LOCUS       NZ_CP096194             4854 bp    DNA     circular CON 15-AUG-2023
DEFINITION  Enterobacter roggenkampii isolate C3-17 plasmid unnamed7, complete
            sequence.
ACCESSION   NZ_CP096194
VERSION     NZ_CP096194.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27117675
            Assembly: GCF_023195715.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 4854)
  AUTHORS   Ota,Y. and Saito,R.
  TITLE     Enterobacter roggenkampii from sink in nursing home
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4854)
  AUTHORS   Ota,Y. and Saito,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2022) Molecular Microbiology, Tokyo Medical and
            Dental University, 1-5-45, Yushima, Bunkyo-ku 113-8510, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAR-2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 448.7x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/15/2023 06:31:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,939
            CDSs (total)                      :: 4,824
            Genes (coding)                    :: 4,722
            CDSs (with protein)               :: 4,722
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 39 of 102
            Pseudo Genes (incomplete)         :: 53 of 102
            Pseudo Genes (internal stop)      :: 28 of 102
            Pseudo Genes (multiple problems)  :: 17 of 102
            Pseudo Genes (short protein)      :: 1 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP096194.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4854
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /isolate="C3-17"
                     /isolation_source="sink"
                     /db_xref="taxon:1812935"
                     /plasmid="unnamed7"
                     /geo_loc_name="Japan: Tokyo"
                     /lat_lon="35.70153025 N 139.76415553 E"
                     /collection_date="2021-12"
                     /collected_by="Tokyo Medical and Dental University"
     gene            complement(join(4780..4854,1..510))
                     /locus_tag="M0769_RS24575"
                     /old_locus_tag="M0769_24575"
     CDS             complement(join(4780..4854,1..510))
                     /locus_tag="M0769_RS24575"
                     /old_locus_tag="M0769_24575"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_248352140.1"
                     /translation="MYENYTRALQVLDVLERVCEKLQLNQRVKLKSALSRKGLLAEPSV
                     AYLMDSLRPKEAKRFCVAMSTIESHMSRLNTADRIFVSTEAPATKGFYMAHLRDHPTII
                     ELARRMMIGERRFTDVDPQLVDVASNLASSPTWCVRVLIPSIDPRKAAIIISKLSALVF
                     RALERMKGKPAPQQYVAQLQRMSYELQQMRY"
                     /name="hypothetical protein"
     gene            640..1014
                     /locus_tag="M0769_RS24580"
                     /old_locus_tag="M0769_24580"
     CDS             640..1014
                     /locus_tag="M0769_RS24580"
                     /old_locus_tag="M0769_24580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012443152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_248352141.1"
