LOCUS       NZ_CP097851             2257 bp    DNA     circular CON 05-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain SSSE-01
            plasmid pSSSE-01_b_RI, complete sequence.
ACCESSION   NZ_CP097851
VERSION     NZ_CP097851.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08386833
            Assembly: GCF_036820215.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Chaturongakul,S. and Supa-Amornkul,S.
  TITLE     Genotypic and phenotypic characterization of multidrug resistant
            Salmonella Kentucky in Thailand
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Chaturongakul,S. and Supa-Amornkul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2022) Microbiology, Mahidol University, Rama VI,
            Thung Phaya Thai, Bangkok 10400, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 22-MAR-2022
            Assembly Method                   :: Unicycler v. 0.4.8.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 262.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036820215.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 15:53:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,745
            CDSs (total)                      :: 4,625
            Genes (coding)                    :: 4,494
            CDSs (with protein)               :: 4,494
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 51 of 131
            Pseudo Genes (incomplete)         :: 84 of 131
            Pseudo Genes (internal stop)      :: 23 of 131
            Pseudo Genes (multiple problems)  :: 25 of 131
            Pseudo Genes (short protein)      :: 1 of 131
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP097851.1.
            Bacteria and source DNA available from Institute of Molecular
            Biosciences, Mahidol University, Bangkok, Thailand.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="SSSE-01"
                     /serovar="Kentucky"
                     /isolation_source="cloacal swab live chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pSSSE-01_b_RI"
                     /geo_loc_name="Thailand"
                     /collection_date="2016-10-27"
                     /collected_by="Department of Microbiology, Faculty of
                     Science, Mahidol University"
     gene            join(2057..2257,1..789)
                     /locus_tag="M9201_RS23715"
                     /old_locus_tag="M9201_23695"
     CDS             join(2057..2257,1..789)
                     /locus_tag="M9201_RS23715"
                     /old_locus_tag="M9201_23695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_065898515.1"
                     /translation="MKNSELQYLTDYSPADKPWDEHRSISDDVGGIYLRAAGFERYGER
                     VEGCSGILRFGWSTNEETGETRLRLRDARFCRVRHCPICQWRRSLMWQARFYQSLPKIV
                     AEYPDARWLFLTLTVRNCPITELGDTLTVMNAAFQRLKDRKEFRGVLGWVRTTEVTRGK
                     DGNAHPHFHILLMVSPSMLSGDGYVKHARWVELWRDCLRVEYDPNVDIRVVKSRKPKDG
                     ESLPCSVVDQLRGVVVETLKYSTKPADMLVDPEWFLELTRQVHKRRFVATGGVLKDVLQ
                     LERETNEDLIMADGMAEGADDGSRLAFSWRAVAKKYRRDRTMDKPKQK"
                     /name="protein rep"
     gene            1419..1655
                     /locus_tag="M9201_RS23720"
                     /old_locus_tag="M9201_23700"
     CDS             1419..1655
                     /locus_tag="M9201_RS23720"
                     /old_locus_tag="M9201_23700"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_065898629.1"
