LOCUS       NZ_CP097850             4018 bp    DNA     circular CON 05-APR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain SSSE-01
            plasmid pSSSE-01_a_RI, complete sequence.
ACCESSION   NZ_CP097850
VERSION     NZ_CP097850.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08386833
            Assembly: GCF_036820215.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4018)
  AUTHORS   Chaturongakul,S. and Supa-Amornkul,S.
  TITLE     Genotypic and phenotypic characterization of multidrug resistant
            Salmonella Kentucky in Thailand
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4018)
  AUTHORS   Chaturongakul,S. and Supa-Amornkul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2022) Microbiology, Mahidol University, Rama VI,
            Thung Phaya Thai, Bangkok 10400, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 22-MAR-2022
            Assembly Method                   :: Unicycler v. 0.4.8.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 262.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036820215.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 15:53:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,745
            CDSs (total)                      :: 4,625
            Genes (coding)                    :: 4,494
            CDSs (with protein)               :: 4,494
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 51 of 131
            Pseudo Genes (incomplete)         :: 84 of 131
            Pseudo Genes (internal stop)      :: 23 of 131
            Pseudo Genes (multiple problems)  :: 25 of 131
            Pseudo Genes (short protein)      :: 1 of 131
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP097850.1.
            Bacteria and source DNA available from Institute of Molecular
            Biosciences, Mahidol University, Bangkok, Thailand.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4018
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="SSSE-01"
                     /serovar="Kentucky"
                     /isolation_source="cloacal swab live chicken"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pSSSE-01_a_RI"
                     /geo_loc_name="Thailand"
                     /collection_date="2016-10-27"
                     /collected_by="Department of Microbiology, Faculty of
                     Science, Mahidol University"
     gene            complement(80..292)
                     /locus_tag="M9201_RS23680"
                     /old_locus_tag="M9201_23665"
     CDS             complement(80..292)
                     /locus_tag="M9201_RS23680"
                     /old_locus_tag="M9201_23665"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_034169353.1"
                     /translation="MGDFERTFGAGADFDRIIDENNSEYFREDRRKTKNSKKKFSSFQD
                     ALVWAKANPGKTIIRSPDGVGFIEK"
                     /name="hypothetical protein"
     gene            complement(547..1074)
                     /locus_tag="M9201_RS23685"
                     /old_locus_tag="M9201_23670"
     CDS             complement(547..1074)
                     /locus_tag="M9201_RS23685"
                     /old_locus_tag="M9201_23670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004883515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016246513.1"
                     /translation="MKCFWACSVSVVLAMSFTVAAAENNDNVTYTKPSAGRDLYLTCKG
                     YQVKGASVINVEKPSYLEGTGEQVEFAIITPVGASDGLKVFFDSWGFSSFGLIESHVMH
                     EHWSLVHVGGRASVKGEKIDYSFVDNQPQEGGSYKPKTGVFLYGCMNSDKRPSWVEKIY
                     TRTGVFRGGIED"
                     /name="hypothetical protein"
     gene            complement(1203..1418)
                     /locus_tag="M9201_RS23690"
