LOCUS       NZ_CP095562             4167 bp    DNA     circular CON 25-JUN-2023
DEFINITION  Klebsiella pneumoniae strain BA11088 plasmid p_unnamed_2, complete
            sequence.
ACCESSION   NZ_CP095562
VERSION     NZ_CP095562.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27555111
            Assembly: GCF_030322925.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4167)
  AUTHORS   Veeraraghavan,B., Shankar,C. and Teekaraman,M.
  TITLE     Klebsiella pneumoniae BA11088
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4167)
  AUTHORS   Veeraraghavan,B., Shankar,C. and Teekaraman,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2022) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method                   :: Unicycler v. June 2021
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 50.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/23/2023 17:43:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,450
            CDSs (total)                      :: 5,324
            Genes (coding)                    :: 5,176
            CDSs (with protein)               :: 5,176
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 66 of 148
            Pseudo Genes (incomplete)         :: 82 of 148
            Pseudo Genes (internal stop)      :: 23 of 148
            Pseudo Genes (multiple problems)  :: 21 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP095562.1.
            Bacteria and source DNA available from Department of Clinical
            Microbiology, Christian Medical College, Vellore, India.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="BA11088"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p_unnamed_2"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2020"
                     /collected_by="Department of Clinical Microbiology,
                     Christian Medical College and Hospital, Vellore"
     gene            complement(join(3752..4167,1..217))
                     /locus_tag="MXX37_RS27150"
                     /old_locus_tag="MXX37_27110"
     CDS             complement(join(3752..4167,1..217))
                     /locus_tag="MXX37_RS27150"
                     /old_locus_tag="MXX37_27110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000804504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3226 domain-containing protein"
                     /protein_id="WP_012579086.1"
                     /translation="MKDINNSKKIIFVEGDDDFHFLCNLLEIQGITDVFVEKINGKSKL
                     KQALRAFKNIDSFDEKESIFIILDADTSFSDTERSIIATLRELQISSPSSHNEIAMNGN
                     TKISFFIMPGKDKQGAIEDLIIEHASTRALYEYIIEFFEKIKNNKDDISASDKEYTYPT
                     NEKKAKVQVYLSCNRESDSRIGISMKNGIINTADNCFDEIKDFISKI"
                     /name="DUF3226 domain-containing protein"
     gene            complement(217..1332)
                     /locus_tag="MXX37_RS27155"
                     /old_locus_tag="MXX37_27115"
     CDS             complement(217..1332)
                     /locus_tag="MXX37_RS27155"
                     /old_locus_tag="MXX37_27115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019405083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_012579087.1"
                     /translation="MIKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCF
                     YDVKNPAVLLNIQAFRKEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYET
                     ETNQRLESSLSLNVDTVLSNQNIPRQTIGSQATVNSLKINVTETPNAKNRVSNKLFSMQ
                     LKEDGVEIKSEIKNERDGINYKFKTATIITTSRKINKEATITNVSSLLTQKRKKDILEN
                     LKKIDDRIVDIAISAIGNNKEIYLDIGFSELNEISMLGEGISRALSFISSVLVQENSII
