LOCUS       NZ_CP096198             3360 bp    DNA     circular CON 15-AUG-2023
DEFINITION  Enterobacter roggenkampii isolate C3-17 plasmid unnamed11, complete
            sequence.
ACCESSION   NZ_CP096198
VERSION     NZ_CP096198.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27117675
            Assembly: GCF_023195715.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 3360)
  AUTHORS   Ota,Y. and Saito,R.
  TITLE     Enterobacter roggenkampii from sink in nursing home
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3360)
  AUTHORS   Ota,Y. and Saito,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2022) Molecular Microbiology, Tokyo Medical and
            Dental University, 1-5-45, Yushima, Bunkyo-ku 113-8510, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAR-2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 448.7x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/15/2023 06:31:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,939
            CDSs (total)                      :: 4,824
            Genes (coding)                    :: 4,722
            CDSs (with protein)               :: 4,722
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 39 of 102
            Pseudo Genes (incomplete)         :: 53 of 102
            Pseudo Genes (internal stop)      :: 28 of 102
            Pseudo Genes (multiple problems)  :: 17 of 102
            Pseudo Genes (short protein)      :: 1 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP096198.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3360
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /isolate="C3-17"
                     /isolation_source="sink"
                     /db_xref="taxon:1812935"
                     /plasmid="unnamed11"
                     /geo_loc_name="Japan: Tokyo"
                     /lat_lon="35.70153025 N 139.76415553 E"
                     /collection_date="2021-12"
                     /collected_by="Tokyo Medical and Dental University"
     gene            join(3175..3360,1..345)
                     /locus_tag="M0769_RS24665"
                     /old_locus_tag="M0769_24665"
     CDS             join(3175..3360,1..345)
                     /locus_tag="M0769_RS24665"
                     /old_locus_tag="M0769_24665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012634455.1"
                     /translation="MASTEEKLLTLLLSAEHLKEAAKEQQKAVADSLAVARETLKGYRE
                     ISDSVAQQVRDEVRQEVQKMDVAGLIGERISADFQRLEKSVGNMKINADALDKEISIIR
                     SNIIAEYNTLRGYSWKWFAGVAVAFVVLIFATSWFVKTELQDNYNASAAVYQKVADLEK
                     LLTTEQKPEKKKN"
                     /name="hypothetical protein"
     gene            complement(1684..2070)
                     /locus_tag="M0769_RS24670"
                     /old_locus_tag="M0769_24670"
     CDS             complement(1684..2070)
                     /locus_tag="M0769_RS24670"
                     /old_locus_tag="M0769_24670"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045282373.1"
                     /translation="MRISNVEWLKKRIAFIRKLGEKTARQRQIIDLLDDEASLSETERR
                     LLHVLATAEKNALQERDAAQKKAVQARISGQKNRRERNHRLFLAAGLMIDAGLVDTKTG
                     ELNFDHEKLLTALKRVRYDLETSA"
                     /name="hypothetical protein"
     gene            2237..3172
                     /locus_tag="M0769_RS24675"
                     /old_locus_tag="M0769_24675"
     CDS             2237..3172
                     /locus_tag="M0769_RS24675"
                     /old_locus_tag="M0769_24675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_045626452.1"
                     /translation="MATYHLSVKFGGKGKALAHASYITREDKFSQRQDLEHTEHGNMPE
                     WARDEPAHFWQAADAFERANGSTYREIEIALPRELNEAQRLALVRDFVKQETGDKHAWT
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERSPEQYFRRYNAKFPARGGARKDSGHNL
                     TPTEQKQALKALRERWERTHNAHMKRYGFEQGFIDSRSLKTQGIDRKPEQHLGFEAAGR
                     LDDSQRQDIKDSRTFSVVDVPEQAKHIDHSDRSWMNASGIEVNRKELVRSLTHDISQQY
                     GREMAARVTKQGNVEIERVKSLSRGFSISR"
                     /name="MobA/MobL family protein"
     Typing          2238..3169
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.177"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cagaaaatgg atgttgcggg gctgattggc gagcgtatca gcgctgattt tcagcgtctg