                     /translation="MASHSVTEAAKLAGVTRRTIYRHIKAGKLSASVTGGDNTVIETSE
                     LLRVYGALSQPEPGKVSTGSHENQPEYVTLLLAEMSQLREQISSLTSKVDELQSKLALP
                     APRVREQSVLEWVSARRKLK"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1318..1794)
                     /locus_tag="M0769_RS24585"
                     /old_locus_tag="M0769_24585"
     CDS             complement(1318..1794)
                     /locus_tag="M0769_RS24585"
                     /old_locus_tag="M0769_24585"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_248352142.1"
                     /translation="MSAKDEFFRTVESNAKTQKEAEEDFKREVLAFQEDTKKLILEIKE
                     WFAGSPVTASVGTMQVIENTDRFEVSNLTLKNGSKTLTINPEGFAYFGVTGCLKVSIHN
                     PNRAPATSKFSLHWKDGISKISGWVIVYGEGGNTPAQRVQFNQESFFTMIKEFA"
                     /name="hypothetical protein"
     gene            complement(2320..2940)
                     /locus_tag="M0769_RS24590"
                     /old_locus_tag="M0769_24590"
     CDS             complement(2320..2940)
                     /locus_tag="M0769_RS24590"
                     /old_locus_tag="M0769_24590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013716169.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0000150 - DNA strand exchange activity [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="WP_248352143.1"
                     /translation="MRTYAYLRASTAEQDAARASQSLNTFAEEHGLTIAANFIENVSGA
                     SLQRPELFRLLAVAQAGDILLVEQIDRLSRLDADDWERLRGVIQSKGIRIVALDLPTSY
                     LQLQSGNDEFMRSMMNAINGMMLDMLAAIARKDYTDRRRRQAQGIEKAKEMGLYKGRQP
                     DLEKHEHIRTLISQGNSQRKVAKMLGCALGTVRNALNAEKTMG"
                     /name="recombinase family protein"
     gene            complement(3576..4505)
                     /locus_tag="M0769_RS24595"
                     /old_locus_tag="M0769_24595"
     CDS             complement(3576..4505)
                     /locus_tag="M0769_RS24595"
                     /old_locus_tag="M0769_24595"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_248352138.1"
                     /translation="MLLKPTALRTDGRTYQVFLPHIISELPERHSKRPSQWFKAALTRL
                     QGAPAELQELCTAKLISGEWNHRTDWISAFDALALLASSPDSYQNDDLINEIEDKTGLK
                     LPVPPGKSKHEALFGGLLIETLKRISETSGRQFSVITQKHFNGRRYRVDFLVTLEGIKR
                     NAPTKTYIIEFDEAFHAENRQRERDIERDRWFRKHEKTLDLIRVDHKHQDNWLKCLEGI
                     GEPRPIEHYYAHCIRVASEIRSKTERVITGESSKAAYDPAKNGCSCLLKRDKRRLNELS
                     SIMEKLNIPFRATDRLFVTRRTPSKYGL"
                     /name="hypothetical protein"
     gene            4562..4783
                     /locus_tag="M0769_RS24600"
                     /old_locus_tag="M0769_24600"
     CDS             4562..4783
                     /locus_tag="M0769_RS24600"
                     /old_locus_tag="M0769_24600"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_248352139.1"
                     /translation="MSVSDDIWQDIRFGKLQPFCRYGNFPPESTFVSVFWWQYVAGGNA
                     GWDDYRPALDELVYRGYLKRSPNGWYVF"
                     /name="hypothetical protein"
