LOCUS       NZ_CP096901             3495 bp    DNA     circular CON 05-JUN-2024
DEFINITION  Acinetobacter baumannii strain Mu1956 plasmid unnamed7, complete
            sequence.
ACCESSION   NZ_CP096901
VERSION     NZ_CP096901.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27988045
            Assembly: GCF_030168285.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 3495)
  AUTHORS   Choby,J.E. and Weiss,D.S.
  TITLE     Heteroresistance via beta-lactamase gene amplification threatens the
            beta-lactam pipeline
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3495)
  AUTHORS   Choby,J.E. and Weiss,D.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-APR-2022) Division of Infectious Disease, Emory
            University School of Medicine, 954 Gatewood Road Room 2052, Atlanta,
            GA 30329, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Oxford Nanopore; Illumina NextSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030168285.1-RS_2024_06_05
            Annotation Date                   :: 06/05/2024 05:01:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,207
            CDSs (total)                      :: 4,111
            Genes (coding)                    :: 4,017
            CDSs (with protein)               :: 4,017
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 94
            CDSs (without protein)            :: 94
            Pseudo Genes (ambiguous residues) :: 0 of 94
            Pseudo Genes (frameshifted)       :: 31 of 94
            Pseudo Genes (incomplete)         :: 59 of 94
            Pseudo Genes (internal stop)      :: 16 of 94
            Pseudo Genes (multiple problems)  :: 11 of 94
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP096901.1.
            Bacteria and source DNA available from David S Weiss, Emory
            University, dweiss8@emory.edu.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3495
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="Mu1956"
                     /isolation_source="respiratory"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="unnamed7"
                     /geo_loc_name="USA:Georgia,Atlanta"
                     /lat_lon="33.7911 N 84.3233 W"
                     /collection_date="2012/2015"
                     /collected_by="Georgia Emerging Infections Program"
     gene            complement(join(3461..3495,1..922))
                     /locus_tag="M1783_RS21070"
                     /old_locus_tag="M1783_21060"
                     /pseudo=""
     CDS             complement(join(3461..3495,1..922))
                     /locus_tag="M1783_RS21070"
                     /old_locus_tag="M1783_21060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004637187.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS5-like element ISAba13 family transposase"
                     /name="IS5-like element ISAba13 family transposase"
     gene            complement(<978..1568)
                     /locus_tag="M1783_RS21075"
                     /old_locus_tag="M1783_21065"
                     /pseudo=""
     CDS             complement(<978..1568)
                     /locus_tag="M1783_RS21075"
                     /old_locus_tag="M1783_21065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002060535.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /name="glycosyl transferase"
     gene            complement(1634..2422)
                     /locus_tag="M1783_RS21080"
                     /old_locus_tag="M1783_21070"
     CDS             complement(1634..2422)
                     /locus_tag="M1783_RS21080"
                     /old_locus_tag="M1783_21070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000987455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="WP_000987455.1"
                     /translation="MMSNNLPTIHALWIGEKLGAISRCCLHSFVMRGHEVHLHTYADII
                     DVPNGVKLVDANKIISKDQIIKHKETGSYALFSDIFRYELMRKVDGVYVDCDVYCLKPI
                     SIPEHGYLLGFEDDEWINGAILRIPKESDLLKELLKAAYDPFFVPPWFSMSKQFKLKTK
                     KIMGIGKSLADMPWGVIGPKAITYYVKQLDLKNNIQPIDIFYPVHYQCISQLCDPALTI
                     DDITTSRTTCIHLYNEMLKGIKLEELDDRTIMSRLLKCDI"
                     /name="glycosyltransferase"
     gene            2641..3456
                     /locus_tag="M1783_RS21085"
                     /old_locus_tag="M1783_21075"
     CDS             2641..3456
                     /locus_tag="M1783_RS21085"
                     /old_locus_tag="M1783_21075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000721907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="WP_000721911.1"
                     /translation="MKKILILCVSLQGSNERQEKIKQQHQNLQSTIHDIQIDFQFFDAI
                     YGKKLPNEYLIFLNLSRQFAGLCDHELGPSELGCWLSHMIIWQRLAQGDYAAYDRIIII
