaaaaaca
     1741 ctggggatgg tggttggtgt cacggagtga ggccaaccac ctgcaagacg gttttttttt
     1801 gttgttcaca aaatcggggt gaaagtctgt ggatgagatg ggtgtaagtg ggtggggttg
     1861 ggtgttttgg gttactgaaa atcccgctca aaattcaagc gaatctcgcg cgcgatcctt
     1921 gtatttatac ttaagggata actctaggat tcaaattcgc ctccagccct tgtgccgcaa
     1981 ggcctgaagg gggatttgtc ggaaaatggt tttggagtta ttctgtcggg agtggtcgca
     2041 ttaaaagcga cccccgcaac gagggcaatc gttcgggggt gtgaccacct gtaggaa
//
