LOCUS       NZ_CP095564             3991 bp    DNA     circular CON 25-JUN-2023
DEFINITION  Klebsiella pneumoniae strain BA11088 plasmid p_unnamed_4, complete
            sequence.
ACCESSION   NZ_CP095564
VERSION     NZ_CP095564.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27555111
            Assembly: GCF_030322925.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3991)
  AUTHORS   Veeraraghavan,B., Shankar,C. and Teekaraman,M.
  TITLE     Klebsiella pneumoniae BA11088
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3991)
  AUTHORS   Veeraraghavan,B., Shankar,C. and Teekaraman,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2022) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method                   :: Unicycler v. June 2021
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 50.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/23/2023 17:43:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,450
            CDSs (total)                      :: 5,324
            Genes (coding)                    :: 5,176
            CDSs (with protein)               :: 5,176
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 66 of 148
            Pseudo Genes (incomplete)         :: 82 of 148
            Pseudo Genes (internal stop)      :: 23 of 148
            Pseudo Genes (multiple problems)  :: 21 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP095564.1.
            Bacteria and source DNA available from Department of Clinical
            Microbiology, Christian Medical College, Vellore, India.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3991
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="BA11088"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p_unnamed_4"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2020"
                     /collected_by="Department of Clinical Microbiology,
                     Christian Medical College and Hospital, Vellore"
     gene            join(3567..3991,1..550)
                     /locus_tag="MXX37_RS27205"
                     /old_locus_tag="MXX37_27165"
     CDS             join(3567..3991,1..550)
                     /locus_tag="MXX37_RS27205"
                     /old_locus_tag="MXX37_27165"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_114269875.1"
                     /translation="MAFFNLLFVASLICFGGVMGSYSRGCRDSQNKFSKDKDENNKRAS
                     VYRFGIASAFICVPFISSFLHVDYSSIIFPVADGGGTKFIEQILLLISVSGISAYLGYA
                     LLDGLANKVLKEQVDGIDKKQQDLEAEQDEFKDELDRSKELIEQLEMDKKTTKFELGYF
                     KAISAVDKAESMMSIPDEALSVKKKLTEALDAVTESLSLVKREDVAKDDYDKLLVLKAY
                     ILKRLDRIDDALSITDELLMSNEDNPILIYNKACYQYILRRCQADNSDIKDMIRRALTI
                     KVTDPEFIRRQEKIRTKVIGNKDNDLEGLFTDAELEELKVAIK"
                     /name="hypothetical protein"
     gene            complement(777..889)
                     /locus_tag="MXX37_RS27210"
                     /old_locus_tag="MXX37_27170"
                     /pseudo=""
     CDS             complement(777..889)
                     /locus_tag="MXX37_RS27210"
                     /old_locus_tag="MXX37_27170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            1297..1488
                     /locus_tag="MXX37_RS27215"
                     /old_locus_tag="MXX37_27175"
