LOCUS       NZ_CP096196             4068 bp    DNA     circular CON 15-AUG-2023
DEFINITION  Enterobacter roggenkampii isolate C3-17 plasmid unnamed9, complete
            sequence.
ACCESSION   NZ_CP096196
VERSION     NZ_CP096196.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27117675
            Assembly: GCF_023195715.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 4068)
  AUTHORS   Ota,Y. and Saito,R.
  TITLE     Enterobacter roggenkampii from sink in nursing home
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4068)
  AUTHORS   Ota,Y. and Saito,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2022) Molecular Microbiology, Tokyo Medical and
            Dental University, 1-5-45, Yushima, Bunkyo-ku 113-8510, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAR-2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 448.7x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/15/2023 06:31:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,939
            CDSs (total)                      :: 4,824
            Genes (coding)                    :: 4,722
            CDSs (with protein)               :: 4,722
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 39 of 102
            Pseudo Genes (incomplete)         :: 53 of 102
            Pseudo Genes (internal stop)      :: 28 of 102
            Pseudo Genes (multiple problems)  :: 17 of 102
            Pseudo Genes (short protein)      :: 1 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP096196.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4068
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /isolate="C3-17"
                     /isolation_source="sink"
                     /db_xref="taxon:1812935"
                     /plasmid="unnamed9"
                     /geo_loc_name="Japan: Tokyo"
                     /lat_lon="35.70153025 N 139.76415553 E"
                     /collection_date="2021-12"
                     /collected_by="Tokyo Medical and Dental University"
     gene            complement(582..731)
                     /locus_tag="M0769_RS24630"
                     /old_locus_tag="M0769_24630"
     CDS             complement(582..731)
                     /locus_tag="M0769_RS24630"
                     /old_locus_tag="M0769_24630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001138880.1"
                     /translation="MPSEYDEQLDSTDTQLPGEYDLFDLMAQVTEENLHAPVDFGSPVG
                     REAL"
                     /name="hypothetical protein"
     gene            1817..2416
                     /locus_tag="M0769_RS24635"
                     /old_locus_tag="M0769_24635"
     CDS             1817..2416
                     /locus_tag="M0769_RS24635"
                     /old_locus_tag="M0769_24635"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_049002646.1"
                     /translation="MKLINSFALSCFFFSISALAAQELVINNSALHIIFADGTEANVSS
                     CSDFISLNQAGMKIKELPDLSDPDYQQAHMELSKCLMHSWAIQNGYTQKTSSAITLDEV
                     VKHFPATADLSPASGYKTMLQTIPDLKPKDDRFVSHTKEEGYVINDAWTFKNSSGQEAD
                     FVMLVGYATGGTMAVARLWRIDSKTTTPWGVTEIKP"
                     /name="hypothetical protein"
     gene            complement(2443..3225)
                     /locus_tag="M0769_RS24640"
                     /old_locus_tag="M0769_24640"
     CDS             complement(2443..3225)