                     /translation="MCNRITAHARLYDYHLVRASPRHPANASRSAKKFRVPLTVPELVK
                     QKIAGSRASGVGSDFVIDDGTGKILGMVVGVTE"
                     /name="hypothetical protein"
     Typing          complement(1405..1491)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.591"
                     /coverage="95.0"
                     /evalue="9.38e-33"
     Typing          complement(516..707)
                     /name="Col(MP18)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.083"
                     /coverage="100.0"
                     /evalue="6.45e-58"
ORIGIN
        1 ctgcggttac gtgatgcgcg gttctgtcgg gtccggcact gtccgatctg tcagtggagg
       61 cgttccctga tgtggcaagc ccgtttctat cagtccctgc caaagatcgt tgcggaatat
      121 cctgatgcac gctggctgtt cctgaccctg accgtccgta actgtccgat tacggagctt
      181 ggcgacaccc tgaccgtgat gaatgcggcc ttccagcgcc tgaaagatcg caaagagttt
      241 cgcggcgtgc tgggctgggt gcgcacgacg gaagtcaccc gtggcaagga cggcaatgcc
      301 catccccatt ttcatatcct gctgatggtt tccccttcga tgttgtctgg tgatggttat
      361 gtgaaacatg cccgatgggt ggagttgtgg cgcgactgtc tgcgggtgga gtatgacccg
      421 aacgtcgaca tcagggttgt gaagtccagg aaaccgaaag acggtgaatc gttgccctgt
      481 tctgtggtgg atcaactgcg cggggtggtg gttgaaacac tgaaatattc tacaaagccc
      541 gccgacatgc tggtcgatcc tgaatggttc ctagagttaa cacgccaggt acacaagcgc
      601 cgttttgtgg cgacgggtgg tgtgcttaag gacgttttgc aactggagcg ggaaacgaac
      661 gaggatttga ttatggcaga tggcatggca gagggtgcgg atgacggatc gcgtctggcg
      721 ttttcatggc gggcggtggc taaaaagtat cgccgcgatc gcacaatgga taagccaaaa
      781 cagaaataac atctaaaaat cgattttaag gcctctaaaa cgcgctcagg cgcgtttttt
      841 tattgcggta atgcaatttc atcgattcga cgcttcattg cgtcagaggc gtttttagcg
      901 cgcctctgac acgttggtta tcacggcaac agacttcgaa ggtttgccag aagcgcgcaa
      961 tgatttttta acgtgcattt ggcacggtgt cgagggtgtc ggggcgcagc cctgaccagg
     1021 tggggaatgt ctgagtgcgc gtgcgcggtc cgacattccc acatcctgtc ccgaaaattc
     1081 ccgccgtttc tcggtttttt gagcgtcgca gaccgcacga caaacgaaac gaagtgaagt
     1141 ttgtataagt gcacacttcg tgaatttctc tgactgtcag tttgtcgatc gcgcggaacg
     1201 gctgcgtcat gaaaacggca aaatgatttg ctgtccggtc gccgaaattt ttgcgtggct
     1261 gtggtggctg cggtgccaaa aatcatccgc gcgttaagtg cggatgcgta cttagtagtt
     1321 tctctccttc gtcgggaaac tgtgcgctcc tgcggagggg ttaacggcgc agaactgccg
     1381 atgctctgcc agcgttctgg cgaaaaaatc gggacaggat gtgtaatcgt ataaccgcgc
     1441 acgcacggtt atacgattac cacctggtca gggcttcgcc ccgacacccc gccaacgcct
     1501 cacggtccgc gaaaaaattc cgcgtaccgc tcaccgttcc cgaactcgtc aaacagaaaa
     1561 tcgcggggtc ccgcgcctcc ggcgtgggtt ccgattttgt gattgacgac ggcacgggga
     1621 agatactggg gatggtggtt ggtgtcacgg agtgaggcca accacctgtg aggcggtttt
     1681 tgttgttcac aaattcgggg tgaaagtctg tggatgagat gggtgtaagt gggtggggtg
     1741 tgtggctttg gggggctaaa aaatagctcg aaatttgagc aaatctcgcg cgcgatcctt
     1801 gtatttatac ttaagggata actctgggat tcaaatttgc ctctaaacct tgtcaggact
     1861 gggctgaacg gcaatttgct ccgaaatggt tttgagtgta ttttggtttt agcggtcaaa
     1921 aaataaaccc ccgcaacgat gggcgtcgtt cggggggatg accacctgca taaatccgat
     1981 tttttgtgac aaccaacagg tgatatggca atgataacac gtcaatcgtg ccatcgccca
     2041 gaatggggcg gtgggcatga aaaattctga acttcagtac ctgacggatt attcccctgc
     2101 ggacaaaccg tgggatgagc accggagtat ttccgacgat gtgggcggta tttatctgcg
     2161 ggctgccgga tttgaacgct acggcgaacg ggtggagggt tgtagcggca ttctgcgttt
     2221 cgggtggtcc accaacgagg aaaccggaga aacgcgc
//