ORIGIN
        1 tttcatgcgt tctagtgccc ggaaaaccaa cgctgacaac ttgctgataa tgattgccgc
       61 tttccgtggg tcgatgctgg ggattagcac tctgacacac catgtagggc tactcgctaa
      121 gtttgatgca acgtctacca gttgcgggtc aacgtcagtg aagcgtcgtt cgccgatcat
      181 catcctccga gccagctcaa tgatagttgg atggtcacgg aggtgtgcca tatagaagcc
      241 tttcgttgcc ggggcttcag tactgacaaa aatccggtct gctgtattta gccgcgacat
      301 gtgactctca attgtcgaca tcgcgacaca gaacctttta gcttctttcg gtcgtaacga
      361 atccattaga taggctactg atggttcagc aagcagccct tttctactta gagccgattt
      421 aagctttact cgctggttta gctgaagctt ttcacagact ctctccagta catccaatac
      481 ctgaagtgct ctggtgtagt tctcgtacat gtagcctccg tacatttgtt ttctgttgct
      541 ttatggggtg atattagccg taatttgctg ggtgtggagt ggtgtgacat catgagatca
      601 tgtcacttac gatcactcaa ttaatgcagg tggtgtcaca tggcaagtca cagtgtcact
      661 gaggccgcaa agttagctgg tgtcactcgg cggacaattt accgccacat caaggctggc
      721 aagctctccg ctagtgtgac aggtggtgac aatacggtta ttgaaaccag tgagttactg
      781 cgggtttacg gtgcgttgtc acagcctgaa ccagggaagg tatccactgg atcacacgaa
      841 aatcagcctg aatatgtcac tctcttattg gctgaaatgt cacagctaag agaacaaatt
      901 agttcgttga cgagtaaggt cgatgagttg caaagtaagc tggctttacc tgcaccaaga
      961 gtgcgggagc aaagtgttct agaatgggtt agtgccagac ggaaactcaa gtgataatga
     1021 tgtggatgct atgagcgttg ttattgatag agagaaatat actgctttga tgccacttat
     1081 ccgtactacg ccagggtatg tgggggaaaa agtccagccg aataaataca cactgaagtg
     1141 ttcttttagc tctggttttg cgtgttgtat ttcaaagaat gataagaata ctaacttgtc
     1201 tgttcacttt gaaaatgagg gagctgacac ggccgctcat ttggctattc ttaatgcaat
     1261 cagctagttt ttgctgaaga aatttaattg aagggctgag tctcagccct tagctcatca
     1321 ggcaaattcc ttaatcattg tgaagaaact ctcttgattg aattggacac gctgagctgg
     1381 agtattacca ccttcgccat aaacaatcac ccatccagaa attttactga ttccgtcttt
     1441 ccaatggagt gagaatttag atgttgctgg agcccggtta gggttatgga tagacacttt
     1501 taggcaacct gttactccga agtaggcaaa cccttccgga ttgattgtta gtgttttact
     1561 gccatttttt aaggtgagat ttgatacttc aaatcggtca gtgttctcga ttacttgcat
     1621 tgtgccgaca ctagctgtta ctggtgaccc agcaaaccac tctttgatct ctagaatcag
     1681 tttttttgtg tcttcttgga acgctagcac ttcacgtttg aagtcttctt cggcttcttt
     1741 ctgtgtcttt gcattgcttt ctactgtccg gaaaaactcg tcttttgctg acatcttgga
     1801 atcctctttt tagggtatca gcgatatggg ggagattgtt cgttgtttca acaactaaca
     1861 ggcagaaaat ggcaatgaag tacctaatgc ccccgtggtg ggtacaccag aaaacgggag
     1921 cggagcgacc agcgtcaggt cgttctttta gatacttatt gtgtgggtga tgagccagac
     1981 cttggcaatt acacgtcacc gcaacagcta ccttgaagct cactttatca ggtacgttat
     2041 tggttaacgt gagaccgggc agagccagca tctttcccgt gctggttagg ttcccaccgt
     2101 ttgcctgttt atcctgccgg agtccggggc gtagacctga gtttcaaggg tgcagatgtg
     2161 ggtttaatgt cgttgaatgg tattaagctg gtagtgacat agctagccag ccctgctagg
     2221 attggattgt cgaagtctga tcctggcagg catctgcaag aattagagta ccgaagccct
     2281 gtgattctgt cacggggctt ttgtacattt gagggttgat catcccattg ttttctccgc
     2341 attaagtgcg tttcttaccg ttcccaaggc acaacccagc atcttagcta cctttctctg