                     /old_locus_tag="M9201_23675"
     CDS             complement(1203..1418)
                     /locus_tag="M9201_RS23690"
                     /old_locus_tag="M9201_23675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_072048928.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSDQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1422..1907)
                     /locus_tag="M9201_RS23695"
                     /old_locus_tag="M9201_23680"
     CDS             complement(1422..1907)
                     /locus_tag="M9201_RS23695"
                     /old_locus_tag="M9201_23680"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_061390563.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMISQTWLTIVLVSALLIASSAGILWWQGQQIL
                     DNYTTIQEQKSTQAMLSEKNNGVQLTTCGEERRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1942..2646)
                     /locus_tag="M9201_RS23700"
                     /pseudo=""
     CDS             complement(<1942..2646)
                     /locus_tag="M9201_RS23700"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2585..2908)
                     /locus_tag="M9201_RS23705"
                     /old_locus_tag="M9201_23690"
     CDS             complement(2585..2908)
                     /locus_tag="M9201_RS23705"
                     /old_locus_tag="M9201_23690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024191642.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQICLDEKPSRAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGTGHDRVQVVAVLMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            3556..3669
                     /locus_tag="M9201_RS23710"
     CDS             3556..3669
                     /locus_tag="M9201_RS23710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072035093.1"
                     /translation="MHEPPVQSDRCALSGNYRLESNPERHDKTPLAAATGN"
                     /name="replication initiation protein"
     Typing          complement(3022..3199)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.222"
                     /coverage="83.0"
                     /evalue="4.5e-50"
     Typing          3146..3669
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.245"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(1112..2595)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.717"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gacactgtga aacatatgag tacgtatata gacagtgttg tccaaaaaat gactgttgtt
       61 ttacagtgaa tccactcttt catttttcaa taaaccccac accgtctgga gatcttatta
      121 tcgttttgcc aggattagct ttcgcccaaa ccaaagcatc ttgaaaagaa gagaattttt
      181 tttttgaatt tttagttttt cggcgatctt ctcgaaaata ttcgctgtta ttctcatcaa
      241 ttatccgatc aaaatcagca ccagctccaa aggtacgctc aaaatccccc attttctgcc
      301 cccattaaat ttaataaaaa aacagattta aaatatccaa aagacactct tatttaccat
      361 aacatccctt gttcgcaccg ccgcagacag cctcagcacc gttctgcgcc atgaaccgca
      421 aaagagcacc tcttaccacg taaaaacgcc gataaatgcc ccccgtaagt tcttacggta
      481 tgcatagtta tgcacggaaa tgaactgaca ctctgttcaa tggattttca tgctgtaagc
      541 agtattttag tcttctatgc cccctcgaaa cacacctgtt cttgtgtaga tcttttcgac
      601 ccaagatggt cttttatccg agttcatgca gccgtacagg aacacacctg ttttgggttt
      661 atagctcccc ccctcctgtg gctggttatc tacaaatgaa taatcaatct tttcaccttt
      721 gactgaagca cgccccccaa catgaactaa agaccagtgc tcatgcatca catggctttc
      781 aatcaatcca aatgaagaaa aaccccatga atcaaaaaag accttgagtc cgtcagacgc
      841 accaacagga gtaatgattg caaattcaac ctgctcacca gtaccttcaa ggtaagaagg
      901 tttctcgacg ttaattacag atgccccctt cacctgataa cctttacagg taagatataa
      961 gtccctcccg gctgacggtt ttgtatatgt aacgttgtcg ttattctccg cagcagcgac
     1021 tgtaaatgac atagccaaaa ccaccgagac tgagcaagcc cagaaacatt tcataacgca