     CDS             1297..1488
                     /locus_tag="MXX37_RS27215"
                     /old_locus_tag="MXX37_27175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_040198051.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLDKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1488..1910
                     /locus_tag="MXX37_RS27220"
                     /old_locus_tag="MXX37_27180"
     CDS             1488..1910
                     /locus_tag="MXX37_RS27220"
                     /old_locus_tag="MXX37_27180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_040214596.1"
                     /translation="MAIVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGINSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            2714..2986
                     /locus_tag="MXX37_RS27225"
                     /old_locus_tag="MXX37_27185"
     CDS             2714..2986
                     /locus_tag="MXX37_RS27225"
                     /old_locus_tag="MXX37_27185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004897311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_019405140.1"
                     /translation="MATDAQVKEINALIKKYPDSCSICHEVYDEDDVTYTVFGYDRKGK
                     IQVTTGCCAGMLTEPVLLGVCGCFDPEERDEIMQNHPMAKQFFTE"
                     /name="hypothetical protein"
     Typing          complement(778..1249)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.777"
                     /coverage="92.0"
                     /evalue="7.8799999999999974e-146"
ORIGIN
        1 caaggagctg atagaacagc ttgaaatgga taagaaaaca acaaaattcg agctaggata
       61 ctttaaagcc atttcagctg tggataaagc agaatcaatg atgtccattc cggatgaggc
      121 tctttctgtt aagaaaaaac taactgaggc attagatgct gtaacggaat cattgtctct
      181 tgttaaaaga gaggatgtag ctaaggatga ctacgacaag ctcttagtgc ttaaagctta
      241 tattttgaaa agacttgatc gtattgatga tgctctgtca attacggatg agttacttat
      301 gagtaatgag gataacccta tacttattta caataaggct tgctatcaat atattttgcg
      361 tcgttgccaa gctgataact ccgatattaa ggatatgatt cgcagggctc tgactattaa
      421 agttacagat cctgaattca ttcgcaggca agaaaaaata agaaccaagg tcataggaaa
      481 taaagataat gatcttgaag ggttgtttac tgacgctgag ctggaggaat taaaggtggc
      541 tatcaaatag gcagtggcta gctctatgaa ttccaaaaag atccttgacg atcctttgag
      601 gtgcagcgta ctctacccct caaacgaaaa aaccacccgg caaggtggtt tttcgaaggt
      661 tcagtaaccg gcaagtttct gaaccgaggt aactggctta gaggagcgca gtcaccaaaa
      721 cagttcgttt agtttagcct taactggcgc ataacttcaa gactaactcc tctaaatcaa
      781 ttaccagtgg ctgctgccaa tggcgataag tcgtgtcttt ccgggttgga ctcaagagat
      841 agttactgga acgggcgcag cagtcggact gaacgggggg ttcgtgcata cagtccagct
      901 tggagcgaac tgccttcccg gagccgagta tcaggcatgg aatgagaaaa cgcggccata
      961 acagcggaat gacaccggta aaccgaaagg caggaacagg agagcgcacg agggagccac
     1021 cagggggaaa cgcctggtat ctttaagtcc tgtcgggttt cgccaccact gatttgagcg
     1081 tccgtttccg cgatgcttgt caggggggcg gagcctatgg aaaaacagcc gttcggcggc
     1141 ctttgctttt ctgcctcata tcttggttgc ctacgttttt atgtacacgc tcctgccgct
     1201 cgccgcagcc gaacggctgg agcgtagcga ctgagtgagc gaggaagcgg aaaagagact
     1261 agtttgacat tgagcactga cgctctgagg cttcttatga caaaacaaca gaaaacagcg
     1321 ctgaacatgg ctaaattcat ccagaatcag tctctgctcc tgctggataa gcttaacgag