     2401 cgagtttccc tgagatatca gcgtccgaat gtgctcatgt ttttccaaat ctggctgtcg
     2461 ccctttgtag agccccattt ctttagcctt ctcgatgccc tgagcctgac ggcggcgacg
     2521 gtcggtatag tccttgcggg ctatggcggc tagcatatcg agcatcatcc cgttgatggc
     2581 attcatcatc gaacgcatga actcatcatt cccggattgc agttgcaggt agctggttgg
     2641 cagatcaaga gcgactatcc tgattccctt gctctggatt acacctctga ggcgttccca
     2701 atcgtctgca tcgaggcgac tgaggcggtc aatctgttca actagcagaa tgtcacctgc
     2761 ctgagccaca gcgagcagcc ggaacagttc aggacgttgt agcgatgcac cagatacgtt
     2821 ctcgatgaag tttgcagcga tggttaatcc gtgttcttcc gcgaaggtgt tcagtgattg
     2881 tgatgctcgg gcagcatctt gttcagctgt ggatgcccgc aggtaagcgt aagtcctcat
     2941 ttcgtcctct gtatcatttt ggtgtgtcac tatggtggtg tcacattttg agttatcggt
     3001 ggggtctaaa tgtaccggtt ttggagtggg taaagccgct atagctgagg tatacccata
     3061 gtgaactggt cagattgtgc cggacagtcc gtcgatgata gcggcaagga atgccgttgc
     3121 tgctgccatc agtgcatgcc tgaataacgc catgaatcgc attttgagag cctctttagt
     3181 gtgcatgtgt aattcggtgt gaatatttca ctcatcggct tacagagcgt ctggtggctt
     3241 ctgatgagtg tgtttttggt gtggcttcat ttggtatgtg attctgatac ctgtagttca
     3301 cgaatttgtt ggtcctatgc ggcttttgac tggatgtagt gcggtgagtt aggccagatt
     3361 tcatcttatg gctggagttg ctgatttggt tgccgcgtaa gtaaatacaa ggaagaaaaa
     3421 tcccgtaagg gatctgaagg caagttaata attaataaca agtaaatatc tatataaggg
     3481 tcttgaggtg gggttacaga ggttacaacg tttgagcacc tataaaatcg cagtgcatca
     3541 acatttcgtt gtaacttttc gtgtaacttt tgctattaaa gcccgtattt actgggggtg
     3601 cgtcgggtta cgaacagccg atcggttgct ctgaatggaa tgtttagctt ttccatgatg
     3661 gacgacaact cattcaggcg gcgtttatcg cgttttaaca ggcaggaaca gccatttttc
     3721 gccgggtcgt aggccgcttt tgatgactcc ccggtaataa cccgctccgt tttcgacctg
     3781 atctcgctgg ctactcggat gcagtgagcg taatagtgct ctattgggcg tggttctccg
     3841 ataccttcaa ggcatttaag ccagttgtct tggtgtttat gatctactcg gatgaggtct
     3901 agggttttct catgttttct aaaccatctg tcacgctcaa tatccctttc tcgctgccga
     3961 ttctctgcat gaaatgcctc atcaaactca atgatgtatg tctttgttgg ggcgttacgc
     4021 tttattcctt cgagcgtgac aagaaaatct acgcggtatc tcctgccgtt gaaatgcttc
     4081 tgcgtgatga cgctgaattg tctaccgctg gtttctgaaa tgcgtttaag ggtttctatg
     4141 agcagcccgc caaataatgc ctcatgctta ctttttccag gcgggacagg gagttttaac
     4201 cctgttttat cttcgatttc gttgatgaga tcatcgttct ggtagctatc aggactactg
     4261 gcaagcaagg ccagagcgtc aaatgccgaa atccaatctg tacggtgatt ccactcgccg
     4321 gaaataagct ttgccgtgca cagttcttgc agttctgctg gggccccctg aaggcgtgtc
     4381 agtgcagcct tgaaccattg ggatggcctt ttgctgtgtc gttctgggag ttcactgatg
     4441 atatgtggca ggaatacttg atatgtccgg ccatctgttc ttagtgccgt tggtttgagt
     4501 aacaaaattc ctcctgtctg ataaataaat acaattacaa caacccttta aggaggattt
     4561 tatgagtgtc agtgatgata tttggcaaga tatacgattt gggaaactac agccattctg
     4621 ccgttatgga aatttccctc cggaatcgac gtttgtcagt gtgttctggt ggcagtatgt
     4681 ggctggcggc aatgctggat gggatgacta tagaccagcg ttagacgagc tggtctatag
     4741 aggttatctg aaacgaagcc ctaacggctg gtatgtgttt tagtacctca tttgctgtaa
     4801 ttcgtagctc attcgctgaa gttgggctac gtattgctgt ggtgcgggct tccc
//