                     /locus_tag="M0769_RS24640"
                     /old_locus_tag="M0769_24640"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_224753151.1"
                     /translation="MSTELNSGTVGGFGHMGPNDPYNDGHSGSGSSGGSFNGGGNGGHD
                     NSSGSSYTASFGLITGRHPITVPGTKNINSVDLSAVINNIIHHEGARNNMYLDTANNVT
                     VGIGRMLPNSQAGYNLGFTKTHHIPRGHGDSEDVEISASHGDIDSAFNATKEKRASNVH
                     LSDQSMVADCVNQLDKDRTTLRNMYTDFDHFPQPAKTALHDMLYNLGEGKLHSEFPNFN
                     AAVNRKDWTRAATESHRTGIGDSRNKDTHDQFIAAGNK"
                     /name="hypothetical protein"
     gene            3443..3883
                     /locus_tag="M0769_RS24645"
                     /old_locus_tag="M0769_24645"
     CDS             3443..3883
                     /locus_tag="M0769_RS24645"
                     /old_locus_tag="M0769_24645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011161230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005119689.1"
                     /translation="MAWHTVQETLKLTGKSRSQLYRDMAKGLVSYRTGKNDRREFETSE
                     LIRAYGELRTSETPKRHKEGHSKSVVSQAENAQLDVIQQKLDALQQTVTLMLEDKMARE
                     AENRLRNEEREQLQAEISRLADALAQEKKRGFWSRLFRSGSE"
                     /name="hypothetical protein"
     Typing          complement(767..940)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.429"
                     /coverage="100.0"
                     /evalue="1.19e-84"
     Typing          864..1469
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.593"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 caccattcag ccggggtaag tcctgtttcc ggcgttcttc ccatccgaaa acggtgaacg
       61 gggacgcaat ttattgcgtg gccgtgaagc gttgccggcg cagccggaaa acccgctgtc
      121 agcacgttca ggaagggggt gatgtacaaa tggcacagag gatgaaagtg acgtatgagc
      181 tgaaggaatg atgtaaaagt gatgtataag tgatgtaaaa gtgatgaaaa agtgttgtaa
      241 aagtgatgta tgaactgaag gagcgatgta attctgtagt caggaagaat aacccgttca
      301 tgcaggcatg aacgatacag tgaggaacgc tttttttgtc acgatctccc cttaacctgc
      361 gtaaatcacc cgccatggtt gattattttt caacctcaaa atggtcatac acctaacgca
      421 gccgcgattt tcatcgcaac tgcatgaatt aaaagaaaaa aaaggaatat ttcgttttca
      481 cgagtaatac ccgggtatta aaaatccact gtaattacat gaaaataaag aaataaaagg
      541 taataccggc gtattaccac gtacgcgggc aagcgaaaaa gctataacgc ttcccggccg
      601 acaggcgacc caaaatccac aggtgcatgc aggttctctt cagtaacctg cgccattaaa
      661 tcaaaaaggt catattcgcc gggaagctgc gtatcagtcg aatccagttg ttcatcatat
      721 tcagatggca tggggtgata tccagtagct gagaggttgt tagcgggttt cggggcgcag
      781 ccctgaacca gtcatgtagc gctagcggag tgtatactgg cttactatgt tgccacgatt
      841 gcgaaaatca gtgaagtgct tcatgtggca ggagaaaaaa ggcagcaccg gcgcgtcagc
      901 agaatatgcg atacaggaga tattccgctt cctcgctcac tgactcgcta cgctcggtcg
      961 ttcggctgcg gcgagcggta ccggcttacg gacggggacg gaaatttcct ggaagatacc
     1021 aggaagacac ttagcaaaga agagataagg ccacggcgaa gccgtttttc cataggctcc
     1081 gcccccctga caagcatcgc aaaatctgac gctcaaatca gtggtggcga aacccgacag
     1141 gactataaag atcccaggcg tttccccctg gtagctccct cgtgcgctct cctgttcctg
     1201 cctttcggtt taccggtgtc attccgctgt tatggccgcg gtttctcatt ccacgcctga
     1261 cactcagttc cgtgaaggca gttcgctcca agctggactg tatgcacgaa ccccccgttc
     1321 agtccgaccg ctgcgccttg tccggtaact atcaacttga gtccaacccg gaaagacacg
     1381 acaaaacgcc actggcagca gccattagta acaggagtgc acgagaagat agattaagag
