LOCUS       NZ_CP095565             3944 bp    DNA     circular CON 25-JUN-2023
DEFINITION  Klebsiella pneumoniae strain BA11088 plasmid p_unnamed_5, complete
            sequence.
ACCESSION   NZ_CP095565
VERSION     NZ_CP095565.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27555111
            Assembly: GCF_030322925.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3944)
  AUTHORS   Veeraraghavan,B., Shankar,C. and Teekaraman,M.
  TITLE     Klebsiella pneumoniae BA11088
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3944)
  AUTHORS   Veeraraghavan,B., Shankar,C. and Teekaraman,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2022) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method                   :: Unicycler v. June 2021
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 50.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/23/2023 17:43:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,450
            CDSs (total)                      :: 5,324
            Genes (coding)                    :: 5,176
            CDSs (with protein)               :: 5,176
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 66 of 148
            Pseudo Genes (incomplete)         :: 82 of 148
            Pseudo Genes (internal stop)      :: 23 of 148
            Pseudo Genes (multiple problems)  :: 21 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP095565.1.
            Bacteria and source DNA available from Department of Clinical
            Microbiology, Christian Medical College, Vellore, India.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3944
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="BA11088"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p_unnamed_5"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2020"
                     /collected_by="Department of Clinical Microbiology,
                     Christian Medical College and Hospital, Vellore"
     gene            complement(785..1207)
                     /locus_tag="MXX37_RS27230"
                     /old_locus_tag="MXX37_27190"
     CDS             complement(785..1207)
                     /locus_tag="MXX37_RS27230"
                     /old_locus_tag="MXX37_27190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_025714834.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTSINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKREPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1207..1398)
                     /locus_tag="MXX37_RS27235"
                     /old_locus_tag="MXX37_27195"
     CDS             complement(1207..1398)
                     /locus_tag="MXX37_RS27235"
                     /old_locus_tag="MXX37_27195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_023302508.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2273..2446
                     /locus_tag="MXX37_RS27240"
                     /old_locus_tag="MXX37_27200"
     CDS             2273..2446
                     /locus_tag="MXX37_RS27240"
                     /old_locus_tag="MXX37_27200"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_155765196.1"
                     /translation="MDIKTKLKRSLSSVESAISSLKRARGQTTDAYHEISKAIRELEDA
                     EYNIRKSIREME"
                     /name="hypothetical protein"
     gene            complement(2467..3234)
                     /locus_tag="MXX37_RS27245"
                     /old_locus_tag="MXX37_27205"
     CDS             complement(2467..3234)
                     /locus_tag="MXX37_RS27245"
                     /old_locus_tag="MXX37_27205"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_134881114.1"
                     /translation="MRFLWRPLPYSRLRECDFLNCIDENDSSSWIAALKIFICIVIKSD
                     LDENGEYCAMITYPQIQKMTGMSRQLICCGFDKLRFYKIISSEGVRKKKHSLLTCEKGS
                     TRQKPLTKRFDGLSAGRWCKLPLKGLIDDDGVIPSFLAMSNRNINDLHALRLFIYLLSV
                     RRHGDVFIVVKAETLMKKLRLKRVQLTLALAHMSALGLIVKERYREGDFLSLNKTPAYA
                     FLLCGWDVLEWNHNRIKESNWRNDYLESFDNWA"
                     /name="hypothetical protein"
     gene            3710..3865
                     /locus_tag="MXX37_RS27250"
                     /old_locus_tag="MXX37_27210"
     CDS             3710..3865
                     /locus_tag="MXX37_RS27250"
                     /old_locus_tag="MXX37_27210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010251985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1508 domain-containing protein"
                     /protein_id="WP_064761103.1"
                     /translation="MNDTWDFYTDGKGEWRWRRTASNGRIVGASSQGYVNRADCIANAR
                     RNGYTG"
                     /name="DUF1508 domain-containing protein"
     Typing          1622..2099
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.157"
                     /coverage="94.0"
                     /evalue="3.6e-169"
ORIGIN
        1 ctacagaaaa accttaagcc tcttcggggg ctttttttac ttctgtcatt taacataacc
