LOCUS       NZ_CP095563             3998 bp    DNA     circular CON 25-JUN-2023
DEFINITION  Klebsiella pneumoniae strain BA11088 plasmid p_unnamed_3, complete
            sequence.
ACCESSION   NZ_CP095563
VERSION     NZ_CP095563.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27555111
            Assembly: GCF_030322925.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3998)
  AUTHORS   Veeraraghavan,B., Shankar,C. and Teekaraman,M.
  TITLE     Klebsiella pneumoniae BA11088
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3998)
  AUTHORS   Veeraraghavan,B., Shankar,C. and Teekaraman,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2022) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method                   :: Unicycler v. June 2021
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 50.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/23/2023 17:43:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,450
            CDSs (total)                      :: 5,324
            Genes (coding)                    :: 5,176
            CDSs (with protein)               :: 5,176
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 66 of 148
            Pseudo Genes (incomplete)         :: 82 of 148
            Pseudo Genes (internal stop)      :: 23 of 148
            Pseudo Genes (multiple problems)  :: 21 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP095563.1.
            Bacteria and source DNA available from Department of Clinical
            Microbiology, Christian Medical College, Vellore, India.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3998
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="BA11088"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p_unnamed_3"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2020"
                     /collected_by="Department of Clinical Microbiology,
                     Christian Medical College and Hospital, Vellore"
     gene            complement(join(3617..3998,1..812))
                     /gene="mobQ"
                     /locus_tag="MXX37_RS27180"
                     /old_locus_tag="MXX37_27140"
     CDS             complement(join(3617..3998,1..812))
                     /gene="mobQ"
                     /locus_tag="MXX37_RS27180"
                     /old_locus_tag="MXX37_27140"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_076997031.1"
                     /translation="MATFHISFKKLRRSEGKSSVYLSAYQNREKTKDNRTGATWDYSKK
                     EGFFGSAILSPAGTPAELVKDSGTLWNAVEAGEKRKDAELCRYLDIAIPKELDDGQKKQ
                     IVLDYCQENFVDYGMIADIAFHDLDSHNPHAHVMLTLRTVSPNGFGNKQREWNNRENIE
                     AWRVNWEIIANDRLKKYGHKSRIDSRSLKDQKEEAERKAVFAKTPKEKAKWISKTIELD
                     RTPMTRIHRHQWRKGQKLRAMEQKEKALLLKIANATYLQQTKPPQPEETMKIEKKPLAR
                     SIIDNLKALYKKTQHIFKSKPNVNKNKKEEKEDPQNFVSSYVINEFGEHILKTELETKP
                     KTGTGTGTGGNNGGGKMGSGSGMSPMNQPQPKIEEPEPEPMPEFEDQQPKRKKKFGM"
                     /name="mobQ"
     gene            1056..1439
                     /locus_tag="MXX37_RS27185"
                     /old_locus_tag="MXX37_27145"
     CDS             1056..1439
                     /locus_tag="MXX37_RS27185"
                     /old_locus_tag="MXX37_27145"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071579763.1"
                     /translation="MNKLITEAEGAKIESVFKYILEASESILIEHGHVITGQIIKNKKF
                     FADNGHKDFERLEYYLSSAISSLVEDKVTEGIKDINTDENLVFKKINELSDKEKLILAE
                     CIIKHFEYSNVRGMQKAFNIFGG"
                     /name="hypothetical protein"
     gene            1443..1727
                     /locus_tag="MXX37_RS27190"