       61 gaaaaatccg tcgggaacat gaaaatcaat gcggacgcgc tggacaagga aatttccatt
      121 atccgcagta acatcatcgc ggagtacaac acgctgcggg gttacagctg gaagtggttt
      181 gctggggttg cggttgcctt tgtcgtactg atatttgcca caagctggtt tgtgaaaacg
      241 gaactacagg acaattacaa cgcgtctgct gccgtctatc agaaagtggc agaccttgaa
      301 aagctgctga caacggaaca gaaaccggaa aagaaaaaga actgacgcgc tgcgcttgtc
      361 caacgcctca cgttcgcaca ataaattgcg cacccgttca ccgttttcag ccgagtttgg
      421 ggcgtctttt gagacttccg gcctgaattc aggccggaag ttctcgccag tcagtcaggt
      481 gcatggttat gcatggggct gaaaatcacg gtatgcgatt ctgagcggtt ttcggtgaga
      541 agccgggggt ttttatggct caggacttaa aaccgccctg agagcctctg aggcggtgca
      601 cgcaacggat gttatggtaa atccggtggc tttgacgtgc ctgccgttgt gtaccgtcgt
      661 gagtgaaaat aattatattg ttcgaagaac agcgcttttt ggccggagaa aagcagttct
      721 gcaaacgatg gtatatcgat atgagttctt ttggcattaa tccaggcaag acgccgggca
      781 ataagcgtaa tattccggat gttacttatt tccatttctg tcaacagcat ccccccccac
      841 gccggagaat aaaaaagccg cctgttccat cggcaagccc tacatcaagg gaaactacgt
      901 cttacgattc gttttgaacc gggacgcttt gttgctgcga atcactaacc agataatcca
      961 cgttttgtga gtgggtttag gttaaggctt caatagaaca ataatagcgt taagtgatta
     1021 gggcaacctg tgattgctaa aatgatgaag tcttcacatc atttcggtga aggcgatatg
     1081 tgttacacca caacccggat ttgagagtcg caaacccata ttagggcaaa gaaagcctaa
     1141 tgcccccgtg gtgggtacac cagaaaacgg ggagcgaagc gaccagcatc aggccgttcg
     1201 tatgctgctt cgattttgtg ggtgttgcgc cagaccttgg caatcacgct tcaccgcaac
     1261 cgctgccttc actctcactt tatcaggtac gttattggtt aacgtgagac cgggtagagc
     1321 cagcttcttt cccgagctgg tcaggttccc accgcttgcc tgtttatcct gccggagtcc
     1381 ggggcgtaga cctgagagtc aaggtgcaga tatgggttta atgtcgttga atggtattaa
     1441 gctggtagtg acattcctag ccagccctgc taggatttga ttgtgacgtc tgatcctggc
     1501 aggtatctgc aagaattaga gtactcaagc cccgtgattc tgtcacgggg cttttgtaca
     1561 tctggagcaa gaaaattcat gctcctatcc gaaaatccct accgctcgcc gcagccgaac
     1621 gaccgagcga cgcgagtcag tgagcgagga agcggcattt ctccggcctt gcagaatgca
     1681 cgttcacgcc gatgtttcca gatcgtagcg tacccgtttc agcgcagtca gtaatttttc
     1741 gtggtcaaaa ttcaactcac ccgtttttgt atcaaccagt cccgcgtcaa tcatcagacc
     1801 agccgccaga aacagtctgt gattgcgttc cctgcggttt ttctgccctg aaatccgcgc
     1861 ctgaaccgcc tttttctgtg cggcatcccg ttcctgcaac gcgttttttt cagcggttgc
     1921 cagaacgtgg agcagtcgtc tttcagtctc actgagcgaa gcttcatcat ccagcagatc
     1981 gataatctgc cgttgccgtg ccgttttttc tcccagcttt ctgatgaagg ctatgcgctt
     2041 tttaagccat tcgacgttac tgatccgcat cgtttaactt ccccatcccg atatttccga
     2101 cggggaaagt atataacttg cggtcagaag tcgcatgact tatctttact cataattctt
     2161 taaattagag taaagcgcac ttatatgttt ctccctgcgg gcagaaacag tgcgccctgc
     2221 cgggggctga cacaacatgg caacgtatca tctcagcgtg aaatttggcg gcaagggtaa
     2281 agcccttgct catgccagtt acattacgcg ggaagataag ttcagccagc gccaggatct
     2341 cgagcacacc gaacacggca atatgccgga atgggcgaga gatgaacccg cccatttctg
     2401 gcaggctgcg gatgcgttcg aacgtgccaa cggttcaacg tacagggaaa ttgagatcgc
     2461 tctaccccgc gagctgaatg aagcgcagcg gctggcgctt gtccgggatt ttgtgaagca
     2521 ggaaacgggc gacaaacatg catggacgtt tgcgatccac aatccgaaag ccagcattga
     2581 cggcggcgaa cagccgcacg cccatatcat gatgagccag cgcgtcaatg acggtattga
     2641 gcgcagtccc gaacagtatt tcaggcgcta taacgccaaa tttccggcgc gtggcggcgc
     2701 gcgcaaggac tcagggcata atttaacccc tacagaacaa aaacaggcac tgaaagccct
     2761 gcgggagcgc tgggagcgta cgcacaacgc gcatatgaaa cgatatggct ttgagcaggg
     2821 ttttattgat agccggtcac tgaaaacaca gggtatcgac cggaaaccgg aacagcatct
     2881 cggttttgaa gcagccggac gactggacga cagccagagg caggatatta aagacagccg
     2941 gacgttttca gtcgtggatg tgcctgaaca ggcgaaacat atcgaccaca gcgaccgtag
     3001 ctggatgaat gccagcggta tcgaggtaaa ccggaaggaa ctggtcagat ctctgacgca
     3061 tgatatctcg cagcagtacg ggcgggagat ggctgcacgg gtcacaaaac agggaaatgt
     3121 tgaaatagag cgcgtgaaat ccctgtcacg cggattttcc ataagcaggt aactatggcg
     3181 agcaccgaag aaaaacttct cacactcctg ctgtcggcgg agcatctgaa agaggccgca
     3241 aaagagcagc agaaagccgt ggcggattcg ctggcggtgg caagggaaac cctgaaaggc
     3301 taccgggaaa tatcggacag tgtggcacag caggtaaggg atgaagtccg gcaggaagtg
//