                     LIDEIENGIHYSVIKDIIKSLISSAKQNNNQIFATTHSQDVIRAINEIDSKNEDIAYIR
                     LGREKNSLKPTAVQFNMDDFSYSVENDWEVR"
                     /name="ATP-binding protein"
     gene            complement(1677..1790)
                     /locus_tag="MXX37_RS27160"
                     /old_locus_tag="MXX37_27120"
                     /pseudo=""
     CDS             complement(1677..1790)
                     /locus_tag="MXX37_RS27160"
                     /old_locus_tag="MXX37_27120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            2206..2397
                     /locus_tag="MXX37_RS27165"
                     /old_locus_tag="MXX37_27125"
     CDS             2206..2397
                     /locus_tag="MXX37_RS27165"
                     /old_locus_tag="MXX37_27125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_004187666.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2397..2798
                     /locus_tag="MXX37_RS27170"
                     /old_locus_tag="MXX37_27130"
     CDS             2397..2798
                     /locus_tag="MXX37_RS27170"
                     /old_locus_tag="MXX37_27130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_012579088.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSGQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(3144..3386)
                     /locus_tag="MXX37_RS27175"
                     /old_locus_tag="MXX37_27135"
     CDS             complement(3144..3386)
                     /locus_tag="MXX37_RS27175"
                     /old_locus_tag="MXX37_27135"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_098963735.1"
                     /translation="MHSAEIHTIQPGEVLFPAFFSSENGERGRNLLRGREALPAQPENR
                     FSAPSGIGFVDGRQSRYGKSPDDSPHDSPAIRIVN"
                     /name="hypothetical protein"
     Typing          complement(1678..2085)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.399"
                     /coverage="99.0"
                     /evalue="5.92e-171"
ORIGIN
        1 atgtgtcagc atctaatata ataaaaatac tttctttttc atcgaaagaa tcaatgtttt
       61 tgaatgctct aagtgcttgt tttaattttg attttccatt tattttttcg acaaaaacat
      121 cggtaatgcc ttgtatttca agtaggttgc atagaaaatg aaaatcatca tcaccctcaa
      181 cgaaaatgat ctttttgcta ttatttatgt ctttcattat cttacctccc agtcgttctc
      241 aactgagtag gagaaatcat ccatattgaa ttgtacggct gttggtttta gggagttctt
      301 ttctcttcct agtctaatat aagcgatatc ttcatttttg ctatctattt cgtttattgc
      361 tcgtatcaca tcttgactat gagttgttgc aaatatttga ttgttgtttt gttttgcaga
      421 tgaaattaat gattttatta tgtctttaat tactgagtaa tgtattccgt tctcgatttc
      481 atcaataaga ataattgagt tttcctgtac cagcactgag ctgataaaag ataatgctcg
      541 actgataccc tcgccaagca ttgatatttc atttagctca ctaaatccaa tgtctaaata
      601 tatttcctta ttgttaccta tcgcagatat tgctatatct acaattctgt catctatttt
      661 ttttaagttt tctagtatgt cttttttcct tttttgtgtt agtaggctag atacatttgt
      721 aattgttgcc tctttgttta tctttctgga tgttgttatt attgttgctg tcttaaattt
      781 ataattaatc ccatcccttt cgttttttat ttcggatttt atttctacgc catcttcttt
      841 caattgcata gagaaaagct tattggaaac cctgtttttc gcattgggtg tctcggtcac
      901 atttattttt aaagagttta ctgtggcctg agaaccgata gtttgacgag gtatgttttg
      961 gttagatagt acggtgtcaa cgtttagaga caaacttgat tctaatctct gatttgtttc
     1021 tgtttcatat gtttgtgtta cttcagagcg ttcatctcga atgactatgg acatcttttg
     1081 tgatgtgtcc atatcatgaa agtaactaac ccaaaatggc ttgtttttgt ttatttctgc
     1141 catttctttt ctgaatgctt gaatgtttaa caaaacagcc gggtttttta catcataaaa
     1201 acaaaaaata gcatccagta tagatgtttt cccgtagttg tttttcccag ctatgatatt
     1261 taaagtcttt aattgcttta gatatagctc attgaagcat ttgaagttct ttaaacttat
