LOCUS       NZ_CP095561             4991 bp    DNA     circular CON 25-JUN-2023
DEFINITION  Klebsiella pneumoniae strain BA11088 plasmid p_unnamed_1, complete
            sequence.
ACCESSION   NZ_CP095561
VERSION     NZ_CP095561.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27555111
            Assembly: GCF_030322925.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4991)
  AUTHORS   Veeraraghavan,B., Shankar,C. and Teekaraman,M.
  TITLE     Klebsiella pneumoniae BA11088
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4991)
  AUTHORS   Veeraraghavan,B., Shankar,C. and Teekaraman,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2022) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2021
            Assembly Method                   :: Unicycler v. June 2021
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 50.0x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/23/2023 17:43:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,450
            CDSs (total)                      :: 5,324
            Genes (coding)                    :: 5,176
            CDSs (with protein)               :: 5,176
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 66 of 148
            Pseudo Genes (incomplete)         :: 82 of 148
            Pseudo Genes (internal stop)      :: 23 of 148
            Pseudo Genes (multiple problems)  :: 21 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP095561.1.
            Bacteria and source DNA available from Department of Clinical
            Microbiology, Christian Medical College, Vellore, India.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4991
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="BA11088"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p_unnamed_1"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2020"
                     /collected_by="Department of Clinical Microbiology,
                     Christian Medical College and Hospital, Vellore"
     gene            330..587
                     /locus_tag="MXX37_RS27120"
                     /old_locus_tag="MXX37_27080"
     CDS             330..587
                     /locus_tag="MXX37_RS27120"
                     /old_locus_tag="MXX37_27080"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042109830.1"
                     /translation="MGSNNNQNKDLQDKQADLLDQTYTLGWMDGYAEGYDDAIEDTQNA
                     LNKLENENELLTEVVESKDNVIKELASSAGRALQAVKKNK"
                     /name="hypothetical protein"
     gene            complement(617..1675)
                     /locus_tag="MXX37_RS27125"
                     /old_locus_tag="MXX37_27085"
     CDS             complement(617..1675)
                     /locus_tag="MXX37_RS27125"
                     /old_locus_tag="MXX37_27085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012508929.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WP_042109829.1"
                     /translation="MAIYAVWNNKGGVGKSYLTFQLASEYARQNPTKKVLVVDLCPQAN
                     SSSMLLGGMINGENTLNQIHSAIQRKTISGYIEDRIRSPYIPTNTGSSYVINVSTHNSK
                     VPNNLYLVTGDEQLELQASRVVGASFPGPHDAWRTVHLWINDLISDICNSWNNEDSCVF
                     IDCNPSFSIYTELALTAAERLLIPFSADGSSKRAVKAVLSLVYGERRHQNEPQSDFYLN
                     SNRYSMSLPQIYMYVGNRLTQMNNSSASAFKTVVTEIGDEIWKVWQTKPSLFCIHPNGS
                     STPNNKRSFRNMFQYEVNDANTASVVSGALGIPIATLTAGNKTVSGKIIKVNQTQLDKQ
                     VPNIVALAGMIE"
                     /name="ParA family protein"
     gene            2587..2778
                     /locus_tag="MXX37_RS27130"
                     /old_locus_tag="MXX37_27090"
     CDS             2587..2778
                     /locus_tag="MXX37_RS27130"
                     /old_locus_tag="MXX37_27090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032489493.1"
                     /translation="MTKQQKTALNMAKFIQHQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2778..3179
                     /locus_tag="MXX37_RS27135"
                     /old_locus_tag="MXX37_27095"
     CDS             2778..3179