                     EDDVIFQTEHIQQKLHSLLETNPAFAFLGGHSEPSRRRIRGYVSNDELYFNMTGPKDLY
                     TATYAYSLTRETAQDFVNKQIKKLTYIDDWKYLLEGDISTPFYYCFEHDDEMQSHIASD
                     RKIYMKKPNRFKKNFNKMKNDLISRVISLFIFKKIIRLAYFLQSAQTQK"
                     /name="glycosyltransferase family 25 protein"
ORIGIN
        1 ctcgggtatg tggtctgcct aagtccgtaa atttatttaa tactgccata cgtgcatgaa
       61 tctcattgac ttggctttga aaatttctcg cactgagttt atcccctaat aatttgatgc
      121 aatgcatctt ggtttcaacc aaacttcgcc gatgatagcc tgaccatttc ttccaaatag
      181 ttcttcctaa acgtttaact gttcgaagca actcattgcg ttctagcgag cccatctttt
      241 tatctttcca tggcttcgca ttttttcttg gtggaatcac tgcatgtgct tgccgatccg
      301 caatgacctg tcggcactgt ttggtatcat aagctccatc ggtatagacg gagtcaactc
      361 tctcatcttg tggaatctga tcgagtaaat caccaagtac ctgtgaatca ctcacattgt
      421 tggttgtgag ctgaacagcg cgtatttgta aggttttagc atctatacca atatgtaatt
      481 tacgccattg gcgacgatat tcaggctgat gttttttacg cttccattca ccctcaccta
      541 agaatttcag acctgtagag tcaacgatta gatatagtcc atcacaactt ttttgatagc
      601 taatcacaat atcaatatgc tgttgtcgtc tacaaattgt agtgtagtct ggcgctatcc
      661 aatttaaccc acaaagatgg atgagacttt gaacaaagcc agtgaccatg cgtaaagata
      721 atcgaaagag agatttaatc attaggcagc attggatagc tgcgtcggag taagtttgat
      781 ttcgtccttg tttgcctttt gatggggcat accattgcgt agcaggatca aaccaaatgg
      841 caatatttcc acgattaatg agagctcggt tatatgaaga ccaattggtt gtgcgataaa
      901 tttttggtgt cgacttattc atttgaaaat tatattgtgg aataagcctt tagagatagg
      961 tttgtgcaac aaagcccatc aaaattgaaa tcgatatcaa ttggattagg cacatattct
     1021 atgggaacac ttttttctaa ttgatataaa tctatagctt tctgattaag aaaatatccc
     1081 tgcgaaataa acctcacacg attattaata taccaatcat gtactagatc atatattttc
     1141 tgattataat aattagtttc aggaaataat ttaactgtat taatttcctc ccactcatag
     1201 gtaggtcttg ggtcttgtat ccataaaatt aattttttag ttttatctaa ttcattttcc
     1261 aatacataat taaatgttaa ttcaacactt aaataaatat cataattttt tttcctaagc
     1321 cagcgacgtg caaaccattt tctacgcgga agtcgatata atttaacgtc atctactaaa
     1381 tattcttcag caaagagttt tttactgcct ttacctagta acacatcaat ttggatatcc
     1441 gcatttggaa tatatttagc tatatgattt ctcgctaaaa acccataacc accaaaagca
     1501 gtattagcac caccaaaaaa ctcatcaata attaaaccaa ctctaattgg cctattatac
     1561 ccactcatta aacaccctca atacattaat caaatgtata attcaaactt gctttaatta
     1621 tcttaataaa cgattaaata tcacatttta aaagacgtga cataatagta cgatcatcta
     1681 attcctctag ttttatacct tttaacatct cgttatataa atgaatacaa gtagtacgag
     1741 aagtagtaat atcatctata gtgagggcag gatcacaaag ctgacttata cattgatagt
     1801 gaacaggata aaaaatatca atgggttgaa tattattttt taagtccaat tgcttaacat
     1861 aataagtaat ggctttagga ccaataactc cccatggcat atctgctaaa ctttttccaa
     1921 ttcccattat tttttttgtt tttaatttaa attgtttact catagagaac catggtggta
     1981 caaaaaatgg atcatatgcc gcttttaata gttctttaag taaatcgctt tctttaggaa
     2041 tacgcaaaat cgctccgtta atccactcat catcctcaaa gcctaataag tatccatgct
     2101 ctggtattga aataggtttt aaacaataca catcacagtc aacatagaca ccatcaactt
     2161 tacgcattaa ttcataacgg aaaatgtctg aaaataatgc ataacttcct gtttccttat
     2221 gctttataat ttggtcttta gaaataattt tatttgcatc taccaacttt actccatttg
     2281 gaacatctat aatatctgca tatgtatgta aatggacttc atgccccctc attacaaaag
     2341 agtgtaagca acatctagaa attgctccaa gtttttctcc aatccacaaa gcatgaatgg
     2401 taggtaaatt atttgacatc atttaaatat aacctttata aattcttgtt gctcatagaa
     2461 ttattgttaa ccctcacatc atctgattgc cctcaccaaa gatacaagca accacctata
     2521 ttactttttt aacttctaaa ttattttaga gctaagtcag aggaatatgt agaaggacta
     2581 tcaacaacaa atacagaagt atagaatatc taaattgtat tgtatcaagt tagttgaaac
     2641 atgaaaaaga ttcttatcct atgtgtctct ttgcaaggaa gtaatgaacg ccaagaaaaa
     2701 atcaaacagc aacaccaaaa tttgcaatca accattcatg atatacaaat tgattttcaa
     2761 tttttcgatg ctatttatgg gaaaaaactt cctaatgaat atttaatttt tttaaattta
     2821 agtcgtcagt ttgctggatt atgtgatcac gaattagggc caagtgaact aggctgctgg
     2881 ttaagtcata tgattatttg gcaacgtcta gctcaaggtg attatgcagc atatgatcgc
     2941 ataataatta ttgaagatga tgtaattttt caaaccgaac atatacagca gaaattacat
     3001 tctttattag aaaccaatcc cgcattcgca ttcttaggag gacactctga accatctaga
     3061 cgacgaataa gaggatacgt aagtaatgat gaactttact tcaatatgac tggccctaaa
     3121 gatctatata cagccacata tgcttactct ttaacccgag aaactgctca agattttgtc
     3181 aataaacaaa taaagaaatt gacttatatt gatgactgga aatatttatt agaaggagat
     3241 atttccactc ctttttatta ttgctttgag catgacgacg agatgcaaag ccatattgca
     3301 tctgatagaa aaatatacat gaaaaagcca aatcgcttta aaaagaactt taacaaaatg
     3361 aaaaatgatt taatttctcg ggttatttct ctttttattt tcaaaaaaat tattcgatta
     3421 gcatactttc tccaatccgc ccaaacacaa aaatgagtag ctacaggtaa ttaaatgtta
     3481 ataactcgcg gtctt
//