       61 ccctgattgt acgcaccgct aaaacggcct cagggcgttt ctgacgggaa accggtaaaa
      121 caggcaacaa accacccgaa aacccgccag aaacgcgcag gctctgtttt tacggtatgc
      181 atgagtatgc gcgcaagtgc atagcgcgga aattgacacc attcagccag ggtaagtcct
      241 gtttccgacg ttctttccat ccgaaaacgg tgaacgggga cgcaatttat tgcgtggccg
      301 tgaagcgttg ccggcgcagc cggaaaaccg gttttcagca cgttcaggaa tccggttcgt
      361 cgacggccgg caatcacgtt atggcaagtc gccggacgac tcaccacacg attcaccggc
      421 gactcttcac tagagtcgta cccagagtcg ccgcgtctaa aaaacaacca aacggggagt
      481 cgtgtctaga gtcgggtcgt tattaactta ttgttttata gtcctgagtc gtcaccgact
      541 ctatgacgac tcgccggcga ctctatgacg agtcgtcata gagtcggatc tatataaata
      601 aaatttaaaa agcgaaattt caggaaagta acccactgat attaaataca aatctgaaaa
      661 attttaattt tgcgtggggt gtgggtattt ttagtggtga ggagcgttca gagatctgac
      721 gatttttggg aaggttcagg aactccccgg gatggccgga gaggaaaaca gaagcatgac
      781 ggggtcagga ttttttccag aatttccacc acggggaatg gggtggtgaa gaaggctcgc
      841 gcttgtgctc cagaagctgc atagcctgac gaagggaatc aatatgctca tctcgagcct
      901 taacagcccc tttaagacca tcgttttcag cttcaagtaa agcgattcta tgttgtaaat
      961 catgtaaacc aacgctgtta atacttgtag attctgcgtc actttttaca tcatatttta
     1021 cagtatcgat cacaccatca agagaaccaa acactctaat aagctctgaa gtatcaataa
     1081 ctttaatagc cttcccgtgc tttacaacag aggtgtaact taacttccca ctgttaatca
     1141 tcttgtaaat tgtgggacgg ctaaccttaa caagccgtgc cgcttcacta atagacactc
     1201 tggccatcaa ttaccatcct gtaattcatc cagtctcgag gacagtgtac ggaaaagatg
     1261 ctccgcatca tcgtggagtt tctcacaaag atcggcctca acatcgagat caagctcgtt
     1321 aagcttctcc agcaggagca gagactgatt ctggatgaat ttagccatgt tcagcgctgt
     1381 tttctgttgt ttcgtcataa agggcctcag agcgtcagtg ctcaatgtca gacagatctc
     1441 ttttccgctt cctcgctcac tcagtcgcta cgctcctgcc gttcggctgc ggcgagcggt
     1501 cgcaacgcgc acataacgac atagagcaga cagctcggag agggagaagg cagcacaacg
     1561 gccgtttttc cataggctcc gcccccctga caagcatcac agaatttgac gctcaaatca
     1621 gtggtggcga aacccgacag gactataaag ataccaggcg tttccccctg atggctccct
     1681 cgtgcgctct cctgttcctg ccattcggtt taccggtgtc attccgctgt tatggccgcg
     1741 tttgtctcat tccacgcctg acactcagtt ccgggtaggc agttcgctcc aagctggact
     1801 gtatgcacga accccccgtt cagtccgact gctgcgtctt atccggtaac tatcatcttg
     1861 agtccaaccc ggaaagacac gacaaagcgc cactggcagc agccactggt aaacaggatg
     1921 tgcgagagat gtatttgagt tcttgaagtg aagacctaac tgaggctaca ctggaaggac
     1981 ggatttggtg acacgtctcg cacaagactg ttaccacggt tcataaactt gccggttaat
     2041 gaaccttcga aaaaccacct tgccgggtgg ttttttcgtt tacagagcaa gagactacga
     2101 cgccgaggaa aggatcacaa gcaaatccgt tagatacata gacataaatc aaacccaaac
     2161 cagcaccact taacaacacc aacaacttat ttcattgatt ttattgtaat aaaatccatc
     2221 cactagggtg ttgcacaatc accctagcag cagataaaaa cagaggttca atatggatat
     2281 caagacaaag cttaaacgtt ctttaagttc tgtggaaagt gcaatttcat ctttaaagcg
     2341 tgcaagaggg caaactacgg atgcatacca tgaaataagc aaagcaattc gtgaacttga
     2401 ggatgccgag tacaacataa ggaaatccat tcgtgagatg gagtgagtta tatagataac
     2461 tgggcttcaa gcccagttat caaacgactc taaataatca tttctccagt tgctctcttt
     2521 tattctattg tgattccatt caagaacatc ccacccacac aataaaaaag catatgcagg
     2581 tgttttattt aaactcaaaa aatcgccctc cctatatcgc tctttaacta tcaaccccaa
     2641 agctgacata tgagccaaag ccaatgttag ctgaactctt ttaagtcgta attttttcat
     2701 cagcgtttct gcttttacaa caataaaaac atcaccatgc cgtctcactg acaacaaata
     2761 gataaacaac cgaagtgcat gaaggtcgtt aatatttcta ttgctcattg ccagaaacga
     2821 agggattaca ccatcatcat caatcaatcc ttttaacggg agtttacacc atcgccccgc
     2881 tgacagccca tcaaaccttt tcgtcaaagg tttttgtctt gtagagcctt tttcacaagt
     2941 taataatgaa tgcttttttt tcctaacacc ttcgctagat attattttat aaaacctcaa
     3001 cttatcaaaa ccacaacata ttaactgcct actcatccct gtcattttct ggatttgtgg
     3061 atacgtaatc attgcacaat actctccatt ctcatccaga tcagatttaa taacaatgca
     3121 aatgaatatt ttcaatgcag ctatccatga agacgaatca ttttcatcaa tacagtttaa
     3181 aaaatcacat tctcttaacc tagagtaagg caaaggcctc cataaaaacc gcatagcttc
     3241 accttaatta tttaaaaaga taccaagaaa ttattaataa cgtcacagag attacaagct
     3301 gggttaactc accagaaatc gctgcaactc tctcgagcaa cttcacatac ttttctagac
     3361 ccatgacact ctcctcccga aaacacctct gctcaaatct tgaaaaaatc atgacacata
     3421 ataaaaagac ttataagtct ttttattata atctttctag aataaacaaa aagataaaaa
     3481 gctttaaaat caacaaaata acaattaaag atagtctatt aagataccaa gatagtctat
     3541 gtgcatcaca agaagccttt agacctaatg agacggcatt gcatgggtaa catgtaacag
     3601 aaattcctat cgtactcgca tcgcaaaaca cactcttatc gattgaaaaa gaggagaaat
     3661 gctttatatc aatcttgggg atccccacac agcacaggat aaaaacagaa tgaacgatac
     3721 atgggatttt tatactgatg gtaaaggcga atggcgctgg cgcagaacgg ccagcaatgg
     3781 tcgtattgtt ggtgcatcca gtcagggcta tgtaaaccga gcggattgta tcgctaatgc
     3841 ccgccgcaat ggttacaccg gctagtcttg gatcaggtat acgactggaa tgtggctgtc
     3901 agtcggtaac gggtactgtc aaacaggtca ccagtttttc ctcc
//