     1381 cttgatctcg atgtcgaggc cgacctttgt gagaaactcc atgatgatgc ggagcatctt
     1441 ttccgtacac tgtcctcgag actggatgaa ttacaggatg gtaactgatg gccatagtgt
     1501 ctattagtga agcggcacgg cttgttaagg ttagtcgccc cacaatttac aagatgatta
     1561 acagtgggaa gttaagttac acctctgtgg taaagcacgg gaaagctatt aaagttattg
     1621 atacttcaga gctaattaga gtgtttggtt ctcttgatgg tgtaatcgat actgtaaaat
     1681 atgatgtaaa aagtgacgca gaatctacag gtattaacag cgttggttta catgatttac
     1741 aacatagaat cgctttactt gaagctgaaa acgatggtct taaaggggct gttaaggctc
     1801 gagatgagca tattgattcc cttcgtcagg ctatgcagct tctggagcac aagcacgaac
     1861 cttcttcacc accccattcc ccgtggtgga aattctggaa aaaatcctga tcccgccatg
     1921 cttccatttt gctctccggc cattccgggg agttcctgaa ccttcccaaa aatcgtcaga
     1981 tccctgaacg ctcctcacca ctaaaaatac ccacacacta cgcaaaatta aaattttgca
     2041 gatagacctt tattttcaat cagttatcta ttttaaatta cgcaatttta ttttttgtaa
     2101 ggtgaatccg agtcgtggac gactctatgg cgaatcgccg atgacttgcc cacgattcat
     2161 atgtgaatca cgccatataa tcagtacgtt atgatgactt gactctagag tcgacttgcc
     2221 gggttggtgg ctttttgacc atggcgactc tagagtcaag tcacgagtcg aatcgccggt
     2281 gaatcgtgtg gtgagtcgtc cggcgacttg ccataatgtg attgctggtc tcgacaaacc
     2341 cgattcctga acgtgctgaa aaccggtttt ccggctgcgc cggcaacgct tcacggccac
     2401 gcaataaatt gcgcacccgt tcaccgtttt cagtctggtt tggtgcgggt tttgagttgc
     2461 ctggcctgaa ttcaggctga aatccccaga cagtcagtca agtgcataac gattcatgcc
     2521 cgtaaaacgc cctggagcga ttttgaggcg ttttcagggg gtaagacgta ggatttaatg
     2581 ggttacgccc cagaatcgtt ctgaggccgt tttagcggtg cgtgtaatgg gacgttatgg
     2641 taaatcaacg gcggatgcct gagtctgtgt tagagtcagc ggattgtgat aatcagtgac
     2701 tcagggagat gttttggcta ctgacgctca ggtaaaagaa attaatgcac tcatcaaaaa
     2761 atacccggac tcatgctcca tctgtcatga agtctatgat gaggatgatg tgacctacac
     2821 cgtttttggg tatgaccgga aaggtaaaat acaggtcacc acgggatgct gtgccggaat
     2881 gctgacagag ccggttctgc tgggtgtctg tgggtgcttt gacccggaag aacgtgacga
     2941 gatcatgcag aatcacccca tggcaaagca gtttttcaca gagtgattcc gtatctgttg
     3001 agtctgaagc ccgccttgtg cgggcttttt catatctgcg tgaaatgagg cgttatggta
     3061 aatgcacgca ttcattcttt tgaaaaatcc agaatgacga atacatgggg catgtttata
     3121 tgactattga gaggaaggat gttattgtaa aaaaatcctt taaattcaat catttaatta
     3181 tggtagccaa aggggcgggg cttcgcttat tcctaaggaa taagcgaagc cccgcccctt
     3241 tggctaccag tgcattatac tttttttttc acccaatgtc aatacatggg ttgattttat
     3301 cattttaagc atttttgttg ttgtgagtgc tgggtttatg ccctatattc agcgctaagc
     3361 aagcatgggc ttgcaaagga acaattaatg agaggtgctc tatgaaaaaa atcaaacttc
     3421 acgatgagcg tccagacttg taagtgtcaa gtcagcagaa aaaggcagcc aaggctgcct
     3481 tttttgttat tggttagtat atgattgagc ttatcttaac ttacctgaac aaagttttat
     3541 tgtttgcttt gcgcaaggat tctctcatgg ctttttttaa cctattgttt gttgcatctc
     3601 taatttgttt tggtggtgtt atggggagct attccagagg ttgccgagac tcccaaaata
     3661 aattttcaaa agataaggat gagaataata aaagagctag tgtttataga tttggtatag
     3721 catccgcatt tatttgtgtt cctttcatat catcatttct tcatgttgat tactcaagta
     3781 taatatttcc tgtggctgat ggtggtggaa ctaagttcat agaacaaata ttgcttctta
     3841 tttctgtttc ggggatctct gcgtatcttg ggtacgcatt actggatggt cttgccaaca
     3901 aagtattaaa agagcaagta gacggtatag ataaaaagca acaagatttg gaggctgaac
     3961 aagatgagtt taaagatgag cttgatagga g
//