                     /old_locus_tag="MXX37_27150"
     CDS             1443..1727
                     /locus_tag="MXX37_RS27190"
                     /old_locus_tag="MXX37_27150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001549726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_071579762.1"
                     /translation="MSKTTAQQIADLQNKLQALRTKKARQDRREETRQKIILGAEVAKV
                     LGKKPEEINKALILGLLSKINELDEEEKQEFTRLGLNILEEWKNENRKP"
                     /name="conjugal transfer protein TraD"
     gene            complement(1966..2229)
                     /locus_tag="MXX37_RS27195"
                     /old_locus_tag="MXX37_27155"
     CDS             complement(1966..2229)
                     /locus_tag="MXX37_RS27195"
                     /old_locus_tag="MXX37_27155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001722510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045287009.1"
                     /translation="MIINGKKIKAKEIMEMTGRSERTVRKYFSQSRDDYEKTAMDRRRQ
                     AYELRSQGLKWQQVADKMGCSYHGAVALYRRYVALDMPQNSL"
                     /name="hypothetical protein"
     gene            complement(2226..3080)
                     /locus_tag="MXX37_RS27200"
                     /old_locus_tag="MXX37_27160"
     CDS             complement(2226..3080)
                     /locus_tag="MXX37_RS27200"
                     /old_locus_tag="MXX37_27160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000586611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071579761.1"
                     /translation="MIIQEEHNIDFFKNQMPNKPYCTNNLDMGLSIRNKAKALEMLYLQ
                     ANQPAIQTCLLFDLDKKNSFYTFEQVGLPIPHFITKTPKTGRCHYGYMLKAGVCKTQQA
                     RLKPLKYAAAVEMAMAKKLKADLGFAGLITKNPLNDHWSPFWSGADLYDLDYLADFVDL
                     EKPQIQKKKSEAYGLGRNVNLFEDLRQYAYRTVLNFKKISTFEKFENELLLKAQGLNTF
                     CNPQNPLQYKEIKATVRSVARWTWKNFDSHTFSQIQSNRAKKPRKTNVKNEMLDILMSK
                     GVL"
                     /name="replication initiation protein"
     Typing          complement(4..812)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="85.0"
                     /evalue="0.0"
ORIGIN
        1 gtttcctctg gctgaggtgg tttggtttgc tgtaagtatg ttgcattagc tatttttaat
       61 aataatgctt tttctttttg ctccatagct cttaattttt gaccttttcg ccattggtgc
      121 ctgtgtatcc tggtcattgg cgttctgtcc agttcaatag tttttgaaat ccacttggct
      181 ttctctttcg gagttttagc aaaaacagcc tttctttctg cctcttcttt ttggtctttt
      241 aatgaacggg agtcaatacg agatttatga ccatattttt ttaatcggtc atttgctatt
      301 atttcccagt taactcgcca ggcttcaatg ttttctctat tattccattc tctttgtttg
      361 ttcccaaatc catttgggct aacagttctt aaagttagca ttacatgagc atgagggtta
      421 tgactatcaa gatcatgaaa tgctatgtct gcaatcattc cataatccac gaaattttct
      481 tggcagtaat cgaggacgat ctgcttcttc tggccgtcgt ccagctcctt ggggatggct
      541 atgtccagat aacggcataa ttcggcatcc tttcgcttct cgccagcctc tacggcattc
      601 cagagggtgc ctgagtcctt caccagttcg gcaggtgtgc cggcagggga gaggatagca
      661 gagccgaaaa atccctcttt ttttgaataa tcccaggttg ccccggttcg attatctttt
      721 gtcttttctc ggttttgata tgcagataaa taaaccgaag atttaccttc tgatcttcgt
      781 aattttttaa agctgatatg aaatgtcgcc atagtctacc ccttactttt tttgtctttt
      841 gaattttggt ttttagcccc gcagggccca tacgtcgcaa gcgacgtgta agtgggcatt
      901 actaatatta ttttttcggt tgcacctcaa aataataagt aatgaacccc aggcttcgcc
      961 caatattaaa tattatttgt tttattctaa aatatatttg actaaagtaa ataatggagg
     1021 taataaataa caaaataaat aattaggagg ttattatgaa taaacttata acagaggcag
     1081 aaggtgcaaa aatcgaaagt gtttttaaat acatattaga ggcatctgaa agcatattaa