     1321 ttcctttatc atgatagcct ctgttcgtgt ttttgttata tgccatacga tttgttagta
     1381 ccttaataaa atgtacagct ttcattgtga ttagctagac tttatgtcaa agattaactt
     1441 tgattgcttg tgttttaatc gatttttttt actttcttct tgagattatc tggcagcagc
     1501 cgtaagcttc cggctgtgaa cgaaaaaaac cgccttggcg ggcggttttt tcgaaaggtt
     1561 cagtagagtt ggcgctctat gaaccgaggt aactggctta aagggagcgc agtcaccaaa
     1621 actgttcgtt tagtttagct ttaactggcg tataacttca agactaactc cctaaatcag
     1681 ttaccagtgg ctgctgccag tggcgctttg tcgtgtcttt ccgggttgga ctcaagacga
     1741 tagttaccgg attaggcgca gcagtcggac tgaacggggg gttcgtgcat acagtccagc
     1801 ttggagcgaa ctgcctaccc ggaactgagt gtcaggcgtg gaatgagaca aacgcggcca
     1861 taacagcgga atgacaccgg taaaccgaaa ggcaggaaca ggagagcgca cgagggagcc
     1921 atcaggggga aacgcctggt atctttatag tcctgtcggg tttcgccacc actgatttga
     1981 gcgtcagatt ccgtgatgct cgtcaggggg gcggagccta tggaaaaacg gccgctgtgc
     2041 ggcctttcct tctttcctcc atgcgattac tcggttttct cgagcgtttc tacgcatgct
     2101 cctgccgctc gccgcagccg aacggcagga gcgtagcgac tgagtgagcg aggaagcgga
     2161 aaagaggaga tccctacact gaccactgac gctctgaggc ctcttatgac gaaacaacag
     2221 aaaacagcgc tgaacatggc taaattcatc cagaatcagt ctctgctcct gctggagaag
     2281 cttaacgagc ttgatctcga tgtcgaggcc gacctttgtg agaaactcca cgatgatgcg
     2341 gagcatcttt tccgtacact gtcctcgaga ctggatgcat tacaggatgg taactgatgg
     2401 ccagagtgtc tattagtgag gctgcccgac tgacgggtaa gagtagaaca acactgcaca
     2461 ggttaattaa agcaggtgac ctgtccacct gtagcggtga gcgcaatgca aaaatggtag
     2521 atacttcaga gcttttacgt gtctttggcc cctttgagca accgaagggt gaacaccatt
     2581 ctggacaggt ctctggacag cgtgatacag cctctgctga ccagagtgaa caggtgatcc
     2641 gtcatctgaa acaggagatt gaacacctga acaccttact tttgtccaag gattcgcaca
     2701 ttgacagcct gaaacaggcc atgctccttc ttgaaaatca ccaggcaaaa ttaactgaat
     2761 ccccggcgcc atggtggaaa ttctggaaaa aatcctgacc ccgtcatgct tcagttttcc
     2821 tctccggcca tcccagggag ttcctgaacc ttcccaaaaa tcgtcagatc tctgaacgct
     2881 cctcaccact aaaaataccc acaccccacg caaaattaaa attttgcaga ttccttattt
     2941 acaacaatgg gttaatgaaa aataaatgtg cggtgatgtg ttacaaagtg cagatccaag
     3001 tcgtggacga ctctatggcg aatcgctgac gaattgccca cgattcatat gtgaatcacg
     3061 ctttattatc atattgttat gatgaatcga ctcttgattc aattcatcac tttgggtgtt
     3121 ttttgctcat ggtgactctt gattcaattc acgattcgaa tcgccggtga atcgtgtggt
     3181 gagtcgtccg gcgacttgcc ataacgtgat tgccggccgt cgacgaaccc gattcctgaa
     3241 ggtgctgaaa accggttttc cggctgcgcc ggcaacgctt cacggccacg caataaattg
     3301 cgtccccgtt caccgttttc ggaggagaag aacgccggaa acaggacttc ccctggctga
     3361 atggtgtgaa tttccgcgct atgcacttgc gcgcatactc atgcatgccg taaaaacaga
     3421 gcctgcgcgt ttctggcggg ttttcgggtg gtttgttgcc tgttttaccg gtttcccgtc
     3481 agaaacgtcc tgagtccgtt ttagcggtgc gtacaattat gattttatgt taaattgttt
     3541 taagtgaata gagagaatat aacttaaggg agcatcttgt gctgggtctt ttacattaga
     3601 tctgcacaat cattgttttg gcatctggtg atgtctttag gacgtttgag attgctgata
     3661 actaaagtgt atgatgcttt ctatacgtta tccggcgttt aataacaccc tggtgataag
     3721 ccagcccgtg aagggctggc ttgatttgga tttatatttt tgaaataaaa tcttttattt
     3781 catcaaagca attgtctgct gtgtttatta ttccattttt catggatatt cctattcttg
     3841 agtcggattc tctattgcag ctaagataga cttgtacctt agcttttttt tcgtttgttg
     3901 gataagtgta ctctttgtca ctcgctgaga tgtcatcttt attattttta attttttcga
     3961 aaaattctat tatgtattca tataacgctc gagtgcttgc gtgttcaatt atcagatctt
     4021 caatggcacc ttgcttgtct tttcctggca ttataaagaa agaaattttt gtattgccat
     4081 tcatagctat ctcgttatgc gagctggggg aggagatttg tagttctcgc aatgtggcaa
     4141 ttattgatct ttctgtgtca gaaaatg
//