     1441 gtcttgaagt agaggcctga ctgcggctac actgaaagaa cagttttggt aatggcggtc
     1501 tcgtgaaccc tgttaccggg ttaagcagtt ccccaactga cttaaccttc gaacaaaccg
     1561 cctccccagg cggttttttc gtttacagag caagagatta cgattcattg aaaaggatct
     1621 caagaagatc ctttgtagat tactatcaat taatcttccg aacatgacac cagtcactgt
     1681 tgattacggt taaaccgctc cgtaacaggt ttccctcgta ttggtgactt gcagcaccaa
     1741 agaagcaaaa aagataaata tatctactta ttgagagatg atatatttat ttccaaaatg
     1801 ctacagatac atcatcatga aactaattaa ctcattcgcc ctgtcatgtt tcttcttttc
     1861 aattagcgcc ctcgccgcac aagagctggt aattaacaat tcagccctac acattatctt
     1921 tgctgacggc acagaggcta atgtatcctc atgcagtgac tttatctctc taaatcaagc
     1981 aggtatgaag attaaggagc taccggatct gtcagaccct gattaccagc aggcgcatat
     2041 ggagctcagc aaatgcctaa tgcattcttg ggctatccag aacggatata cccaaaaaac
     2101 cagttcggca atcacacttg atgaggtagt gaagcacttc cctgcgacag cagacctgag
     2161 cccagcctct ggttataaaa ctatgctgca aacaataccg gacttaaaac cgaaggatga
     2221 ccgctttgtg tcacatacca aagaggaagg gtatgtgatt aatgatgctt ggacatttaa
     2281 gaactcatcc ggccaagagg cagatttcgt gatgttggtg ggctatgcaa ccggaggtac
     2341 aatggctgtt gcccgtctct ggcgaataga ttcaaaaacc accaccccct ggggtgttac
     2401 cgaaataaag ccataaaaaa agccgcatta tgcggctttt tcttatttat tacctgcagc
     2461 aataaactgg tcgtgtgtgt ctttgttacg ggaatcaccg atgccagtgc gatggctttc
     2521 agtcgcagct ctggtccagt ctttacgatt tactgccgca ttgaaattag ggaattcaga
     2581 gtgcaatttc ccttctccca aattatacag catatcatgc aatgcagtct tggctggttg
     2641 cgggaagtgg tcgaagtcag tatacatgtt gcgcagggtg gtacgatcct tgtccagttg
     2701 attcacgcaa tccgcaacca ttgactgatc tgagagatgg acattggatg cccttttctc
     2761 tttggttgcg ttaaacgcgc tatctatatc accatggctt gcgcttattt ctacatcttc
     2821 tgaatctcca tgaccacgcg gaatatggtg tgtcttagta aatcccagat tatagcctgc
     2881 ttgcgaattc gggagcatgc gaccaatccc cactgttaca ttgttcgcag tatctaggta
     2941 catgttattg cgtgcacctt catgatgtat aatgttatta atgacagcag aaagatcgac
     3001 agaattaata ttcttcgtac ctgggacagt tatcgggtgt cggccagtga tgagaccaaa
     3061 ggatgcagta taagatgaac cactactatt atcatggcca ccattaccac caccgttaaa
     3121 actacctccc gaacttccag agccgctatg accatcattg taggggtcat ttggtcccat
     3181 gtgaccaaaa ccaccgacag taccgctatt taactctgta ctcataaaat tatcctcttt
     3241 gacttttaaa aacagcaaaa actgtattta taacaatgtg tttatataca gtattcgaaa
     3301 tgctacgccc gtcaaaacca caccgtcaac aggttttttg tgtatttttc acgcctcacg
     3361 ggcagcctca gaccttttgt gttaaaacag taatatgttc tgctgttaca atacggtaca
     3421 cacaggagac actgtcactt ttatggcatg gcacacagtt caagagacac tgaaattaac
     3481 aggaaagtcg cgctcgcaat tatatcgtga catggctaaa ggccttgtca gctatcgcac
     3541 aggaaaaaat gatcgccggg agttcgagac cagtgaactg attcgggcct atggcgagct
     3601 gcgcacttct gagacaccaa aaaggcacaa ggagggacac tccaaatctg tcgttagcca
     3661 ggcggaaaat gctcagctag acgtcattca gcagaaactg gacgctctgc agcagactgt
     3721 taccctaatg cttgaagaca agatggcgcg ggaagcagaa aaccgcctgc gaaatgagga
     3781 gagggaacaa ctacaggccg aaattagccg tctggctgac gcgctggcac aggaaaaaaa
     3841 gcggggattc tggtcgcggc tgtttcgctc cggttcagag taacagtgca ggtgactctg
     3901 atttaccata acatctgtta tcagcaccgc ctgagaggcc ctcagggcgt ttctgacggg
     3961 aaaccggtaa aacaggcaac aaaccacccg aaaacccgcc agaaacgcgc aggctctgtt
     4021 tttacggcat gcatgagtat gcgcacaagt gcatagcgcg gaaattca
//