                     /locus_tag="MXX37_RS27135"
                     /old_locus_tag="MXX37_27095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_032489494.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQLKGEHHSGQVSEQRDTASVDQCEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            3974..4378
                     /locus_tag="MXX37_RS27140"
                     /old_locus_tag="MXX37_27100"
     CDS             3974..4378
                     /locus_tag="MXX37_RS27140"
                     /old_locus_tag="MXX37_27100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016529521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="WP_008321396.1"
                     /translation="MTILVTIQAQLVVGEEQVIKSLAPEGMLAAVFEDDGRTGYFYALD
                     ESVEGNPIMDAVHIYNAEDVSDGHIPSDVKIGWSEDSQKCVLLINGYPHGAFDFVGKNG
                     YCRSGYPPPINKVWSLSGHEWSDSVDDFFR"
                     /name="DUF2251 domain-containing protein"
     gene            complement(4472..4903)
                     /locus_tag="MXX37_RS27145"
                     /old_locus_tag="MXX37_27105"
     CDS             complement(4472..4903)
                     /locus_tag="MXX37_RS27145"
                     /old_locus_tag="MXX37_27105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_042109831.1"
                     /translation="MKIPAHLKHKPIIQVENYDRIDGPHADDTDAMGLSVGIAQWNTPG
                     WTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICITMDYSKNGRLSSSDDFPVTRST
                     DNPELAHHTEFMKKELKQNKSNLDVSLKRLSTELKRLGY"
                     /name="DUF6530 family protein"
     Typing          complement(2064..2466)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.857"
                     /coverage="99.0"
                     /evalue="7.72e-165"
ORIGIN
        1 ctattgttat catgtgcttg tgattttgtt tttccaattt tatgtttttt gcttggagag
       61 tagcggtgtt tttttgtgtc aagtgttatg ataagccgta cgtttttttt ctggtttata
      121 gttcggttat tcacagcaat gggcgtggtt ttctatgact acagataacg ttaggaatat
      181 tggcgactat aaaaagaaag atgtcggggt ggatgctgac tgtaatccag tctcaggaaa
      241 cacaccacca gtcagactaa gtgagaaact tagaaatgga attcctcctg gtttgaaaac
      301 tcagatgcgc caacaaatga ggaaaaaaca tgggctctaa caataatcag aataaagatc
      361 tgcaggataa gcaagctgat cttttggacc aaacgtatac tcttggttgg atggatggct
      421 atgccgaagg gtatgatgat gctattgaag atactcagaa cgctttgaat aaactggaaa
      481 acgaaaacga gttgcttact gaggttgttg aaagtaaaga taatgtaatc aaagagttgg
      541 cctctagtgc tggcagggcg ctgcaagcag taaagaaaaa caaataaaaa aaggcccttt
      601 taagggcctt gctattttat tcgatcatac cagcgagagc tacaatgttg gggacttgtt
      661 tatctagctg cgtctgatta acctttatta tttttcctga aacagtttta tttcctgcag
      721 ttaatgtcgc gattggaata cctaaggctc cagatacgac agatgctgtg tttgcatcat
      781 ttacttcata ctgaaacata ttcctgaaag atcttttatt atttggcgtt gagctcccat
      841 ttgggtgaat acaaaacaga cttggttttg tttgccatac tttccaaatt tcatcaccaa
      901 tttcggttac taccgtctta aatgcactgg cagatgaatt gttcatttgc gttaatctat
      961 ttccaacata catatatatt tgtggtagcg acatagaata acgattgcta ttaagataga
     1021 aatctgattg tggttcattc tgatggcgac gctcaccata aactaaagaa agtacagcct
     1081 taactgctct ctttgatgaa ccatcggcag agaaaggaat taaaaggcgc tctgctgcgg
     1141 ttaaagctaa ctctgtataa atagagaagc tagggttgca gtcaatgaat acgcagctat
     1201 cttcattatt ccatgagttg caaatgtcac tgattaaatc attaatccag aggtgaacag
     1261 tacgccatgc atcatgggga cctggaaatg atgccccaac aactcttgat gcttggagtt
     1321 ctaattgttc atcgccagtg acaagatata gattatttgg aactttacta ttgtgtgtag
     1381 atacatttat tacatagcta gaaccagtgt tggtaggaat atatggactt ctgatcctat
     1441 cctcaatata tccagatatt gtctttctct gtattgctga atgaatctgg tttagtgtgt
     1501 tttcgccatt tatcattcca ccaagtaaca tagaggacga gttcgcttgt gggcacaggt
     1561 caaccaccag gaccttttta gtagggttct gtctggcata ttcagaggct aactgaaaag
     1621 taaggtaact tttccctaca ccacccttgt tattccatac ggcatagatc gccatctata
     1681 actcctaatc tagttttgtt gttagcttag attcagggta ctagagatta ttgttctact
     1741 gttagtttct ttcagctgac tgcctttttt tggaacgata ttcagtcgaa ggggttggct