     1141 tagagcatgg gcatgttatt acggggcaaa taataaaaaa caaaaagttc tttgctgata
     1201 acgggcataa agattttgaa aggttagagt attaccttag ctcggcaatt agttctcttg
     1261 tcgaggataa ggtaacagaa ggcattaaag acattaacac ggatgagaac cttgttttta
     1321 aaaaaataaa tgaattgagt gacaaggaaa aattaatttt agcagagtgc attattaaac
     1381 attttgaata ttcaaatgtt agaggaatgc aaaaggcatt taatattttt ggggggtaat
     1441 ggatgagtaa aacgacagca cagcagatcg cagatttgca aaataaacta caagcattaa
     1501 gaacaaaaaa agcaagacag gacagaaggg aagaaacaag acaaaaaata atcctgggtg
     1561 cagaagtggc taaggtttta ggtaaaaaac cggaggaaat taacaaggct ttaattcttg
     1621 ggttgttaag taaaataaat gaacttgacg aagaagaaaa acaagaattc acacgattag
     1681 gattaaatat tttagaagag tggaagaatg aaaatcgtaa accgtgaaca ataaaaaacc
     1741 agccgatctt ggctggtttt ttactgtgaa gggttgccag gcttgcctgg aggtcttaaa
     1801 aaggctcaga gaggctctca gggcttatgg gtgggtttgt tgattgttgg gtacctgagt
     1861 gcctctcagt tcgagataca gggcccggat acggggaaag gggaaaaaat ccccccaggg
     1921 gtggagggtt tggttaggtt agggggaaaa actgcttaga agtcgttaca ggctgttttg
     1981 aggcatatct aaggcaacat aacggcgata cagggcaacg gctccgtgat acgaacagcc
     2041 cattttgtcg gctacttgtt gccatttcag cccctggctt cgtagttcgt aagcctgacg
     2101 acgacgatcc attgctgttt tttcgtaatc gtcacgagat tgagaaaaat attttcttac
     2161 agttctttca ctacgacctg tcatttccat tatttctttt gcttttattt ttttaccatt
     2221 aatgatcata aaaccccctt gctcattaat atgtctaaca tttcattttt aacattggtt
     2281 tttcgaggtt ttttggctct gtttgattgg atttgtgaaa atgtatggct atcaaaattt
     2341 ttccaagtcc aacgggctac acttctaact gttgctttta tctctttgta ttgtaacggg
     2401 ttttgtggat tgcaaaaagt gtttaagccc tgtgccttta atagtagttc gttttcgaat
     2461 ttctcgaaag tggatatttt tttgaaattt aaaaccgttc tgtaagcata ttgccgtaga
     2521 tcttcaaaca aattaacatt gcgacctaaa ccataagcct cgcttttttt cttttgtatt
     2581 tgaggctttt ctaagtccac aaaatcagct aaataatcca ggtcataaag gtcagcacct
     2641 gaccagaacg gcgaccagtg atcattgagt gggttttttg taatcaatcc agcaaacccc
     2701 agatctgctt ttagtttttt cgccatagcc atttcaacgg ctgcggcata cttcaacggc
     2761 tttaaccttg cttgttgtgt cttacaaacc ccggctttca gcatatagcc gtagtgacaa
     2821 cgacctgttt ttggtgtttt tgtaataaag tgaggtatgg gtaagcccac ctgctcaaat
     2881 gtatagaatg aatttttctt atctagatca aagagtaagc aagtttgaat ggctggctga
     2941 tttgcctgta aatacagcat ttcaagggct tttgccttgt tccttatgct taatcccata
     3001 tcgaggttat ttgtacaata aggcttgtta ggcatttgat ttttaaaaaa atcgatgtta
     3061 tgttcttctt gtattatcat tttttcagtc ctttttatct ggccctactc tctgttttct
     3121 gtcgccaaaa caaaatcgca gagggtgggg tttttatttt tatagatttt tcaatcctgt
     3181 accagttcta accgatctca aaaatttgtc aagtgtgcgt ctaaccatat cagataacag
     3241 cccaacgaag ttggggcagt tctttacata cggcagcaaa gcattactat cagatctatg
     3301 gtgcgaagca ttaccgaaga tagaaaaaca ataaaaaaag aaaaaagagt attgttcgaa
     3361 gaaaaattgg cgattcgatt ttttttggtg aatatatgaa aaaaaagaaa gtgcagaaaa
     3421 aacggaaaag aaataagcat agtaaatttt ttaaaatgct tatgaagtca gttaatgaag
     3481 ctgtggcaat acataaaggg gaaatagaac cggcgaggat cacaactcta aaaatgtagt
     3541 atcttatagt atagtattaa ataatattaa gttgtattaa gtgatactac tatataggaa
     3601 tatataccac tatatactac attccaaatt tcttcttcct cttaggttgc tgatcttcga
     3661 attccggcat tggttccggc tcaggctctt caatttttgg ttgtggttgg ttcataggag
     3721 acattccaga gcctgaaccc atttttccgc ctccattatt tccaccggtt ccggttcctg
     3781 tgcctgtttt aggttttgtt tctaactctg tctttaatat atgttcgcca aattcattta
     3841 ttacataact actaacgaaa ttttgaggat cttctttttc ttctttttta tttttattta
     3901 cattaggttt tgatttaaat atatgctggg tctttttgta taatgccttt aaattatcaa
     3961 tgattgacct tgcaagaggc tttttctcta ttttcata
//