     1081 tcccttttca ttgattaact acattccaag ctcaaaacct ttctgccgct gcgatcgttc
     1141 cagctccagc gctttctggt gctgcgccgc gcgctcctgc tcccggtgcg cctcgatgcc
     1201 attcagcctt gcgacaatcg gcgcagctga tcgctcaaac tctgcacctg cctgctcaag
     1261 cccgtgacgc gctcgctcag cgccgcgttc tcccgttgca taagcccaga catcgtccgc
     1321 cattccgcga aggcgttctc ccactcgtcc agccttttcg agtagtcctg ctgtagctgc
     1381 tctaatgcgc tcagcaactg tttttccagt tccgtcatgt gctatttccc cgccagtatc
     1441 atccagctcg aatcctctcc gaatcttccc gcttccgggt tcaccctcac gcagcggcgt
     1501 ctctcctccc cgcaggtcgt gagctggacg ccgttgttct tctctgaaag catggcctgc
     1561 gtgctcttct gttcctggat ggtcgtgtag ttgtcgagta tctgttgccc ctgccaccac
     1621 agaatgcccg cgctcgaggc gatcagtagc gcggagacca ggactatggt cagccacgtc
     1681 tggctgatca tacgcagcat ccctttcgtg cgttggctca tggctgagga cagcttccgg
     1741 tcgtggtcga ggatggcggc gctgattctc ttctcgcttt cgctcagttc cgctctgaca
     1801 gacttctcgt gctcgctgaa tgcggctttc agcatctcgc cggtagtctg ctgctgcgct
     1861 ttcgatttct gctctaagtc cttcgccagc gttaaaagac tgttcataga tggctccctt
     1921 cagtcggatg tttcgccccc cgtcagggtc ggcaatgctg atgctgcttt tcgtggtgcg
     1981 caccacctca aaacccgcac tttccagcgc ctcagtgacg tcctgacggg ttttcagctc
     2041 cccggatgag gcaagggaaa gtaggccgcg cgtaatcgcc tgggcggctt cctgcttcgc
     2101 ttccggcagc gcggacggtg taaccagcgc ccgccggttt tccggcgcgt tcgggtcgtg
     2161 cagccccagt ctgccgttca ctatggtctg ccaggcatca atgcgcggac ggtcggcgcg
     2221 gtcgtaatac ggctggagac gtctgccggt cagcagctcc gtgttcggga tcaggaagtt
     2281 cagctccagc cgccctttgt cccggtgctc aacccacagt acgctgtact ggtctttatc
     2341 gagtccgggc atcagaaccc gctcaaagct cgccatcagc ttttcacgct ggccgggcgg
     2401 caaatcctgt tcggcaaaag acagcacgcc ggaggtgtat ttcttggcgt aaggcgaggc
     2461 gtcaataagc tcccgcactt cctccggctt accctgcaga acgctggcgc cgtcgcgctg
     2521 ccggtctttc cccagcagat aatccaccgg accgccgcca ccgccgcggc ctctgggatg
     2581 aaacttaacg atcatcgtct gccccctttt ccagcacggc gtgccgcagc cgctcgagtc
     2641 cggcatcaat ggccatcagc acggcgacaa cctgcacgcg atcgtgccca gtaccgccac
     2701 cggcgttaac ctgccgggca atctggttga ggttgttacc catgccggca agctgacgaa
     2761 gcagcgccgg cgagatggat ggaagtttgc cagcacgcga gggcttttcg tccaggcata
     2821 tctggcgcat ccaggccgcg agttgtttac cctcacagcg ctccagaagt cggcggtgct
     2881 cgtcttctgt cacccacata gtgagcattt tgttgcgctt ttctgccaaa ccatcctccg
     2941 gataacaccg gttcgggcgg gaaatttttt cctgtccgga gcggtgttgg gcaagcccgc
     3001 agggcgcggc agtacttttc agcgggtttc ggggcgcagc cctgaaccag tcacgtagcg
     3061 ctagcggagt gtatactggc ttaacatggt aaatcggagt ggggattcag gaaagtgctt
     3121 catgtggcag ggagaaaatg ctgctgtggg gcgtaagtgc gaaatgcaga tcccggtgaa
     3181 atgacgcctc ctcgctcact cggtcgctgc gctcctgccg tgagactgcg gcgggtgttg
     3241 ccagcttacg aatggctgga taaagagact aagcggaaat caatcagaaa gggcggaaaa
     3301 aggatgcggc gttgccgttt ttccataggc tccgcccccc tgacaagcat cacgaaatct
     3361 gacgctcaaa tcagtggtgg cgaaacccga caggactata aagatcccag gcgtttcccc
     3421 ctggtagctc cctcgtgcgc tctcctgttc ctgcctttcg gtttaccggt gtcattccgc
     3481 tgttatggcc gcgtttatct aattccacgc ctgacactca gttccgggta ggcagttcgc
     3541 tccaagctgg actgtatgca cgaacccccc gttcagtccg accgctgcgc cttatccggt
     3601 aactatcgac ttgagtccaa cccggaaaga cacgacaaaa cgccactggc agcagccact
     3661 ggtaactgat ttagaggagt tagtcttgaa gttatgcgcc ggttaaggct aaactgaaag
     3721 gacaagtttt ggtgactgtg ctcctccaag ccagttacct cggttcaaag agttgctgct
     3781 ctgagaacct tcgaaaaaac cgccttgctg ggcggttttt tcgtttacag tgctaagaga
     3841 ttacgattct ccatgaatga tctcaagaag atccgtttaa aaaagcgggt tttatggggg
     3901 gataaagttc gtctagccca gtcactttgg attacagcta ggtttcgtaa gccatgcaag
     3961 aatgcctgta actaacaaaa taggccctgc aacgtacgta acatagactc caacatac
//