     1801 ggctcaccat gacttatctg gagttgtcga attccgatta aaaggatctt cttgagatcc
     1861 taacctgcgg gatgtaatct tttgctctgt aaacgaaaaa accacctggg gaggtggttt
     1921 ttcgaaggat cagtaagttg gggaacttct gaaccgtggt aacagggtgt acaagaccgc
     1981 tgccaccaaa tctgtccttt cagtttagct gtagttaggc tgtaacttca agaactctgc
     2041 accagtaatt cttgtacacc ccttaccagt ggctgctgcc agtggcgttt tgtcgtgcct
     2101 tccgggttgg actcaagtcg aaagttaccg gaacaggcgc agcagtcgga ctgaacgggg
     2161 ggttcgtgca tacagtccag cttggagcga actgcctacc cggaactgag tgtcaggcgt
     2221 ggaatgagac aaacgcggcc ataacagcgg aatgacaccg gtaaaccgaa aggcaggaac
     2281 aggagagcgc acgagggagc catcaggggg aaacgcctga tatctttata gtcctgtcgg
     2341 gtttcgccac cactgatttg agcgtccgtt tctgtgatgc ttgtcagggg ggcggagcct
     2401 atggaaaaac ggccgctgtg cggccttccc ttttctaaat tacgtgatcg ctcggttttc
     2461 tcgagctttc atacgcatgc tcctgccgct cgccgcagcc gaacggcagg agcgtagcga
     2521 ctgagtgagc gaggaagcgg aaaagagaac atccctacac tgagcactga cgctctgagg
     2581 cctcttatga cgaaacaaca gaaaacagcg ctgaacatgg ctaaattcat ccagcatcaa
     2641 tctctgctcc tgctggagaa gcttaacgag cttgatcttg atgtcgaggc cgacctttgt
     2701 gagaaactcc acgatgatgc ggagcatctt ttccgtacac tgtcctcgag actggatgca
     2761 ttacaggatg gtaactgatg gccagagtgt ctattagtga ggcagcccga ctgacgggta
     2821 agagtagaac aacactgcac aggttaatta aagcaggtga cctgtccacc tgtagcggtg
     2881 agcgcaatgc aaaaatggta gatacttcag agcttttacg tgtctttggt ccctttgaac
     2941 aactgaaggg tgaacaccat tctggacagg tctctgaaca gcgcgataca gcctctgttg
     3001 accagtgtga acaggtgatt cgtcatctga aacaggagat tgaacacctg aacactttac
     3061 ttttgtccaa agattcgcac attgacagcc tgaaacaggc catgctcctt cttgaaaatc
     3121 accaggcaaa attaactgaa tccccggcgc catggtggaa attctggaaa aaatcctgac
     3181 cctgtcatgc ttcagttttc ctctccggcc atcccgggga gttcctgaac cttcccaaaa
     3241 atagtcagat ctctgaacgc tcctcaccac taaaaatacc cacaccccac gcaaaattaa
     3301 aattttgcag atttgtattt aatatcagta gtttactttc ctgagatttc gttttttaaa
     3361 ttttatttat atagatccga ctctatgacg actcgtcata gagtccccgg cgagtcgtca
     3421 tagagtcggt aacgactcag ggctataaaa acaatgagtt aataacgacc cgactctaga
     3481 cccgactccc cgtttggttg ttttttagtc gcggcgactc taggtacgac tctagtgcag
     3541 agtcgccggt gaatcgtgtg gtgagtcgtc cggcgacttg ccataacgtg attgccggcc
     3601 gtcgacgaac ccgattcctg aacgtgctga aaaccggttt tccggctgcg ccggcaacgc
     3661 ttcacggcca cgcaataaat tgcgtccccg ttcaccgttt tcggatggga agaacgccgg
     3721 aaacaggact taccctgtct gaatggcgtg aatattcgcg ctatgcactt gcgtgcatac
     3781 tcatgcatgc cataaaaaca gagcctgcgc gtttctggcg ggttttcggg tggtttgttg
     3841 cctgttttac cggtttcccg tcagaaacgc cctcagcgcg tttctgacga tgctgataac
     3901 ggatgttatg gtaaattatc cgcttgtctg aaagctggct gccgaagcaa ccaaggaaag
     3961 gagaacagac ctgatgacca ttttagtgac gatacaggcc cagctcgttg tcggggagga
     4021 acaggttata aagagcctcg ctcctgaggg catgctggcc gccgtgttcg aagacgatgg
     4081 ccggaccggg tatttctatg cgctcgatga gtccgtcgag ggaaacccga ttatggacgc
     4141 agtacacatc tacaatgccg aagacgtttc agacggtcac attccttctg atgttaaaat
     4201 tggctggtca gaagacagtc agaagtgcgt actcctgatc aatggatacc cgcacggggc
     4261 attcgatttc gtgggaaaaa acgggtactg caggagtggt tatcctcccc ctataaacaa
     4321 ggtgtggtct ctttccgggc atgagtggag cgactctgtg gatgattttt tccggtgaat
     4381 tacggcaggc tatagcctgc cattatggtt cgaaaaacgg atgttatggt aaattcgtct
     4441 gtgaagtagg tagacatttc taaagctagt tttaatagcc aagtctcttc aattcagtcg
     4501 agaggcgttt gaggcttaca tcaagattgc ttttattttg ttttaactct tttttcataa
     4561 actcagtgtg atgtgctagc tcagggttat cagttgagcg agtcacggga aaatcatcac
     4621 tggatgaaag tcgcccattt ttactgtagt ccatggtgat acagatcaga gttgcaaggt
     4681 cgattacccg gtgaagaggc agctcttctg attgtcttga ccatttttct cctgtgtttc
     4741 gccaaacctt tgccgaaagc tcagtccatc caggagtgtt ccattgagca atacctacag
     4801 atagccccat agcatcagtg tcatcggcat gtgggccgtc aatgcggtcg taattttcga
     4861 cttgaataat tggtttatgc ttcaaatgcg cgggtatttt catcagttcg tccttaggta
     4921 atgtttgtga ttattaaatt acattgtttt tctaattata aaactcacta aatgtaagta
     4981 aatattaata t
//
